Wall clock time and date at job start Tue Mar 31 2020 23:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36001 * 116.99673 * 2 1 4 4 C 1.38582 * 120.07274 * 0.27492 * 3 2 1 5 5 C 1.38237 * 120.01533 * 180.29700 * 4 3 2 6 6 C 1.38248 * 120.15454 * 359.72567 * 5 4 3 7 7 C 1.38320 * 120.13586 * 359.97438 * 6 5 4 8 8 Br 1.89100 * 120.00958 * 179.97438 * 7 6 5 9 9 C 1.38644 * 119.98150 * 0.02562 * 7 6 5 10 10 O 1.36013 * 120.07911 * 180.02562 * 9 7 6 11 11 C 1.42902 * 117.00211 * 89.99408 * 10 9 7 12 12 C 1.53507 * 114.17020 * 210.00636 * 11 10 9 13 13 N 1.47489 * 87.92897 * 220.32989 * 12 11 10 14 14 C 1.46904 * 110.99948 * 138.70309 * 13 12 11 15 15 C 1.50696 * 109.46794 * 169.99650 * 14 13 12 16 16 H 1.07999 * 120.00319 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99717 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.47481 * 87.83412 * 27.01215 * 13 12 11 24 24 H 1.09001 * 109.47088 * 300.00122 * 1 2 3 25 25 H 1.09001 * 109.47181 * 59.99855 * 1 2 3 26 26 H 1.08994 * 109.47048 * 179.97438 * 1 2 3 27 27 H 1.08005 * 119.98994 * 0.02562 * 4 3 2 28 28 H 1.08003 * 119.92282 * 179.70636 * 5 4 3 29 29 H 1.07994 * 119.93752 * 179.97438 * 6 5 4 30 30 H 1.09001 * 113.25573 * 342.95682 * 11 10 9 31 31 H 1.08997 * 113.47543 * 105.56799 * 12 11 10 32 32 H 1.08999 * 113.53382 * 335.09910 * 12 11 10 33 33 H 1.09005 * 109.47078 * 49.99935 * 14 13 12 34 34 H 1.09002 * 109.47005 * 290.00151 * 14 13 12 35 35 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 36 36 H 1.08990 * 113.47671 * 87.75950 * 23 13 12 37 37 H 1.09001 * 113.47203 * 218.22506 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2930 2.3750 0.0058 5 6 1.9217 3.6061 -0.0005 6 6 3.3022 3.6809 -0.0067 7 6 4.0603 2.5240 -0.0062 8 35 5.9483 2.6304 -0.0155 9 6 3.4356 1.2862 0.0000 10 8 4.1792 0.1474 0.0010 11 6 4.5385 -0.3917 1.2747 12 6 5.8718 -1.1526 1.2817 13 7 5.2371 -2.1490 2.1647 14 6 5.6241 -3.5136 1.7822 15 6 5.1635 -4.4817 2.8412 16 1 4.6357 -4.1197 3.7111 17 6 5.4150 -5.8300 2.6990 18 7 5.0126 -6.6750 3.6230 19 14 6.3272 -6.4562 1.1940 20 1 5.3514 -6.7784 0.1221 21 1 7.2643 -5.4098 0.7122 22 1 7.0913 -7.6784 1.5515 23 6 3.9438 -1.7777 1.5610 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.2144 2.3196 0.0107 28 1 1.3331 4.5116 -0.0008 29 1 3.7897 4.6445 -0.0119 30 1 4.4277 0.3221 2.0910 31 1 6.6828 -0.6031 1.7596 32 1 6.1503 -1.5516 0.3064 33 1 6.7083 -3.5701 1.6851 34 1 5.1602 -3.7693 0.8295 35 1 5.1892 -7.6235 3.5227 36 1 3.7069 -2.3431 0.6599 37 1 3.1209 -1.7579 2.2756 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225803151.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:04 Heat of formation + Delta-G solvation = 7.800203 kcal Electronic energy + Delta-G solvation = -21543.092191 eV Core-core repulsion = 18141.531708 eV Total energy + Delta-G solvation = -3401.560483 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.76456 -39.48884 -37.90134 -36.63064 -32.76702 -32.19647 -30.41849 -29.52278 -29.12029 -27.42511 -25.52650 -25.27910 -22.79882 -22.30863 -21.19640 -19.54936 -18.61481 -17.53916 -16.86147 -16.72713 -16.12930 -15.55422 -15.29763 -14.71568 -14.58305 -14.29698 -14.04812 -13.82812 -13.32689 -12.65431 -12.58061 -12.41538 -12.17429 -12.07993 -11.75408 -11.70711 -11.64339 -11.30000 -10.91896 -10.78714 -10.60493 -10.35513 -9.95717 -9.74842 -9.42434 -9.32656 -8.90592 -8.55771 -8.43422 -8.02086 -6.03032 -4.00192 0.67286 0.97638 1.40721 3.04547 3.09583 3.30099 3.37485 3.39969 3.69536 4.43932 4.47708 4.64532 4.72934 4.82332 4.88662 4.93807 4.94000 4.98161 5.10152 5.26577 5.28404 5.32344 5.71599 5.80802 5.82934 5.96723 5.97349 6.09227 6.17296 6.28582 6.30270 6.47751 6.76190 6.98855 7.33202 7.59085 7.70932 7.83775 8.64939 9.07221 9.58297 11.10337 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.014832 B = 0.003708 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.348209 B = 7550.098740 C = 9013.797362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.295 6.295 3 C 0.120 3.880 4 C -0.188 4.188 5 C -0.084 4.084 6 C -0.121 4.121 7 C -0.077 4.077 8 Br -0.027 7.027 9 C 0.097 3.903 10 O -0.304 6.304 11 C 0.061 3.939 12 C -0.001 4.001 13 N -0.451 5.451 14 C 0.131 3.869 15 C -0.506 4.506 16 H 0.080 0.920 17 C 0.068 3.932 18 N -0.901 5.901 19 Si 0.874 3.126 20 H -0.277 1.277 21 H -0.267 1.267 22 H -0.285 1.285 23 C 0.003 3.997 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.105 0.895 27 H 0.138 0.862 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.029 0.971 34 H -0.001 1.001 35 H 0.263 0.737 36 H 0.075 0.925 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.957 24.801 -10.237 27.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.207 6.207 3 C 0.072 3.928 4 C -0.207 4.207 5 C -0.103 4.103 6 C -0.141 4.141 7 C -0.158 4.158 8 Br 0.059 6.941 9 C 0.050 3.950 10 O -0.220 6.220 11 C 0.006 3.994 12 C -0.130 4.130 13 N -0.175 5.175 14 C 0.004 3.996 15 C -0.544 4.544 16 H 0.098 0.902 17 C -0.133 4.133 18 N -0.540 5.540 19 Si 0.701 3.299 20 H -0.202 1.202 21 H -0.192 1.192 22 H -0.211 1.211 23 C -0.126 4.126 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.123 0.877 27 H 0.155 0.845 28 H 0.153 0.847 29 H 0.155 0.845 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.047 0.953 34 H 0.016 0.984 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.972 24.304 -9.614 26.810 hybrid contribution -0.392 -0.485 -1.493 1.618 sum -6.364 23.819 -11.107 27.041 Atomic orbital electron populations 1.23158 0.78185 1.04627 1.01112 1.86278 1.21301 1.25299 1.87814 1.19322 0.91188 0.85442 0.96801 1.21312 1.00514 0.91814 1.07030 1.20930 0.93844 0.97382 0.98098 1.20935 0.93694 0.96959 1.02487 1.22103 0.91780 0.94651 1.07234 1.96754 1.01294 1.98681 1.97405 1.17667 0.86909 0.86404 1.04017 1.86219 1.68804 1.37122 1.29822 1.24333 0.97281 0.94239 0.83590 1.24118 0.96178 0.95012 0.97734 1.68955 1.02535 1.05154 1.40889 1.20732 0.96457 0.86584 0.95867 1.20956 1.36755 0.90106 1.06564 0.90159 1.24907 0.95512 0.96747 0.96179 1.69896 1.47127 1.02860 1.34093 0.86875 0.80578 0.78734 0.83688 1.20232 1.19177 1.21062 1.24220 0.95910 0.93491 0.98952 0.92493 0.92655 0.87670 0.84470 0.84675 0.84531 0.88663 0.89748 0.91095 0.95311 0.98376 0.92671 0.90734 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 101.05 0.99 1.19 16 2 O -0.29 -3.85 10.28 -34.26 -0.35 -4.21 16 3 C 0.12 1.51 6.70 -39.13 -0.26 1.25 16 4 C -0.19 -1.73 9.04 -39.45 -0.36 -2.09 16 5 C -0.08 -0.68 10.04 -39.58 -0.40 -1.07 16 6 C -0.12 -1.14 9.78 -39.55 -0.39 -1.53 16 7 C -0.08 -0.94 6.23 -39.40 -0.25 -1.19 16 8 Br -0.03 -0.33 33.15 -68.01 -2.25 -2.58 16 9 C 0.10 1.37 5.62 -39.10 -0.22 1.15 16 10 O -0.30 -4.97 9.22 -34.30 -0.32 -5.29 16 11 C 0.06 1.03 4.72 -26.20 -0.12 0.91 16 12 C 0.00 -0.02 7.52 -7.54 -0.06 -0.08 16 13 N -0.45 -9.98 6.32 -246.10 -1.55 -11.53 16 14 C 0.13 3.30 3.64 -4.98 -0.02 3.28 16 15 C -0.51 -14.92 9.94 -34.44 -0.34 -15.26 16 16 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 17 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 18 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16 19 Si 0.87 21.96 27.47 -169.99 -4.67 17.29 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 22 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 23 C 0.00 0.07 7.55 -7.54 -0.06 0.01 16 24 H 0.06 0.38 7.65 -51.93 -0.40 -0.01 16 25 H 0.05 0.35 7.68 -51.93 -0.40 -0.04 16 26 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.14 0.90 6.30 -52.48 -0.33 0.57 16 28 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 29 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 30 H 0.10 1.53 7.96 -51.93 -0.41 1.11 16 31 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.07 1.30 7.91 -51.93 -0.41 0.89 16 33 H 0.03 0.73 7.14 -51.93 -0.37 0.36 16 34 H 0.00 -0.04 6.73 -51.93 -0.35 -0.39 16 35 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 36 H 0.07 1.52 7.42 -51.93 -0.39 1.13 16 37 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 332.91 15.07 5.02 5.02 Total: -1.00 -33.23 332.91 -9.69 -42.92 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -4.76 Total: -2.75 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -1.57 Total: -11.51 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: -0.78 Total: -38.89 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.67 Total: -9.50 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Atomic # 35 Polarization: -0.33 SS G_CDS: -2.25 Total: -2.58 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.23 -9.69 -42.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225803151.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.716 kcal (2) G-P(sol) polarization free energy of solvation -33.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds