Wall clock time and date at job start Tue Mar 31 2020 23:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35365 * 126.13092 * 2 1 4 4 Br 1.89094 * 126.04715 * 0.06123 * 3 2 1 5 5 C 1.39922 * 107.90521 * 180.02562 * 3 2 1 6 6 N 1.30844 * 108.21067 * 359.74308 * 5 3 2 7 7 N 1.35013 * 126.13587 * 180.02562 * 2 1 3 8 8 C 1.46507 * 126.03317 * 359.95776 * 7 2 1 9 9 C 1.50703 * 109.46841 * 90.00002 * 8 7 2 10 10 O 1.21280 * 120.00097 * 0.27743 * 9 8 7 11 11 N 1.34778 * 119.99735 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99856 * 180.02562 * 11 9 8 13 13 C 1.52994 * 109.47191 * 178.35178 * 12 11 9 14 14 C 1.50703 * 115.55356 * 65.13653 * 13 12 11 15 15 H 1.08001 * 120.00480 * 265.41460 * 14 13 12 16 16 C 1.37879 * 119.99414 * 85.40975 * 14 13 12 17 17 N 1.31509 * 120.00440 * 353.56590 * 16 14 13 18 18 Si 1.86807 * 119.99650 * 173.56243 * 16 14 13 19 19 H 1.48493 * 109.46919 * 90.00169 * 18 16 14 20 20 H 1.48501 * 109.46821 * 209.99940 * 18 16 14 21 21 H 1.48501 * 109.47001 * 330.00079 * 18 16 14 22 22 C 1.52999 * 117.49757 * 279.47391 * 13 12 11 23 23 C 1.52995 * 117.50051 * 210.81485 * 13 12 11 24 24 H 1.08997 * 109.46954 * 269.97668 * 1 2 3 25 25 H 1.08994 * 109.47057 * 29.97250 * 1 2 3 26 26 H 1.08993 * 109.47027 * 149.97300 * 1 2 3 27 27 H 1.08006 * 125.89058 * 179.97438 * 5 3 2 28 28 H 1.08993 * 109.47280 * 330.00326 * 8 7 2 29 29 H 1.09001 * 109.46945 * 209.99981 * 8 7 2 30 30 H 0.96999 * 120.00126 * 0.02562 * 11 9 8 31 31 H 1.09000 * 109.46940 * 298.34967 * 12 11 9 32 32 H 1.08994 * 109.46954 * 58.35089 * 12 11 9 33 33 H 0.96996 * 120.00638 * 185.07383 * 17 16 14 34 34 H 1.09008 * 117.49886 * 359.97438 * 22 13 12 35 35 H 1.09003 * 117.50403 * 145.01792 * 22 13 12 36 36 H 1.08999 * 117.50232 * 214.97866 * 23 13 12 37 37 H 1.08997 * 117.49860 * 359.96807 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3052 1.0933 0.0000 4 35 1.7264 2.8935 0.0016 5 6 3.6342 0.6557 -0.0006 6 7 3.6339 -0.6527 0.0046 7 7 2.3032 -1.0904 -0.0005 8 6 1.8546 -2.4851 -0.0002 9 6 1.6999 -2.9632 -1.4210 10 8 1.9456 -2.2145 -2.3430 11 7 1.2945 -4.2248 -1.6671 12 6 1.1447 -4.6898 -3.0482 13 6 0.7164 -6.1586 -3.0482 14 6 -0.6444 -6.4389 -2.4644 15 1 -0.7387 -6.7243 -1.4271 16 6 -1.7690 -6.3308 -3.2547 17 7 -1.6696 -5.8622 -4.4794 18 14 -3.4340 -6.8502 -2.5857 19 1 -4.0874 -5.6897 -1.9289 20 1 -4.2872 -7.3325 -3.7013 21 1 -3.2510 -7.9412 -1.5950 22 6 1.8058 -7.2121 -2.8381 23 6 1.1750 -7.0282 -4.2206 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8897 -0.5142 27 1 4.5093 1.2887 -0.0011 28 1 0.8964 -2.5585 0.5141 29 1 2.5909 -3.1035 0.5132 30 1 1.1020 -4.8249 -0.9297 31 1 0.3872 -4.0904 -3.5532 32 1 2.0959 -4.5887 -3.5708 33 1 -2.4688 -5.7169 -5.0096 34 1 2.8278 -6.8588 -2.7002 35 1 1.5382 -8.1081 -2.2780 36 1 0.4926 -7.8032 -4.5695 37 1 1.7813 -6.5538 -4.9921 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361429222.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:03 Heat of formation + Delta-G solvation = 63.758196 kcal Electronic energy + Delta-G solvation = -21305.958986 eV Core-core repulsion = 17939.117774 eV Total energy + Delta-G solvation = -3366.841212 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.47678 -39.14519 -36.80872 -33.63976 -33.48317 -32.71034 -32.07266 -30.49328 -27.95729 -26.79198 -25.97731 -24.99719 -21.53246 -21.24420 -20.44755 -19.77514 -19.28390 -17.25486 -16.92642 -16.15154 -15.35800 -15.13668 -14.83836 -14.72499 -14.20703 -13.92531 -13.78616 -13.26083 -13.22054 -12.90305 -12.71846 -12.45219 -12.28117 -11.75856 -11.66924 -11.09643 -11.08306 -11.03644 -10.98133 -10.61247 -10.36324 -10.15701 -9.96249 -9.70593 -9.26026 -9.08277 -8.60079 -8.47666 -8.39216 -8.22247 -6.17502 -4.27315 1.50462 1.68757 2.45165 2.52090 2.86549 3.17611 3.27021 3.28075 3.62478 4.26263 4.40066 4.46312 4.79810 4.93146 4.95752 5.10777 5.12452 5.26936 5.32160 5.36760 5.71603 5.79660 5.91623 6.23196 6.30375 6.35579 6.44081 6.60162 6.68428 6.74361 7.00421 7.08174 7.31092 7.37745 7.49131 7.71085 8.02387 8.22812 8.58798 8.74064 9.40338 10.90139 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.019003 B = 0.002740 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.127147 B =10217.507230 C =11080.559721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.141 3.859 3 C -0.249 4.249 4 Br -0.028 7.028 5 C 0.079 3.921 6 N -0.277 5.277 7 N -0.342 5.342 8 C 0.110 3.890 9 C 0.486 3.514 10 O -0.536 6.536 11 N -0.696 5.696 12 C 0.164 3.836 13 C 0.027 3.973 14 C -0.504 4.504 15 H 0.061 0.939 16 C 0.075 3.925 17 N -0.873 5.873 18 Si 0.890 3.110 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.210 4.210 23 C -0.147 4.147 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.189 0.811 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.402 0.598 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.263 0.737 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.356 13.414 11.985 18.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.010 3.990 3 C -0.340 4.340 4 Br 0.055 6.945 5 C -0.109 4.109 6 N -0.096 5.096 7 N -0.122 5.122 8 C -0.016 4.016 9 C 0.268 3.732 10 O -0.413 6.413 11 N -0.346 5.346 12 C 0.042 3.958 13 C 0.026 3.974 14 C -0.541 4.541 15 H 0.079 0.921 16 C -0.130 4.130 17 N -0.509 5.509 18 Si 0.717 3.283 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.248 4.248 23 C -0.185 4.185 24 H 0.106 0.894 25 H 0.111 0.889 26 H 0.099 0.901 27 H 0.206 0.794 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.236 0.764 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.902 13.338 11.096 18.326 hybrid contribution -1.365 -0.297 0.439 1.465 sum 4.537 13.041 11.536 17.992 Atomic orbital electron populations 1.20633 0.86524 1.05213 1.03824 1.20851 0.94868 0.86168 0.97092 1.21357 0.94859 0.91046 1.26715 1.96545 1.90014 1.09471 1.98481 1.23741 0.96441 0.92014 0.98722 1.77466 0.96349 1.12041 1.23736 1.47898 1.03879 1.04780 1.55691 1.21649 1.03418 0.79013 0.97502 1.20523 0.78977 0.83216 0.90452 1.90751 1.50255 1.54875 1.45426 1.45917 1.65961 1.11578 1.11108 1.21050 0.98613 0.96521 0.79643 1.19020 0.92891 0.86315 0.99152 1.20329 0.88920 1.48475 0.96420 0.92132 1.24993 0.98986 0.94463 0.94531 1.69965 1.29091 1.42941 1.08857 0.86634 0.83902 0.79065 0.78677 1.20637 1.21104 1.19767 1.23037 0.96753 1.03064 1.01900 1.22496 1.02049 1.03919 0.90060 0.89360 0.88884 0.90099 0.79379 0.85817 0.85566 0.76373 0.90786 0.94322 0.92733 0.91623 0.90252 0.89737 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 9.69 36.01 0.35 -0.76 16 2 C 0.14 1.90 6.93 -82.22 -0.57 1.33 16 3 C -0.25 -3.28 6.52 -39.98 -0.26 -3.54 16 4 Br -0.03 -0.31 33.48 -68.01 -2.28 -2.58 16 5 C 0.08 1.05 12.01 -17.34 -0.21 0.84 16 6 N -0.28 -4.25 12.57 30.64 0.39 -3.86 16 7 N -0.34 -4.92 3.10 -58.28 -0.18 -5.10 16 8 C 0.11 1.35 6.55 -5.19 -0.03 1.32 16 9 C 0.49 8.30 7.90 -10.98 -0.09 8.21 16 10 O -0.54 -11.67 16.43 5.56 0.09 -11.58 16 11 N -0.70 -12.14 5.47 -60.30 -0.33 -12.47 16 12 C 0.16 3.53 5.50 -4.04 -0.02 3.51 16 13 C 0.03 0.60 1.38 -155.66 -0.21 0.38 16 14 C -0.50 -12.23 8.63 -34.44 -0.30 -12.52 16 15 H 0.06 1.43 7.82 -52.49 -0.41 1.02 16 16 C 0.07 1.89 5.39 -17.82 -0.10 1.80 16 17 N -0.87 -23.36 12.91 55.43 0.72 -22.65 16 18 Si 0.89 19.60 29.55 -169.99 -5.02 14.58 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 22 C -0.21 -4.15 9.96 -26.70 -0.27 -4.42 16 23 C -0.15 -3.24 9.42 -26.70 -0.25 -3.49 16 24 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.09 0.95 7.76 -51.93 -0.40 0.55 16 26 H 0.08 0.91 7.73 -51.93 -0.40 0.51 16 27 H 0.19 1.88 8.06 -52.48 -0.42 1.45 16 28 H 0.12 1.11 7.66 -51.93 -0.40 0.71 16 29 H 0.13 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.40 6.07 8.37 -40.82 -0.34 5.73 16 31 H 0.07 1.84 8.14 -51.93 -0.42 1.42 16 32 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 33 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 34 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 35 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 36 H 0.08 1.99 8.14 -51.93 -0.42 1.56 16 37 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 345.51 15.07 5.21 5.21 Total: -1.00 -30.96 345.51 -8.26 -39.23 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -4.89 Total: 6.56 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -1.96 Total: -7.34 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.59 Total: -44.08 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Atomic # 35 Polarization: -0.31 SS G_CDS: -2.28 Total: -2.58 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.96 -8.26 -39.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361429222.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.983 kcal (2) G-P(sol) polarization free energy of solvation -30.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds