Wall clock time and date at job start Tue Mar 31 2020 23:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 119.99484 * 2 1 4 4 N 1.46501 * 109.47077 * 124.99870 * 3 2 1 5 5 C 1.46497 * 119.99821 * 263.64380 * 4 3 2 6 6 C 1.50710 * 109.47018 * 269.99777 * 5 4 3 7 7 H 1.08000 * 119.99500 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00016 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99761 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 119.99951 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47199 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46836 * 120.00201 * 10 8 6 13 13 H 1.48494 * 109.47217 * 240.00195 * 10 8 6 14 14 C 1.34779 * 120.00134 * 83.64277 * 4 3 2 15 15 O 1.21571 * 119.99936 * 184.32978 * 14 4 3 16 16 C 1.47676 * 119.99792 * 4.32998 * 14 4 3 17 17 N 1.31813 * 126.46590 * 354.71840 * 16 14 4 18 18 N 1.28473 * 110.13418 * 180.13681 * 17 16 14 19 19 C 1.46496 * 124.93332 * 179.85862 * 18 17 16 20 20 C 1.53003 * 109.47354 * 304.69823 * 19 18 17 21 21 C 1.35620 * 110.12943 * 359.59640 * 18 17 16 22 22 C 1.35444 * 107.13259 * 0.24081 * 21 18 17 23 23 Br 1.89108 * 127.23316 * 179.97438 * 22 21 18 24 24 H 1.07999 * 120.00223 * 0.02562 * 1 2 3 25 25 H 1.08004 * 119.99591 * 179.97438 * 1 2 3 26 26 H 1.07999 * 120.00223 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.47435 * 4.99550 * 3 2 1 28 28 H 1.09005 * 109.46975 * 244.99597 * 3 2 1 29 29 H 1.09001 * 109.47350 * 29.99632 * 5 4 3 30 30 H 1.08999 * 109.46851 * 150.00077 * 5 4 3 31 31 H 0.96996 * 119.99674 * 180.02562 * 9 8 6 32 32 H 1.08999 * 109.46965 * 64.70305 * 19 18 17 33 33 H 1.09004 * 109.46709 * 184.69760 * 19 18 17 34 34 H 1.09001 * 109.47021 * 180.02562 * 20 19 18 35 35 H 1.09000 * 109.46841 * 299.99766 * 20 19 18 36 36 H 1.08992 * 109.46868 * 60.00234 * 20 19 18 37 37 H 1.07994 * 126.43154 * 180.20846 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3320 1.1315 5 6 2.6071 1.9900 2.3820 6 6 3.0180 3.4392 2.3350 7 1 3.5167 3.8309 1.4608 8 6 2.7562 4.2651 3.4076 9 7 2.1484 3.7880 4.4718 10 14 3.2661 6.0612 3.3496 11 1 3.9283 6.3461 2.0513 12 1 2.0642 6.9217 3.4911 13 1 4.2107 6.3437 4.4600 14 6 4.2050 0.7515 1.0219 15 8 4.9459 0.7045 1.9846 16 6 4.6323 0.1724 -0.2677 17 7 3.9011 0.0654 -1.3591 18 7 4.5833 -0.4889 -2.2960 19 6 4.0844 -0.7672 -3.6450 20 6 2.8092 -1.6077 -3.5538 21 6 5.8344 -0.7736 -1.8565 22 6 5.9062 -0.3671 -0.5665 23 35 7.3955 -0.4943 0.5920 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9354 -0.0004 26 1 1.8501 -0.9353 0.0004 27 1 1.3584 2.1316 0.0895 28 1 2.6212 1.4026 -0.9314 29 1 1.5266 1.9226 2.5091 30 1 3.1028 1.4987 3.2193 31 1 1.9639 4.3692 5.2262 32 1 3.8650 0.1722 -4.1522 33 1 4.8413 -1.3151 -4.2064 34 1 2.4382 -1.8152 -4.5575 35 1 3.0288 -2.5472 -3.0466 36 1 2.0524 -1.0599 -2.9924 37 1 6.6246 -1.2378 -2.4277 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352218151.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:11 Heat of formation + Delta-G solvation = 61.541623 kcal Electronic energy + Delta-G solvation = -21996.484955 eV Core-core repulsion = 18629.547626 eV Total energy + Delta-G solvation = -3366.937329 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.73872 -40.41218 -37.23409 -35.60185 -35.08174 -33.68825 -32.92228 -31.49711 -30.13759 -29.40288 -27.00890 -26.14049 -24.43092 -22.55504 -22.17549 -21.16269 -20.11911 -18.63820 -18.43352 -17.53239 -17.26690 -17.04732 -16.16692 -16.00329 -15.54220 -15.25999 -14.82365 -14.54593 -14.36992 -14.22039 -14.05558 -13.39084 -13.31501 -13.18857 -12.93832 -12.93066 -12.60490 -12.34316 -12.25097 -12.20288 -11.98865 -11.83401 -11.61754 -11.34608 -10.64189 -10.52458 -10.37422 -10.16563 -9.79847 -9.41992 -8.21345 -6.36303 0.51163 0.66983 0.85504 1.34751 1.36981 1.39327 1.51390 1.62505 2.27123 2.44542 2.51232 3.07942 3.34346 3.69701 3.83692 4.09277 4.09971 4.23052 4.26767 4.37882 4.42098 4.53968 4.71569 4.86041 4.93609 4.94435 5.03625 5.11963 5.23387 5.33398 5.52940 5.70735 5.75959 5.80392 5.98746 6.06267 6.62087 6.72624 6.80341 7.26080 7.42087 8.86169 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.010551 B = 0.005063 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.084145 B = 5529.128929 C = 7358.002888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.158 4.158 3 C 0.134 3.866 4 N -0.586 5.586 5 C 0.266 3.734 6 C -0.542 4.542 7 H 0.050 0.950 8 C 0.011 3.989 9 N -0.926 5.926 10 Si 0.968 3.032 11 H -0.269 1.269 12 H -0.267 1.267 13 H -0.280 1.280 14 C 0.573 3.427 15 O -0.562 6.562 16 C -0.010 4.010 17 N -0.241 5.241 18 N -0.272 5.272 19 C 0.107 3.893 20 C -0.166 4.166 21 C 0.047 3.953 22 C -0.190 4.190 23 Br -0.007 7.007 24 H 0.100 0.900 25 H 0.116 0.884 26 H 0.095 0.905 27 H 0.072 0.928 28 H 0.110 0.890 29 H 0.023 0.977 30 H 0.003 0.997 31 H 0.268 0.732 32 H 0.109 0.891 33 H 0.148 0.852 34 H 0.108 0.892 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.716 -13.246 -22.620 26.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.177 4.177 3 C 0.011 3.989 4 N -0.316 5.316 5 C 0.145 3.855 6 C -0.581 4.581 7 H 0.068 0.932 8 C -0.188 4.188 9 N -0.566 5.566 10 Si 0.792 3.208 11 H -0.194 1.194 12 H -0.192 1.192 13 H -0.205 1.205 14 C 0.360 3.640 15 O -0.440 6.440 16 C -0.170 4.170 17 N -0.078 5.078 18 N -0.061 5.061 19 C -0.010 4.010 20 C -0.224 4.224 21 C -0.100 4.100 22 C -0.281 4.281 23 Br 0.077 6.923 24 H 0.119 0.881 25 H 0.134 0.866 26 H 0.113 0.887 27 H 0.091 0.909 28 H 0.128 0.872 29 H 0.041 0.959 30 H 0.021 0.979 31 H 0.077 0.923 32 H 0.127 0.873 33 H 0.165 0.835 34 H 0.126 0.874 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 4.430 -13.048 -22.082 26.029 hybrid contribution 0.586 0.799 0.866 1.316 sum 5.016 -12.249 -21.216 25.006 Atomic orbital electron populations 1.23967 0.95086 1.02778 0.99535 1.23033 0.96322 0.97587 1.00764 1.21001 0.92324 0.95892 0.89656 1.48061 1.14481 1.53202 1.15887 1.18785 0.94463 0.91259 0.81021 1.21676 1.38842 0.95273 1.02276 0.93174 1.25828 0.94790 1.03681 0.94511 1.70064 1.42396 1.37731 1.06391 0.85363 0.78341 0.78914 0.78164 1.19354 1.19194 1.20529 1.17463 0.81843 0.78444 0.86271 1.90763 1.53935 1.60010 1.39247 1.21692 0.93492 1.07818 0.94045 1.73756 1.22904 1.14725 0.96396 1.46548 1.08197 1.39286 1.12037 1.22622 0.99772 1.03458 0.75158 1.22082 0.96177 0.99437 1.04676 1.23370 0.90637 1.02848 0.93103 1.22149 0.94943 1.13812 0.97150 1.96611 1.34151 1.97538 1.64047 0.88135 0.86577 0.88657 0.90913 0.87220 0.95876 0.97910 0.92330 0.87320 0.83454 0.87388 0.92560 0.92819 0.74630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.76 14.32 67.78 0.97 -3.79 16 2 C -0.16 -5.07 9.02 25.64 0.23 -4.83 16 3 C 0.13 5.07 5.45 85.63 0.47 5.53 16 4 N -0.59 -28.32 2.46 -834.10 -2.05 -30.37 16 5 C 0.27 15.32 5.17 85.64 0.44 15.76 16 6 C -0.54 -32.79 9.39 25.60 0.24 -32.55 16 7 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 8 C 0.01 0.66 5.46 84.65 0.46 1.12 16 9 N -0.93 -57.49 13.29 21.45 0.28 -57.20 16 10 Si 0.97 46.37 29.54 68.60 2.03 48.40 16 11 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 13 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 14 C 0.57 27.78 7.62 86.74 0.66 28.44 16 15 O -0.56 -31.45 15.17 -3.94 -0.06 -31.51 16 16 C -0.01 -0.38 6.81 42.45 0.29 -0.09 16 17 N -0.24 -7.03 7.42 -48.18 -0.36 -7.39 16 18 N -0.27 -5.29 3.42 -347.41 -1.19 -6.48 16 19 C 0.11 0.86 7.12 86.38 0.62 1.48 16 20 C -0.17 -1.51 10.02 71.98 0.72 -0.79 16 21 C 0.05 0.92 11.43 83.46 0.95 1.87 16 22 C -0.19 -5.94 6.68 22.44 0.15 -5.79 16 23 Br -0.01 -0.23 32.72 -20.37 -0.67 -0.90 16 24 H 0.10 2.66 7.84 -2.91 -0.02 2.64 16 25 H 0.12 2.56 8.06 -2.91 -0.02 2.54 16 26 H 0.10 3.13 7.90 -2.91 -0.02 3.11 16 27 H 0.07 2.82 7.67 -2.39 -0.02 2.80 16 28 H 0.11 3.86 5.30 -2.38 -0.01 3.84 16 29 H 0.02 1.36 8.07 -2.39 -0.02 1.34 16 30 H 0.00 0.18 7.36 -2.39 -0.02 0.17 16 31 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 32 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.15 -0.04 8.05 -2.39 -0.02 -0.05 16 34 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.05 0.78 8.09 -2.39 -0.02 0.76 16 37 H 0.24 2.04 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -81.56 340.76 5.26 -76.30 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: 1.07 Total: 2.80 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 6.20 Total: 6.36 kcal Atomic # 7 Polarization: -98.14 SS G_CDS: -3.31 Total: -101.45 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -0.06 Total: -31.51 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Atomic # 35 Polarization: -0.23 SS G_CDS: -0.67 Total: -0.90 kcal Total: -81.56 5.26 -76.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352218151.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.839 kcal (2) G-P(sol) polarization free energy of solvation -81.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds