Wall clock time and date at job start Tue Mar 31 2020 23:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28465 * 124.88538 * 2 1 4 4 C 1.31806 * 110.10111 * 179.97438 * 3 2 1 5 5 C 1.47716 * 126.51049 * 180.02562 * 4 3 2 6 6 O 1.21570 * 119.99619 * 187.00941 * 5 4 3 7 7 N 1.34772 * 119.99759 * 7.01310 * 5 4 3 8 8 C 1.46920 * 120.63584 * 6.73838 * 7 5 4 9 9 C 1.53630 * 108.54405 * 126.36898 * 8 7 5 10 10 C 1.53037 * 109.24049 * 54.85912 * 9 8 7 11 11 C 1.50701 * 109.44890 * 178.50005 * 10 9 8 12 12 H 1.07998 * 120.00161 * 120.05523 * 11 10 9 13 13 C 1.37883 * 119.99635 * 300.06131 * 11 10 9 14 14 N 1.31516 * 120.00051 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99915 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47311 * 89.99713 * 15 13 11 17 17 H 1.48494 * 109.46869 * 209.99910 * 15 13 11 18 18 H 1.48503 * 109.46551 * 329.99482 * 15 13 11 19 19 C 1.53044 * 109.53846 * 298.50977 * 10 9 8 20 20 C 1.46933 * 120.62756 * 187.01789 * 7 5 4 21 21 C 1.41496 * 106.97393 * 359.97438 * 4 3 2 22 22 C 1.35061 * 124.88607 * 180.26363 * 2 1 3 23 23 Br 1.89106 * 126.39702 * 0.05503 * 22 2 1 24 24 H 1.08996 * 109.46956 * 90.02783 * 1 2 3 25 25 H 1.08999 * 109.47011 * 210.03094 * 1 2 3 26 26 H 1.09001 * 109.46549 * 330.02866 * 1 2 3 27 27 H 1.08998 * 109.59095 * 246.20171 * 8 7 5 28 28 H 1.09006 * 109.58726 * 6.62937 * 8 7 5 29 29 H 1.09003 * 109.63280 * 294.86451 * 9 8 7 30 30 H 1.09004 * 109.42876 * 174.72883 * 9 8 7 31 31 H 1.09000 * 109.46124 * 58.53013 * 10 9 8 32 32 H 0.96999 * 120.00199 * 179.97438 * 14 13 11 33 33 H 1.08999 * 109.49908 * 301.41925 * 19 10 9 34 34 H 1.08997 * 109.52359 * 181.33664 * 19 10 9 35 35 H 1.09000 * 109.58730 * 353.37693 * 20 7 5 36 36 H 1.09004 * 109.58500 * 113.65374 * 20 7 5 37 37 H 1.08007 * 127.25372 * 180.02562 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1998 1.0538 0.0000 4 6 3.4742 0.7175 0.0006 5 6 4.6269 1.6411 0.0013 6 8 5.7547 1.2057 -0.1267 7 7 4.4283 2.9665 0.1439 8 6 3.0911 3.4948 0.4464 9 6 3.1881 4.3838 1.6956 10 6 4.2519 5.4601 1.4674 11 6 4.3251 6.3575 2.6758 12 1 5.2490 6.4452 3.2281 13 6 3.2124 7.0665 3.0763 14 7 2.0875 6.9600 2.4034 15 14 3.3033 8.1795 4.5738 16 1 3.7141 9.5430 4.1529 17 1 1.9702 8.2430 5.2249 18 1 4.2979 7.6371 5.5339 19 6 5.6122 4.7957 1.2426 20 6 5.5437 3.9110 -0.0061 21 6 3.5282 -0.6965 0.0015 22 6 2.2375 -1.1079 -0.0051 23 35 1.6307 -2.8989 -0.0148 24 1 -0.3633 -0.0005 -1.0276 25 1 -0.3633 -0.8897 0.5143 26 1 -0.3632 0.8903 0.5134 27 1 2.7314 4.0837 -0.3974 28 1 2.4061 2.6685 0.6365 29 1 3.4645 3.7759 2.5571 30 1 2.2240 4.8582 1.8788 31 1 3.9876 6.0518 0.5910 32 1 1.3046 7.4585 2.6854 33 1 5.8658 4.1839 2.1083 34 1 6.3738 5.5630 1.1036 35 1 6.4776 3.3594 -0.1148 36 1 5.3812 4.5314 -0.8876 37 1 4.4123 -1.3170 0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362341256.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:16 Heat of formation + Delta-G solvation = 39.005503 kcal Electronic energy + Delta-G solvation = -21876.905255 eV Core-core repulsion = 18508.990686 eV Total energy + Delta-G solvation = -3367.914569 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.92353 -40.89500 -38.40030 -35.41783 -34.72566 -33.61340 -32.96256 -31.73448 -30.52301 -28.87054 -27.78570 -25.29390 -24.10395 -23.40104 -22.39099 -21.36756 -20.04646 -18.50001 -18.29676 -17.73796 -17.60054 -16.87443 -16.48227 -16.06623 -15.23385 -15.07336 -14.90979 -14.62419 -14.41052 -14.29667 -14.03903 -13.70020 -13.56644 -13.31851 -13.22110 -12.81929 -12.47975 -12.44298 -12.21751 -12.13606 -11.87358 -11.59817 -11.45884 -11.21948 -10.99303 -10.64969 -10.38021 -10.33522 -10.10195 -9.56486 -8.06759 -6.20136 -0.05701 0.29864 0.69482 1.36948 1.41815 1.43306 1.52718 2.05094 2.22680 2.44837 3.08199 3.19651 3.61579 4.03794 4.15658 4.26104 4.28416 4.30452 4.36712 4.41480 4.52071 4.58626 4.59019 4.76374 4.87462 4.97748 5.10047 5.19546 5.24925 5.40653 5.43605 5.61563 5.67122 5.98957 6.11887 6.35242 6.40772 6.60319 6.89190 7.05209 7.47202 8.96833 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.020536 B = 0.002944 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.157001 B = 9508.167525 C =10406.514217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.257 5.257 3 N -0.242 5.242 4 C -0.030 4.030 5 C 0.595 3.405 6 O -0.572 6.572 7 N -0.590 5.590 8 C 0.099 3.901 9 C -0.109 4.109 10 C 0.045 3.955 11 C -0.535 4.535 12 H 0.048 0.952 13 C 0.017 3.983 14 N -0.912 5.912 15 Si 0.950 3.050 16 H -0.276 1.276 17 H -0.282 1.282 18 H -0.274 1.274 19 C -0.113 4.113 20 C 0.116 3.884 21 C -0.146 4.146 22 C -0.001 4.001 23 Br 0.061 6.939 24 H 0.114 0.886 25 H 0.120 0.880 26 H 0.112 0.888 27 H 0.060 0.940 28 H 0.123 0.877 29 H 0.020 0.980 30 H 0.079 0.921 31 H 0.005 0.995 32 H 0.261 0.739 33 H 0.041 0.959 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.458 -21.270 -7.018 23.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.048 5.048 3 N -0.081 5.081 4 C -0.188 4.188 5 C 0.382 3.618 6 O -0.451 6.451 7 N -0.321 5.321 8 C -0.023 4.023 9 C -0.148 4.148 10 C 0.026 3.974 11 C -0.573 4.573 12 H 0.066 0.934 13 C -0.182 4.182 14 N -0.551 5.551 15 Si 0.776 3.224 16 H -0.202 1.202 17 H -0.207 1.207 18 H -0.198 1.198 19 C -0.151 4.151 20 C -0.006 4.006 21 C -0.176 4.176 22 C -0.204 4.204 23 Br 0.143 6.857 24 H 0.132 0.868 25 H 0.139 0.861 26 H 0.131 0.869 27 H 0.078 0.922 28 H 0.140 0.860 29 H 0.039 0.961 30 H 0.097 0.903 31 H 0.023 0.977 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -8.132 -21.139 -7.090 23.733 hybrid contribution 0.600 0.739 0.904 1.313 sum -7.532 -20.399 -6.186 22.608 Atomic orbital electron populations 1.22832 0.69944 1.07665 1.07114 1.46149 1.09505 1.01088 1.48012 1.73595 1.03098 1.12593 1.18839 1.21765 0.90757 0.94260 1.11991 1.17207 0.86659 0.81478 0.76440 1.90709 1.23823 1.77125 1.53422 1.48126 1.11477 1.05145 1.67340 1.22588 0.82610 0.99416 0.97692 1.21840 1.02872 0.95777 0.94334 1.18625 0.91011 0.92506 0.95220 1.21551 0.96791 1.25926 1.13058 0.93381 1.25654 0.95240 0.97964 0.99322 1.69961 1.01695 1.42553 1.40911 0.85682 0.77317 0.79367 0.80021 1.20197 1.20740 1.19849 1.21854 0.99419 0.97808 0.96049 1.21724 0.89582 0.90801 0.98498 1.21779 0.96901 0.92894 1.06029 1.23344 0.92465 0.89785 1.14794 1.96815 1.88558 1.02390 1.97931 0.86753 0.86119 0.86921 0.92191 0.86043 0.96097 0.90276 0.97708 0.92933 0.94053 0.91211 0.89463 0.90583 0.80398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.74 11.10 127.77 1.42 2.16 16 2 N -0.26 -5.69 3.70 -363.74 -1.35 -7.04 16 3 N -0.24 -7.16 8.46 -48.18 -0.41 -7.57 16 4 C -0.03 -1.00 6.82 42.46 0.29 -0.71 16 5 C 0.59 22.88 7.69 86.75 0.67 23.55 16 6 O -0.57 -24.04 16.36 -3.93 -0.06 -24.10 16 7 N -0.59 -22.99 2.97 -821.60 -2.44 -25.43 16 8 C 0.10 3.92 6.14 86.51 0.53 4.45 16 9 C -0.11 -5.17 5.17 30.82 0.16 -5.01 16 10 C 0.04 2.24 2.06 -11.51 -0.02 2.21 16 11 C -0.54 -29.46 8.56 25.60 0.22 -29.25 16 12 H 0.05 2.64 7.74 -2.91 -0.02 2.61 16 13 C 0.02 0.93 5.30 84.66 0.45 1.38 16 14 N -0.91 -51.04 11.31 21.45 0.24 -50.79 16 15 Si 0.95 43.29 29.54 68.60 2.03 45.32 16 16 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 19 C -0.11 -4.82 5.30 30.67 0.16 -4.66 16 20 C 0.12 4.38 6.44 86.36 0.56 4.94 16 21 C -0.15 -3.94 10.79 22.43 0.24 -3.70 16 22 C 0.00 -0.01 7.33 83.56 0.61 0.60 16 23 Br 0.06 0.88 33.28 -20.37 -0.68 0.20 16 24 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.12 0.87 7.57 -2.39 -0.02 0.86 16 26 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.12 4.46 4.17 -26.19 -0.11 4.35 16 29 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 4.12 6.03 -2.38 -0.01 4.11 16 31 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 33 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.09 3.20 7.00 -2.39 -0.02 3.18 16 36 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.18 4.37 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -66.54 323.64 3.61 -62.93 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.99 Total: 10.52 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 5.28 Total: -4.04 kcal Atomic # 7 Polarization: -86.88 SS G_CDS: -3.95 Total: -90.83 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.06 Total: -24.10 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 35 Polarization: 0.88 SS G_CDS: -0.68 Total: 0.20 kcal Total: -66.54 3.61 -62.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362341256.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.937 kcal (2) G-P(sol) polarization free energy of solvation -66.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds