Wall clock time and date at job start Tue Mar 31 2020 23:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 119.99484 * 2 1 4 4 N 1.46501 * 109.47077 * 124.99870 * 3 2 1 5 5 C 1.46497 * 119.99821 * 263.64380 * 4 3 2 6 6 C 1.50710 * 109.47018 * 269.99777 * 5 4 3 7 7 H 1.08000 * 119.99500 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00016 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99761 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 119.99951 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47199 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46836 * 120.00201 * 10 8 6 13 13 H 1.48494 * 109.47217 * 240.00195 * 10 8 6 14 14 C 1.34779 * 120.00134 * 83.64277 * 4 3 2 15 15 O 1.21571 * 119.99936 * 184.32978 * 14 4 3 16 16 C 1.47676 * 119.99792 * 4.32998 * 14 4 3 17 17 N 1.31813 * 126.46590 * 354.71840 * 16 14 4 18 18 N 1.28473 * 110.13418 * 180.13681 * 17 16 14 19 19 C 1.46496 * 124.93332 * 179.85862 * 18 17 16 20 20 C 1.53003 * 109.47354 * 304.69823 * 19 18 17 21 21 C 1.35620 * 110.12943 * 359.59640 * 18 17 16 22 22 C 1.35444 * 107.13259 * 0.24081 * 21 18 17 23 23 Br 1.89108 * 127.23316 * 179.97438 * 22 21 18 24 24 H 1.07999 * 120.00223 * 0.02562 * 1 2 3 25 25 H 1.08004 * 119.99591 * 179.97438 * 1 2 3 26 26 H 1.07999 * 120.00223 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.47435 * 4.99550 * 3 2 1 28 28 H 1.09005 * 109.46975 * 244.99597 * 3 2 1 29 29 H 1.09001 * 109.47350 * 29.99632 * 5 4 3 30 30 H 1.08999 * 109.46851 * 150.00077 * 5 4 3 31 31 H 0.96996 * 119.99674 * 180.02562 * 9 8 6 32 32 H 1.08999 * 109.46965 * 64.70305 * 19 18 17 33 33 H 1.09004 * 109.46709 * 184.69760 * 19 18 17 34 34 H 1.09001 * 109.47021 * 180.02562 * 20 19 18 35 35 H 1.09000 * 109.46841 * 299.99766 * 20 19 18 36 36 H 1.08992 * 109.46868 * 60.00234 * 20 19 18 37 37 H 1.07994 * 126.43154 * 180.20846 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3320 1.1315 5 6 2.6071 1.9900 2.3820 6 6 3.0180 3.4392 2.3350 7 1 3.5167 3.8309 1.4608 8 6 2.7562 4.2651 3.4076 9 7 2.1484 3.7880 4.4718 10 14 3.2661 6.0612 3.3496 11 1 3.9283 6.3461 2.0513 12 1 2.0642 6.9217 3.4911 13 1 4.2107 6.3437 4.4600 14 6 4.2050 0.7515 1.0219 15 8 4.9459 0.7045 1.9846 16 6 4.6323 0.1724 -0.2677 17 7 3.9011 0.0654 -1.3591 18 7 4.5833 -0.4889 -2.2960 19 6 4.0844 -0.7672 -3.6450 20 6 2.8092 -1.6077 -3.5538 21 6 5.8344 -0.7736 -1.8565 22 6 5.9062 -0.3671 -0.5665 23 35 7.3955 -0.4943 0.5920 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9354 -0.0004 26 1 1.8501 -0.9353 0.0004 27 1 1.3584 2.1316 0.0895 28 1 2.6212 1.4026 -0.9314 29 1 1.5266 1.9226 2.5091 30 1 3.1028 1.4987 3.2193 31 1 1.9639 4.3692 5.2262 32 1 3.8650 0.1722 -4.1522 33 1 4.8413 -1.3151 -4.2064 34 1 2.4382 -1.8152 -4.5575 35 1 3.0288 -2.5472 -3.0466 36 1 2.0524 -1.0599 -2.9924 37 1 6.6246 -1.2378 -2.4277 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352218151.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:11 Heat of formation + Delta-G solvation = 83.586562 kcal Electronic energy + Delta-G solvation = -21995.529015 eV Core-core repulsion = 18629.547626 eV Total energy + Delta-G solvation = -3365.981389 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.64465 -38.68098 -35.56206 -34.75519 -33.11460 -32.07408 -31.70674 -30.43372 -28.98189 -27.53182 -25.54643 -24.67333 -22.92538 -21.28553 -21.15079 -19.81817 -18.71520 -17.26636 -16.44404 -16.27583 -16.04580 -15.29404 -14.73767 -14.47310 -14.20082 -13.96807 -13.73920 -13.43225 -12.87570 -12.62720 -12.56383 -12.45320 -12.08675 -11.84528 -11.66472 -11.21862 -10.98187 -10.94233 -10.80884 -10.59100 -10.51459 -10.13745 -9.94645 -9.54667 -9.22666 -8.93833 -8.89047 -8.63069 -8.36996 -7.57137 -5.97844 -4.02237 1.72326 1.75036 2.01495 2.56149 2.62605 3.34556 3.42026 3.46580 3.93461 4.10071 4.22552 4.50203 4.55685 4.60475 4.79091 4.91436 5.18877 5.26615 5.35738 5.38091 5.44392 5.49175 5.59690 5.79859 5.93378 6.10029 6.23841 6.39186 6.69912 6.96527 7.06696 7.20226 7.52713 7.63897 7.87080 7.99796 8.29839 8.47319 8.95748 9.13723 9.62524 11.10200 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.010551 B = 0.005063 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.084145 B = 5529.128929 C = 7358.002888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.140 4.140 3 C 0.130 3.870 4 N -0.578 5.578 5 C 0.247 3.753 6 C -0.524 4.524 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.897 3.103 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.582 3.418 15 O -0.513 6.513 16 C 0.030 3.970 17 N -0.245 5.245 18 N -0.289 5.289 19 C 0.119 3.881 20 C -0.168 4.168 21 C 0.014 3.986 22 C -0.161 4.161 23 Br 0.007 6.993 24 H 0.097 0.903 25 H 0.090 0.910 26 H 0.098 0.902 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.034 0.966 30 H 0.047 0.953 31 H 0.262 0.738 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.740 -12.874 -19.069 23.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.160 4.160 3 C 0.006 3.994 4 N -0.308 5.308 5 C 0.128 3.872 6 C -0.563 4.563 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.365 3.635 15 O -0.387 6.387 16 C -0.133 4.133 17 N -0.079 5.079 18 N -0.077 5.077 19 C 0.000 4.000 20 C -0.226 4.226 21 C -0.132 4.132 22 C -0.251 4.251 23 Br 0.090 6.910 24 H 0.115 0.885 25 H 0.108 0.892 26 H 0.116 0.884 27 H 0.100 0.900 28 H 0.117 0.883 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 4.491 -12.663 -18.480 22.847 hybrid contribution 0.664 0.787 -0.090 1.034 sum 5.155 -11.875 -18.570 22.637 Atomic orbital electron populations 1.23727 0.95806 1.01365 1.02866 1.23300 0.95823 0.99057 0.97783 1.20881 0.92952 0.94712 0.90859 1.48080 1.13229 1.53356 1.16172 1.19355 0.95967 0.91892 0.79965 1.21481 1.38434 0.94245 1.02165 0.92375 1.24915 0.95119 0.98839 0.95133 1.69950 1.41784 1.35846 1.05730 0.86459 0.78212 0.84729 0.78136 1.19813 1.21029 1.20860 1.16863 0.82619 0.79163 0.84847 1.90821 1.52756 1.58093 1.37040 1.22402 0.91583 1.04562 0.94783 1.73902 1.22775 1.14704 0.96533 1.45948 1.08430 1.41949 1.11357 1.21997 0.98354 1.01995 0.77697 1.22090 0.96837 1.00295 1.03391 1.22722 0.90049 1.05646 0.94818 1.21951 0.95944 1.11892 0.95329 1.96652 1.34029 1.97481 1.62803 0.88508 0.89175 0.88361 0.90010 0.88348 0.94759 0.93509 0.92823 0.88739 0.88022 0.90328 0.91868 0.90326 0.79726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.83 14.32 29.01 0.42 -2.42 16 2 C -0.14 -2.25 9.02 -36.03 -0.32 -2.58 16 3 C 0.13 2.40 5.45 -5.19 -0.03 2.37 16 4 N -0.58 -13.23 2.46 -177.61 -0.44 -13.67 16 5 C 0.25 6.69 5.17 -5.19 -0.03 6.67 16 6 C -0.52 -15.23 9.39 -34.44 -0.32 -15.55 16 7 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 8 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 10 Si 0.90 22.30 29.54 -169.99 -5.02 17.27 16 11 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 13 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 14 C 0.58 13.35 7.62 -12.40 -0.09 13.26 16 15 O -0.51 -13.42 15.17 5.30 0.08 -13.34 16 16 C 0.03 0.55 6.81 -82.77 -0.56 -0.02 16 17 N -0.24 -3.70 7.42 33.42 0.25 -3.46 16 18 N -0.29 -3.28 3.42 -61.16 -0.21 -3.49 16 19 C 0.12 0.76 7.12 -4.04 -0.03 0.73 16 20 C -0.17 -1.06 10.02 37.16 0.37 -0.69 16 21 C 0.01 0.16 11.43 -16.87 -0.19 -0.04 16 22 C -0.16 -2.57 6.68 -39.32 -0.26 -2.84 16 23 Br 0.01 0.11 32.72 -68.01 -2.23 -2.12 16 24 H 0.10 1.34 7.84 -52.49 -0.41 0.93 16 25 H 0.09 1.11 8.06 -52.48 -0.42 0.69 16 26 H 0.10 1.60 7.90 -52.49 -0.41 1.19 16 27 H 0.08 1.53 7.67 -51.93 -0.40 1.14 16 28 H 0.10 1.71 5.30 -51.93 -0.27 1.44 16 29 H 0.03 0.94 8.07 -51.93 -0.42 0.52 16 30 H 0.05 1.42 7.36 -51.93 -0.38 1.03 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.10 0.33 8.05 -51.93 -0.42 -0.09 16 34 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 37 H 0.19 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 340.76 15.07 5.14 5.14 Total: -1.00 -34.64 340.76 -7.65 -42.29 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -4.80 Total: -2.98 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -1.16 Total: 0.61 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.34 Total: -46.87 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.08 Total: -13.34 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 35 Polarization: 0.11 SS G_CDS: -2.23 Total: -2.12 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.64 -7.65 -42.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352218151.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.877 kcal (2) G-P(sol) polarization free energy of solvation -34.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds