Wall clock time and date at job start Tue Mar 31 2020 23:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36008 * 116.99963 * 2 1 4 4 C 1.38644 * 120.07312 * 269.97255 * 3 2 1 5 5 Br 1.89099 * 120.00861 * 0.04962 * 4 3 2 6 6 C 1.38317 * 119.98115 * 180.02562 * 4 3 2 7 7 C 1.38253 * 120.13753 * 0.02562 * 6 4 3 8 8 C 1.38237 * 120.15019 * 359.73677 * 7 6 4 9 9 C 1.38586 * 120.01584 * 0.51713 * 8 7 6 10 10 O 1.35998 * 120.06649 * 179.76650 * 9 8 7 11 11 C 1.42897 * 117.00136 * 353.94330 * 10 9 8 12 12 C 1.53509 * 114.16923 * 201.77383 * 11 10 9 13 13 N 1.47479 * 87.92894 * 220.32874 * 12 11 10 14 14 C 1.46901 * 111.00311 * 138.70540 * 13 12 11 15 15 C 1.50694 * 109.47353 * 169.99837 * 14 13 12 16 16 H 1.07997 * 120.00324 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00105 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00076 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99983 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47097 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47187 * 299.99818 * 19 17 15 22 22 H 1.48504 * 109.46964 * 60.00316 * 19 17 15 23 23 C 1.47477 * 87.83760 * 27.00700 * 13 12 11 24 24 H 1.09000 * 109.47356 * 60.00718 * 1 2 3 25 25 H 1.09002 * 109.47316 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47385 * 300.00180 * 1 2 3 27 27 H 1.08005 * 119.92663 * 179.97438 * 6 4 3 28 28 H 1.07999 * 119.92380 * 180.02562 * 7 6 4 29 29 H 1.07999 * 119.99139 * 180.25126 * 8 7 6 30 30 H 1.09002 * 113.25385 * 334.72218 * 11 10 9 31 31 H 1.08994 * 113.48169 * 105.56071 * 12 11 10 32 32 H 1.09002 * 113.52971 * 335.09704 * 12 11 10 33 33 H 1.08996 * 109.47088 * 49.99366 * 14 13 12 34 34 H 1.09004 * 109.46609 * 289.99416 * 14 13 12 35 35 H 0.97002 * 120.00547 * 179.97438 * 18 17 15 36 36 H 1.08998 * 113.47443 * 87.76102 * 23 13 12 37 37 H 1.09000 * 113.47579 * 218.22130 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 2.3624 1.8306 -1.1998 5 35 1.9336 0.9905 -2.8388 6 6 2.9908 3.0628 -1.1976 7 6 3.3055 3.6793 -0.0008 8 6 2.9886 3.0696 1.1987 9 6 2.3637 1.8327 1.2038 10 8 2.0558 1.2298 2.3834 11 6 2.5226 1.8624 3.5766 12 6 2.6207 0.9248 4.7881 13 7 2.0888 2.0243 5.6146 14 6 1.1084 1.5246 6.5879 15 6 0.7721 2.6180 7.5687 16 1 1.2400 3.5872 7.4785 17 6 -0.1332 2.3813 8.5814 18 7 -0.7034 1.2013 8.6911 19 14 -0.5496 3.7366 9.7977 20 1 -1.5416 3.2319 10.7807 21 1 0.6832 4.1585 10.5099 22 1 -1.1220 4.8970 9.0689 23 6 1.4188 2.5353 4.4043 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 3.2369 3.5438 -2.1328 28 1 3.7958 4.6416 -0.0031 29 1 3.2320 3.5554 2.1320 30 1 3.4060 2.4811 3.4184 31 1 3.6440 0.6474 5.0408 32 1 1.9535 0.0649 4.7279 33 1 1.5292 0.6733 7.1230 34 1 0.2035 1.2142 6.0654 35 1 -1.3400 1.0346 9.4038 36 1 0.4305 2.1057 4.2409 37 1 1.4235 3.6229 4.3319 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233694839.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:17 Heat of formation + Delta-G solvation = -16.769127 kcal Electronic energy + Delta-G solvation = -21242.424450 eV Core-core repulsion = 17839.798561 eV Total energy + Delta-G solvation = -3402.625889 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.93022 -40.73787 -38.71425 -37.85885 -35.05224 -33.08924 -31.59521 -30.61288 -30.12538 -27.81406 -27.35712 -26.90230 -24.48666 -23.45753 -22.78147 -20.91138 -19.66483 -18.70556 -18.30192 -17.74857 -17.01861 -16.85533 -16.42658 -16.22253 -16.03728 -15.61583 -15.15133 -14.89306 -14.82372 -14.19259 -13.96802 -13.77639 -13.55855 -13.31611 -13.06758 -12.85887 -12.72417 -12.52627 -12.35296 -12.17227 -11.89309 -11.73368 -11.39730 -11.28328 -11.23313 -11.04331 -10.64258 -9.85086 -9.76537 -9.27319 -8.25427 -6.36640 -0.14961 0.15689 0.48064 1.39854 1.43342 1.51503 1.99932 2.29911 2.38510 2.77762 3.06816 3.20605 3.29069 3.71192 3.85971 3.90102 4.00171 4.25891 4.28415 4.32049 4.36928 4.40332 4.41634 4.56095 4.61685 4.72033 4.76460 4.81981 4.98601 5.01656 5.10489 5.26416 5.47921 5.50631 5.68934 5.98813 6.06212 6.31561 6.49053 6.77053 7.33173 8.85896 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.028316 B = 0.002406 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.595076 B =11634.918487 C =12043.271796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.336 6.336 3 C 0.061 3.939 4 C -0.088 4.088 5 Br -0.029 7.029 6 C -0.115 4.115 7 C -0.067 4.067 8 C -0.184 4.184 9 C 0.100 3.900 10 O -0.307 6.307 11 C 0.070 3.930 12 C -0.001 4.001 13 N -0.471 5.471 14 C 0.176 3.824 15 C -0.529 4.529 16 H 0.064 0.936 17 C 0.001 3.999 18 N -0.935 5.935 19 Si 0.973 3.027 20 H -0.282 1.282 21 H -0.266 1.266 22 H -0.266 1.266 23 C -0.008 4.008 24 H 0.056 0.944 25 H 0.111 0.889 26 H 0.037 0.963 27 H 0.164 0.836 28 H 0.175 0.825 29 H 0.157 0.843 30 H 0.140 0.860 31 H 0.107 0.893 32 H 0.059 0.941 33 H 0.004 0.996 34 H -0.021 1.021 35 H 0.266 0.734 36 H 0.054 0.946 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.428 3.777 -26.370 27.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.253 6.253 3 C 0.015 3.985 4 C -0.168 4.168 5 Br 0.056 6.944 6 C -0.135 4.135 7 C -0.085 4.085 8 C -0.202 4.202 9 C 0.053 3.947 10 O -0.220 6.220 11 C 0.013 3.987 12 C -0.130 4.130 13 N -0.195 5.195 14 C 0.049 3.951 15 C -0.567 4.567 16 H 0.082 0.918 17 C -0.198 4.198 18 N -0.575 5.575 19 Si 0.797 3.203 20 H -0.208 1.208 21 H -0.191 1.191 22 H -0.191 1.191 23 C -0.137 4.137 24 H 0.075 0.925 25 H 0.130 0.870 26 H 0.055 0.945 27 H 0.181 0.819 28 H 0.193 0.807 29 H 0.174 0.826 30 H 0.158 0.842 31 H 0.125 0.875 32 H 0.077 0.923 33 H 0.022 0.978 34 H -0.003 1.003 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.529 3.402 -26.422 27.684 hybrid contribution -1.283 -0.131 1.075 1.679 sum 6.246 3.271 -25.347 26.309 Atomic orbital electron populations 1.23121 0.77817 1.04556 1.00553 1.86071 1.21113 1.23997 1.94081 1.17901 1.02692 0.88398 0.89515 1.22171 1.06234 0.97803 0.90590 1.96695 1.93061 1.80969 1.23632 1.21333 0.98870 0.92473 1.00844 1.21423 0.96601 1.00706 0.89805 1.21697 1.02505 0.94240 1.01802 1.19580 0.97182 0.92616 0.85286 1.86247 1.72795 1.50529 1.12409 1.24314 0.98116 0.95700 0.80533 1.24079 1.02779 0.95198 0.90921 1.68913 1.25634 1.19193 1.05744 1.19934 0.88566 0.95233 0.91343 1.21380 1.24174 0.98869 1.12242 0.91799 1.25975 0.95631 0.98351 0.99801 1.70075 1.29711 1.23784 1.33949 0.85378 0.78188 0.78673 0.78054 1.20762 1.19112 1.19098 1.24299 0.96780 1.02206 0.90395 0.92514 0.87043 0.94468 0.81865 0.80739 0.82591 0.84243 0.87509 0.92304 0.97754 1.00329 0.92523 0.92816 0.88503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.13 113.37 1.26 2.04 16 2 O -0.34 -9.52 9.54 -79.76 -0.76 -10.28 16 3 C 0.06 1.63 5.73 22.58 0.13 1.76 16 4 C -0.09 -1.89 6.23 22.39 0.14 -1.75 16 5 Br -0.03 -0.56 33.15 -20.37 -0.68 -1.24 16 6 C -0.12 -1.84 9.78 22.29 0.22 -1.62 16 7 C -0.07 -0.97 10.04 22.27 0.22 -0.74 16 8 C -0.18 -3.63 9.02 22.35 0.20 -3.43 16 9 C 0.10 2.66 6.69 22.56 0.15 2.81 16 10 O -0.31 -9.58 9.97 -79.65 -0.79 -10.37 16 11 C 0.07 2.07 4.01 30.93 0.12 2.19 16 12 C 0.00 -0.03 7.52 83.57 0.63 0.60 16 13 N -0.47 -20.17 6.32 -933.05 -5.89 -26.06 16 14 C 0.18 9.47 4.57 85.55 0.39 9.86 16 15 C -0.53 -30.27 9.39 25.60 0.24 -30.03 16 16 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 17 C 0.00 0.04 5.46 84.66 0.46 0.50 16 18 N -0.94 -56.59 13.29 21.45 0.28 -56.31 16 19 Si 0.97 44.12 29.54 68.60 2.03 46.15 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 23 C -0.01 -0.27 7.55 83.57 0.63 0.36 16 24 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 28 H 0.18 1.24 8.06 -2.91 -0.02 1.21 16 29 H 0.16 2.63 5.92 -2.91 -0.02 2.61 16 30 H 0.14 3.27 6.00 -2.39 -0.01 3.26 16 31 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 32 H 0.06 2.26 7.91 -2.39 -0.02 2.24 16 33 H 0.00 0.25 8.08 -2.39 -0.02 0.23 16 34 H -0.02 -1.22 7.30 -2.39 -0.02 -1.24 16 35 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 36 H 0.05 2.18 7.42 -2.39 -0.02 2.16 16 37 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -68.51 335.82 0.07 -68.44 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: 1.08 Total: 7.12 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: 4.80 Total: -17.46 kcal Atomic # 7 Polarization: -76.76 SS G_CDS: -5.61 Total: -82.36 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -1.55 Total: -20.66 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 35 Polarization: -0.56 SS G_CDS: -0.68 Total: -1.24 kcal Total: -68.51 0.07 -68.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233694839.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.673 kcal (2) G-P(sol) polarization free energy of solvation -68.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds