Wall clock time and date at job start Tue Mar 31 2020 23:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36000 * 117.00092 * 2 1 4 4 C 1.38563 * 120.06530 * 0.22955 * 3 2 1 5 5 C 1.38321 * 119.98676 * 180.21006 * 4 3 2 6 6 Br 1.89099 * 119.93338 * 179.79116 * 5 4 3 7 7 C 1.38325 * 120.13018 * 359.81405 * 5 4 3 8 8 C 1.38245 * 120.13395 * 359.97419 * 7 5 4 9 9 C 1.38560 * 120.00722 * 359.97438 * 8 7 5 10 10 O 1.36011 * 120.06065 * 179.97438 * 9 8 7 11 11 C 1.42903 * 117.00066 * 4.99240 * 10 9 8 12 12 H 1.08998 * 110.88544 * 38.00563 * 11 10 9 13 13 C 1.55151 * 111.00492 * 161.93218 * 11 10 9 14 14 C 1.54336 * 103.02324 * 153.38156 * 13 11 10 15 15 N 1.47018 * 107.26212 * 338.13872 * 14 13 11 16 16 C 1.36936 * 125.64406 * 178.85347 * 15 14 13 17 17 H 1.08004 * 119.99766 * 185.77681 * 16 15 14 18 18 C 1.38809 * 120.00188 * 5.77181 * 16 15 14 19 19 N 1.31612 * 120.00071 * 353.14716 * 18 16 15 20 20 Si 1.86800 * 119.99831 * 173.14282 * 18 16 15 21 21 H 1.48497 * 109.47368 * 275.01417 * 20 18 16 22 22 H 1.48508 * 109.47203 * 35.01671 * 20 18 16 23 23 H 1.48508 * 109.47210 * 155.01216 * 20 18 16 24 24 C 1.47422 * 108.70424 * 358.58287 * 15 14 13 25 25 H 1.09001 * 109.47087 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47179 * 300.00291 * 1 2 3 27 27 H 1.09001 * 109.47168 * 60.00016 * 1 2 3 28 28 H 1.07999 * 120.00743 * 0.02562 * 4 3 2 29 29 H 1.07996 * 119.93848 * 179.97438 * 7 5 4 30 30 H 1.07997 * 119.99470 * 180.02562 * 8 7 5 31 31 H 1.09008 * 110.71865 * 271.94026 * 13 11 10 32 32 H 1.09006 * 110.72364 * 35.02938 * 13 11 10 33 33 H 1.09002 * 109.98982 * 218.66300 * 14 13 11 34 34 H 1.08994 * 109.77619 * 97.49506 * 14 13 11 35 35 H 0.97004 * 120.00195 * 179.97438 * 19 18 16 36 36 H 1.09005 * 110.36159 * 143.19336 * 24 15 14 37 37 H 1.09004 * 110.37223 * 265.40553 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3747 0.0048 5 6 1.9228 3.6063 0.0004 6 35 0.8932 5.1924 0.0010 7 6 3.3040 3.6799 -0.0049 8 6 4.0607 2.5229 -0.0053 9 6 3.4358 1.2863 0.0002 10 8 4.1792 0.1473 -0.0007 11 6 5.5965 0.2975 0.1034 12 1 5.8523 1.1070 0.7870 13 6 6.2662 -1.0324 0.5394 14 6 7.6881 -0.9152 -0.0492 15 7 7.6264 0.0599 -1.1478 16 6 8.6854 0.4648 -1.9158 17 1 8.5564 1.2563 -2.6392 18 6 9.9246 -0.1420 -1.7645 19 7 10.1184 -1.0098 -0.7942 20 14 11.3172 0.2730 -2.9383 21 1 11.2095 -0.5737 -4.1534 22 1 11.2301 1.7047 -3.3233 23 1 12.6194 0.0183 -2.2712 24 6 6.2346 0.5247 -1.2898 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.2145 2.3196 0.0090 29 1 3.7924 4.6431 -0.0088 30 1 5.1390 2.5831 -0.0090 31 1 6.3013 -1.1082 1.6263 32 1 5.7418 -1.8868 0.1114 33 1 8.0145 -1.8828 -0.4303 34 1 8.3775 -0.5651 0.7189 35 1 10.9843 -1.4341 -0.6887 36 1 6.2128 1.5833 -1.5490 37 1 5.7143 -0.0614 -2.0474 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228404635.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:47 Heat of formation + Delta-G solvation = -29.430289 kcal Electronic energy + Delta-G solvation = -21501.841567 eV Core-core repulsion = 18098.666648 eV Total energy + Delta-G solvation = -3403.174919 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.74081 -40.07862 -38.47599 -37.65188 -34.33894 -32.81339 -31.49624 -31.22106 -29.96138 -29.00016 -27.99335 -26.51124 -23.83708 -23.30633 -22.11171 -21.59940 -19.76724 -19.02011 -18.29683 -17.60635 -16.97891 -16.76965 -16.45269 -16.02274 -15.71174 -15.53755 -15.29459 -14.99066 -14.29220 -14.07211 -14.00078 -13.79373 -13.38847 -13.15325 -12.93361 -12.76539 -12.55178 -12.38284 -12.27966 -12.08755 -12.04557 -11.92962 -11.69414 -11.53579 -11.29918 -11.15295 -10.71769 -9.83611 -8.98712 -8.87651 -7.89112 -5.25398 0.00037 0.18925 0.56725 1.47010 1.49720 1.57339 2.02445 2.28314 2.45615 2.50067 3.30018 3.55606 3.64536 3.69658 3.90216 3.93913 4.00483 4.03350 4.10630 4.34961 4.41240 4.49118 4.54735 4.63590 4.69075 4.77732 4.80573 4.92776 4.98009 5.06479 5.15166 5.41955 5.43857 5.58164 5.68737 6.04574 6.15503 6.51137 7.05395 7.70339 8.34700 9.21789 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.017451 B = 0.002836 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.113944 B = 9872.372699 C =11120.487155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.326 6.326 3 C 0.092 3.908 4 C -0.140 4.140 5 C -0.098 4.098 6 Br -0.036 7.036 7 C -0.084 4.084 8 C -0.172 4.172 9 C 0.100 3.900 10 O -0.302 6.302 11 C 0.082 3.918 12 H 0.094 0.906 13 C -0.121 4.121 14 C 0.186 3.814 15 N -0.623 5.623 16 C -0.250 4.250 17 H 0.084 0.916 18 C -0.060 4.060 19 N -0.947 5.947 20 Si 0.979 3.021 21 H -0.286 1.286 22 H -0.268 1.268 23 H -0.293 1.293 24 C 0.118 3.882 25 H 0.118 0.882 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.167 0.833 29 H 0.154 0.846 30 H 0.146 0.854 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.018 0.982 34 H 0.022 0.978 35 H 0.250 0.750 36 H 0.053 0.947 37 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.793 10.454 4.364 26.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.240 6.240 3 C 0.046 3.954 4 C -0.161 4.161 5 C -0.178 4.178 6 Br 0.049 6.951 7 C -0.104 4.104 8 C -0.191 4.191 9 C 0.054 3.946 10 O -0.215 6.215 11 C 0.025 3.975 12 H 0.111 0.889 13 C -0.160 4.160 14 C 0.061 3.939 15 N -0.350 5.350 16 C -0.378 4.378 17 H 0.102 0.898 18 C -0.253 4.253 19 N -0.596 5.596 20 Si 0.807 3.193 21 H -0.213 1.213 22 H -0.192 1.192 23 H -0.219 1.219 24 C -0.008 4.008 25 H 0.136 0.864 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.184 0.816 29 H 0.171 0.829 30 H 0.163 0.837 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.036 0.964 34 H 0.041 0.959 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -23.964 10.607 4.336 26.562 hybrid contribution 1.284 -0.266 -0.609 1.446 sum -22.679 10.341 3.727 25.203 Atomic orbital electron populations 1.23421 0.76226 1.05799 1.02500 1.86205 1.23528 1.25370 1.88927 1.18272 0.88828 0.85878 1.02449 1.21123 1.01215 0.89119 1.04610 1.21490 0.94360 0.92125 1.09804 1.96697 1.70179 1.30370 1.97814 1.21029 0.91636 0.99154 0.98541 1.21315 1.01379 0.90647 1.05768 1.18755 0.89006 0.86734 1.00119 1.86193 1.18879 1.28776 1.87618 1.23555 0.76692 0.99925 0.97332 0.88855 1.22831 0.95357 0.95925 1.01839 1.20952 0.91512 0.92336 0.89062 1.44605 1.03193 1.49269 1.37980 1.19429 0.88434 1.15455 1.14487 0.89807 1.25675 1.00268 0.99143 1.00236 1.70153 1.23389 1.32992 1.33018 0.85092 0.78015 0.78158 0.78030 1.21301 1.19238 1.21901 1.22055 0.85510 0.98057 0.95177 0.86420 0.91170 0.91413 0.81601 0.82881 0.83658 0.88669 0.90677 0.96391 0.95930 0.94116 0.92857 0.96115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -8.37 10.28 -79.67 -0.82 -9.19 16 3 C 0.09 2.43 6.70 22.56 0.15 2.58 16 4 C -0.14 -2.93 8.77 22.37 0.20 -2.73 16 5 C -0.10 -2.07 6.22 22.31 0.14 -1.93 16 6 Br -0.04 -0.62 33.69 -20.37 -0.69 -1.31 16 7 C -0.08 -1.88 9.78 22.29 0.22 -1.67 16 8 C -0.17 -4.59 8.74 22.35 0.20 -4.40 16 9 C 0.10 3.02 6.65 22.56 0.15 3.17 16 10 O -0.30 -10.46 9.74 -79.79 -0.78 -11.24 16 11 C 0.08 2.95 2.82 31.98 0.09 3.04 16 12 H 0.09 3.12 6.57 -2.39 -0.02 3.10 16 13 C -0.12 -4.60 6.68 31.79 0.21 -4.39 16 14 C 0.19 9.20 5.38 86.73 0.47 9.67 16 15 N -0.62 -32.26 3.39 -691.97 -2.35 -34.61 16 16 C -0.25 -13.98 10.26 84.03 0.86 -13.11 16 17 H 0.08 4.47 7.84 -2.91 -0.02 4.45 16 18 C -0.06 -3.37 5.48 84.86 0.47 -2.91 16 19 N -0.95 -56.40 10.36 21.65 0.22 -56.18 16 20 Si 0.98 45.34 29.56 68.60 2.03 47.37 16 21 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 24 C 0.12 4.97 6.62 86.86 0.57 5.55 16 25 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.07 0.77 7.65 -2.38 -0.02 0.75 16 27 H 0.07 0.79 7.67 -2.39 -0.02 0.77 16 28 H 0.17 2.50 6.30 -2.91 -0.02 2.49 16 29 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 30 H 0.15 3.96 5.34 -2.91 -0.02 3.95 16 31 H 0.09 3.10 8.14 -2.38 -0.02 3.09 16 32 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16 33 H 0.02 0.99 7.38 -2.39 -0.02 0.98 16 34 H 0.02 1.21 7.53 -2.39 -0.02 1.19 16 35 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 36 H 0.05 2.11 7.31 -2.38 -0.02 2.10 16 37 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -66.51 324.81 3.54 -62.97 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 1.09 Total: 8.00 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: 4.83 Total: -5.81 kcal Atomic # 7 Polarization: -88.66 SS G_CDS: -2.12 Total: -90.79 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -1.60 Total: -20.43 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Atomic # 35 Polarization: -0.62 SS G_CDS: -0.69 Total: -1.31 kcal Total: -66.51 3.54 -62.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228404635.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.538 kcal (2) G-P(sol) polarization free energy of solvation -66.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds