Wall clock time and date at job start Tue Mar 31 2020 23:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28465 * 124.88538 * 2 1 4 4 C 1.31806 * 110.10111 * 179.97438 * 3 2 1 5 5 C 1.47716 * 126.51049 * 180.02562 * 4 3 2 6 6 O 1.21570 * 119.99619 * 187.00941 * 5 4 3 7 7 N 1.34772 * 119.99759 * 7.01310 * 5 4 3 8 8 C 1.46920 * 120.63584 * 6.73838 * 7 5 4 9 9 C 1.53630 * 108.54405 * 126.36898 * 8 7 5 10 10 C 1.53037 * 109.24049 * 54.85912 * 9 8 7 11 11 C 1.50701 * 109.44890 * 178.50005 * 10 9 8 12 12 H 1.07998 * 120.00161 * 120.05523 * 11 10 9 13 13 C 1.37883 * 119.99635 * 300.06131 * 11 10 9 14 14 N 1.31516 * 120.00051 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99915 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47311 * 89.99713 * 15 13 11 17 17 H 1.48494 * 109.46869 * 209.99910 * 15 13 11 18 18 H 1.48503 * 109.46551 * 329.99482 * 15 13 11 19 19 C 1.53044 * 109.53846 * 298.50977 * 10 9 8 20 20 C 1.46933 * 120.62756 * 187.01789 * 7 5 4 21 21 C 1.41496 * 106.97393 * 359.97438 * 4 3 2 22 22 C 1.35061 * 124.88607 * 180.26363 * 2 1 3 23 23 Br 1.89106 * 126.39702 * 0.05503 * 22 2 1 24 24 H 1.08996 * 109.46956 * 90.02783 * 1 2 3 25 25 H 1.08999 * 109.47011 * 210.03094 * 1 2 3 26 26 H 1.09001 * 109.46549 * 330.02866 * 1 2 3 27 27 H 1.08998 * 109.59095 * 246.20171 * 8 7 5 28 28 H 1.09006 * 109.58726 * 6.62937 * 8 7 5 29 29 H 1.09003 * 109.63280 * 294.86451 * 9 8 7 30 30 H 1.09004 * 109.42876 * 174.72883 * 9 8 7 31 31 H 1.09000 * 109.46124 * 58.53013 * 10 9 8 32 32 H 0.96999 * 120.00199 * 179.97438 * 14 13 11 33 33 H 1.08999 * 109.49908 * 301.41925 * 19 10 9 34 34 H 1.08997 * 109.52359 * 181.33664 * 19 10 9 35 35 H 1.09000 * 109.58730 * 353.37693 * 20 7 5 36 36 H 1.09004 * 109.58500 * 113.65374 * 20 7 5 37 37 H 1.08007 * 127.25372 * 180.02562 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1998 1.0538 0.0000 4 6 3.4742 0.7175 0.0006 5 6 4.6269 1.6411 0.0013 6 8 5.7547 1.2057 -0.1267 7 7 4.4283 2.9665 0.1439 8 6 3.0911 3.4948 0.4464 9 6 3.1881 4.3838 1.6956 10 6 4.2519 5.4601 1.4674 11 6 4.3251 6.3575 2.6758 12 1 5.2490 6.4452 3.2281 13 6 3.2124 7.0665 3.0763 14 7 2.0875 6.9600 2.4034 15 14 3.3033 8.1795 4.5738 16 1 3.7141 9.5430 4.1529 17 1 1.9702 8.2430 5.2249 18 1 4.2979 7.6371 5.5339 19 6 5.6122 4.7957 1.2426 20 6 5.5437 3.9110 -0.0061 21 6 3.5282 -0.6965 0.0015 22 6 2.2375 -1.1079 -0.0051 23 35 1.6307 -2.8989 -0.0148 24 1 -0.3633 -0.0005 -1.0276 25 1 -0.3633 -0.8897 0.5143 26 1 -0.3632 0.8903 0.5134 27 1 2.7314 4.0837 -0.3974 28 1 2.4061 2.6685 0.6365 29 1 3.4645 3.7759 2.5571 30 1 2.2240 4.8582 1.8788 31 1 3.9876 6.0518 0.5910 32 1 1.3046 7.4585 2.6854 33 1 5.8658 4.1839 2.1083 34 1 6.3738 5.5630 1.1036 35 1 6.4776 3.3594 -0.1148 36 1 5.3812 4.5314 -0.8876 37 1 4.4123 -1.3170 0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362341256.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:17 Heat of formation + Delta-G solvation = 56.958302 kcal Electronic energy + Delta-G solvation = -21876.126763 eV Core-core repulsion = 18508.990686 eV Total energy + Delta-G solvation = -3367.136077 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.87197 -39.36189 -36.71967 -33.89517 -33.40339 -32.64157 -31.22825 -30.06535 -29.49225 -27.73938 -26.11537 -23.75567 -22.48315 -21.90893 -21.30091 -19.80841 -18.53394 -17.18861 -16.74720 -16.58550 -16.05540 -15.40805 -14.63108 -14.50594 -14.26850 -13.75689 -13.35727 -13.17764 -13.00761 -12.92587 -12.70663 -12.61209 -12.26104 -11.75563 -11.59515 -11.44896 -11.00058 -10.92334 -10.65833 -10.45169 -10.31759 -10.07339 -9.76373 -9.47657 -9.27589 -9.16915 -9.12607 -8.78316 -8.34085 -7.94409 -6.00298 -4.06170 0.84114 1.41163 1.82635 2.25451 3.29469 3.36261 3.40211 3.46115 3.61224 4.13516 4.42879 4.72763 4.78774 4.96501 5.09022 5.21357 5.29519 5.43136 5.75769 5.90734 6.00405 6.09536 6.18881 6.20676 6.27780 6.49306 6.66135 6.75901 6.95091 7.09064 7.21417 7.36166 7.63832 7.70266 7.95770 7.97412 8.08539 8.43854 8.53165 8.97209 9.58461 11.05050 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.020536 B = 0.002944 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.157001 B = 9508.167525 C =10406.514217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.269 5.269 3 N -0.225 5.225 4 C 0.001 3.999 5 C 0.595 3.405 6 O -0.549 6.549 7 N -0.584 5.584 8 C 0.085 3.915 9 C -0.121 4.121 10 C 0.047 3.953 11 C -0.511 4.511 12 H 0.055 0.945 13 C 0.061 3.939 14 N -0.891 5.891 15 Si 0.890 3.110 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.275 1.275 19 C -0.123 4.123 20 C 0.112 3.888 21 C -0.134 4.134 22 C -0.008 4.008 23 Br 0.022 6.978 24 H 0.091 0.909 25 H 0.096 0.904 26 H 0.107 0.893 27 H 0.059 0.941 28 H 0.107 0.893 29 H 0.036 0.964 30 H 0.103 0.897 31 H 0.027 0.973 32 H 0.259 0.741 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.321 -19.819 -6.897 21.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.059 5.059 3 N -0.062 5.062 4 C -0.159 4.159 5 C 0.381 3.619 6 O -0.426 6.426 7 N -0.314 5.314 8 C -0.038 4.038 9 C -0.159 4.159 10 C 0.029 3.971 11 C -0.549 4.549 12 H 0.073 0.927 13 C -0.140 4.140 14 N -0.531 5.531 15 Si 0.718 3.282 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.200 1.200 19 C -0.161 4.161 20 C -0.010 4.010 21 C -0.164 4.164 22 C -0.210 4.210 23 Br 0.104 6.896 24 H 0.109 0.891 25 H 0.115 0.885 26 H 0.126 0.874 27 H 0.077 0.923 28 H 0.124 0.876 29 H 0.055 0.945 30 H 0.121 0.879 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -6.991 -19.688 -6.964 22.022 hybrid contribution 0.354 0.408 0.881 1.033 sum -6.637 -19.280 -6.083 21.278 Atomic orbital electron populations 1.22349 0.72686 1.06176 1.05101 1.45765 1.08091 1.01719 1.50279 1.73827 1.03321 1.10984 1.18113 1.22062 0.90931 0.93654 1.09213 1.16891 0.86061 0.81543 0.77431 1.90741 1.22634 1.76810 1.52427 1.48104 1.11709 1.04700 1.66930 1.22784 0.81943 0.99495 0.99557 1.22075 1.04719 0.95956 0.93175 1.18659 0.88894 0.92477 0.97097 1.21222 0.96817 1.24859 1.11995 0.92719 1.24958 0.95517 0.96713 0.96790 1.69848 1.01321 1.42086 1.39820 0.86626 0.77262 0.81112 0.83193 1.20736 1.21304 1.19987 1.22004 1.01090 0.97625 0.95375 1.21772 0.89099 0.90902 0.99227 1.21628 0.95482 0.93865 1.05447 1.23102 0.93043 0.88146 1.16717 1.96764 1.89113 1.05609 1.98090 0.89052 0.88504 0.87405 0.92266 0.87619 0.94532 0.87906 0.95467 0.93067 0.92868 0.92056 0.90172 0.91923 0.81092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.57 11.10 59.85 0.66 1.23 16 2 N -0.27 -3.25 3.70 -66.32 -0.25 -3.50 16 3 N -0.23 -3.45 8.46 33.42 0.28 -3.17 16 4 C 0.00 0.01 6.82 -82.77 -0.56 -0.55 16 5 C 0.60 11.42 7.69 -12.39 -0.10 11.33 16 6 O -0.55 -11.49 16.36 5.30 0.09 -11.40 16 7 N -0.58 -11.32 2.97 -173.66 -0.52 -11.83 16 8 C 0.08 1.65 6.14 -3.49 -0.02 1.63 16 9 C -0.12 -2.78 5.17 -26.38 -0.14 -2.91 16 10 C 0.05 1.15 2.06 -91.73 -0.19 0.96 16 11 C -0.51 -13.79 8.56 -34.44 -0.29 -14.09 16 12 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 13 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 14 N -0.89 -24.64 11.31 55.43 0.63 -24.02 16 15 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 C -0.12 -2.58 5.30 -26.61 -0.14 -2.72 16 20 C 0.11 2.12 6.44 -3.71 -0.02 2.09 16 21 C -0.13 -1.88 10.79 -39.33 -0.42 -2.30 16 22 C -0.01 -0.09 7.33 -17.12 -0.13 -0.22 16 23 Br 0.02 0.19 33.28 -68.01 -2.26 -2.07 16 24 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.10 0.52 7.57 -51.93 -0.39 0.13 16 26 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.11 1.94 4.17 -70.33 -0.29 1.65 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.10 2.61 6.03 -51.93 -0.31 2.29 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.08 1.48 7.00 -51.93 -0.36 1.11 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.17 2.17 8.06 -52.48 -0.42 1.74 16 LS Contribution 323.64 15.07 4.88 4.88 Total: -1.00 -30.75 323.64 -8.33 -39.08 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -4.71 Total: 0.03 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -1.45 Total: -4.00 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 0.15 Total: -42.51 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 35 Polarization: 0.19 SS G_CDS: -2.26 Total: -2.07 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.75 -8.33 -39.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362341256.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.039 kcal (2) G-P(sol) polarization free energy of solvation -30.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds