Wall clock time and date at job start Tue Mar 31 2020 23:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86797 * 120.00152 * 2 1 4 4 H 1.48503 * 109.47228 * 270.00515 * 3 2 1 5 5 H 1.48500 * 109.47328 * 30.00567 * 3 2 1 6 6 H 1.48500 * 109.47166 * 150.00428 * 3 2 1 7 7 C 1.38641 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00072 * 359.97438 * 7 2 1 9 9 O 1.34801 * 120.00048 * 179.97438 * 7 2 1 10 10 C 1.35771 * 117.00162 * 174.95330 * 9 7 2 11 11 C 1.38736 * 120.09004 * 5.43488 * 10 9 7 12 12 C 1.38339 * 119.98118 * 180.02562 * 11 10 9 13 13 F 1.35100 * 119.91907 * 179.97438 * 12 11 10 14 14 C 1.38554 * 120.16253 * 0.02920 * 12 11 10 15 15 C 1.38189 * 120.17357 * 359.69740 * 14 12 11 16 16 C 1.38733 * 120.01894 * 0.54885 * 15 14 12 17 17 N 1.39991 * 120.07954 * 179.74908 * 16 15 14 18 18 C 1.34779 * 119.99680 * 34.60710 * 17 16 15 19 19 O 1.21634 * 120.00330 * 355.61943 * 18 17 16 20 20 C 1.47073 * 119.99893 * 175.61603 * 18 17 16 21 21 C 1.30988 * 121.56520 * 179.97438 * 20 18 17 22 22 C 1.51282 * 116.87172 * 180.02562 * 21 20 18 23 23 S 1.83607 * 103.24058 * 343.04925 * 22 21 20 24 24 O 1.42098 * 109.90738 * 135.00154 * 23 22 21 25 25 O 1.42100 * 109.90947 * 269.61567 * 23 22 21 26 26 C 1.51280 * 121.56393 * 0.02562 * 20 18 17 27 27 H 0.97002 * 120.00055 * 359.97438 * 1 2 3 28 28 H 1.08006 * 120.00522 * 0.02562 * 11 10 9 29 29 H 1.07996 * 119.91508 * 179.97438 * 14 12 11 30 30 H 1.08004 * 119.98702 * 180.28451 * 15 14 12 31 31 H 0.96997 * 120.00011 * 214.61628 * 17 16 15 32 32 H 1.07996 * 121.56645 * 0.02562 * 21 20 18 33 33 H 1.08998 * 110.69421 * 101.53441 * 22 21 20 34 34 H 1.08997 * 110.69488 * 224.56619 * 22 21 20 35 35 H 1.09006 * 110.69283 * 315.24469 * 26 20 18 36 36 H 1.08998 * 110.69474 * 78.26833 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4472 2.6526 0.7001 6 1 3.5473 1.4401 0.6999 7 6 2.0088 -1.2007 -0.0005 8 1 1.4688 -2.1360 -0.0005 9 8 3.3568 -1.2007 -0.0011 10 6 3.9733 -2.4058 0.1048 11 6 3.2243 -3.5735 0.0939 12 6 3.8547 -4.8002 0.2025 13 9 3.1240 -5.9365 0.1921 14 6 5.2334 -4.8661 0.3229 15 6 5.9863 -3.7074 0.3289 16 6 5.3614 -2.4731 0.2256 17 7 6.1224 -1.2982 0.2368 18 6 7.3447 -1.2817 -0.3308 19 8 7.8197 -2.3065 -0.7820 20 6 8.1042 -0.0244 -0.4048 21 6 9.2945 0.0267 -0.9492 22 6 9.9806 1.3748 -0.9680 23 16 8.6065 2.5504 -0.6501 24 8 9.0084 3.5156 0.3122 25 8 8.0275 2.9621 -1.8807 26 6 7.5478 1.2704 0.1453 27 1 -0.4850 0.8401 0.0004 28 1 2.1494 -3.5249 0.0006 29 1 5.7213 -5.8258 0.4078 30 1 7.0612 -3.7625 0.4183 31 1 5.7701 -0.4961 0.6532 32 1 9.7641 -0.8524 -1.3652 33 1 10.7304 1.4364 -0.1793 34 1 10.4317 1.5639 -1.9421 35 1 6.5055 1.3969 -0.1475 36 1 7.6484 1.3027 1.2301 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362555686.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:17 Heat of formation + Delta-G solvation = -115.520202 kcal Electronic energy + Delta-G solvation = -26938.940708 eV Core-core repulsion = 22625.043738 eV Total energy + Delta-G solvation = -4313.896970 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.061 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.38637 -40.61006 -39.12366 -37.53430 -37.05661 -36.46893 -36.21312 -34.49414 -32.60366 -30.52502 -29.69970 -28.52956 -26.93511 -25.54185 -23.46865 -22.03671 -21.25628 -19.48061 -19.39727 -18.50181 -18.26063 -17.72859 -16.95445 -16.65381 -16.43677 -15.81795 -15.66036 -15.43751 -15.17184 -15.01446 -14.58150 -14.21428 -14.13478 -13.94319 -13.89743 -13.73093 -13.48228 -13.35981 -12.84605 -12.55792 -12.52249 -12.46443 -12.43971 -11.99841 -11.64350 -11.53672 -11.06847 -10.95936 -10.88570 -10.54618 -10.05670 -9.89539 -9.86830 -9.65377 -9.09067 -8.10612 -7.41411 -6.62935 -4.30821 -0.45755 0.76388 1.65859 1.89954 1.91833 2.94357 3.02922 3.05656 3.09707 3.12313 3.18523 3.57599 3.92200 4.00528 4.03369 4.11934 4.40466 4.49904 4.65684 4.76587 4.83837 4.87898 4.88118 5.06920 5.38875 5.47095 5.57844 5.72694 5.79875 5.93869 6.26590 6.59588 6.70013 6.73388 6.79645 7.33584 7.46770 7.56851 7.77598 8.12449 8.69315 9.22480 10.43947 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.009926 B = 0.004447 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.185517 B = 6294.508613 C = 8877.598882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.068 3.932 3 Si 0.901 3.099 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.394 4.394 8 H 0.110 0.890 9 O -0.206 6.206 10 C 0.168 3.832 11 C -0.246 4.246 12 C 0.135 3.865 13 F -0.147 7.147 14 C -0.224 4.224 15 C -0.047 4.047 16 C 0.050 3.950 17 N -0.641 5.641 18 C 0.561 3.439 19 O -0.525 6.525 20 C -0.154 4.154 21 C -0.056 4.056 22 C -0.563 4.563 23 S 2.389 3.611 24 O -0.924 6.924 25 O -0.916 6.916 26 C -0.560 4.560 27 H 0.283 0.717 28 H 0.151 0.849 29 H 0.126 0.874 30 H 0.144 0.856 31 H 0.413 0.587 32 H 0.162 0.838 33 H 0.158 0.842 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.158 1.968 1.267 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.137 4.137 3 Si 0.726 3.274 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.468 4.468 8 H 0.128 0.872 9 O -0.110 6.110 10 C 0.113 3.887 11 C -0.267 4.267 12 C 0.115 3.885 13 F -0.126 7.126 14 C -0.244 4.244 15 C -0.067 4.067 16 C -0.044 4.044 17 N -0.284 5.284 18 C 0.348 3.652 19 O -0.404 6.404 20 C -0.158 4.158 21 C -0.077 4.077 22 C -0.691 4.691 23 S 2.570 3.430 24 O -0.921 6.921 25 O -0.913 6.913 26 C -0.688 4.688 27 H 0.094 0.906 28 H 0.168 0.832 29 H 0.144 0.856 30 H 0.161 0.839 31 H 0.250 0.750 32 H 0.179 0.821 33 H 0.176 0.824 34 H 0.169 0.831 35 H 0.168 0.832 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 18.175 2.654 0.726 18.382 hybrid contribution -0.279 -0.050 0.329 0.434 sum 17.897 2.605 1.055 18.116 Atomic orbital electron populations 1.69632 1.05579 1.28887 1.46246 1.24473 0.95053 0.98815 0.95366 0.86265 0.80167 0.81591 0.79332 1.19360 1.20348 1.18570 1.20777 0.76260 0.96947 1.52860 0.87247 1.83505 1.23250 1.24810 1.79460 1.18520 0.89611 0.85881 0.94640 1.20991 1.02205 0.90041 1.13437 1.17489 0.89065 0.81338 1.00566 1.91437 1.77857 1.49373 1.93912 1.20552 0.91549 0.99078 1.13228 1.20646 1.00221 0.89229 0.96570 1.16844 0.87190 0.86375 1.14021 1.42969 1.16280 1.13449 1.55746 1.17758 0.81492 0.87806 0.78134 1.90791 1.68754 1.33242 1.47578 1.20570 0.96776 0.94275 1.04222 1.22697 0.92562 0.98109 0.94316 1.29713 1.17407 1.08819 1.13117 1.09349 0.79377 0.77745 0.76520 1.93655 1.80869 1.56063 1.61553 1.93691 1.75129 1.80085 1.42404 1.29725 1.15970 1.09725 1.13334 0.90648 0.83191 0.85576 0.83882 0.75048 0.82090 0.82396 0.83090 0.83199 0.82437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.55 13.96 55.48 0.77 -22.77 16 2 C 0.07 1.77 5.49 -17.52 -0.10 1.67 16 3 Si 0.90 19.55 28.62 -169.99 -4.86 14.69 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.39 -10.17 9.95 30.88 0.31 -9.86 16 8 H 0.11 2.94 5.44 -52.49 -0.29 2.65 16 9 O -0.21 -4.80 8.15 0.07 0.00 -4.79 16 10 C 0.17 3.55 6.67 -38.93 -0.26 3.29 16 11 C -0.25 -5.10 9.14 -39.36 -0.36 -5.46 16 12 C 0.14 2.54 7.29 -39.43 -0.29 2.25 16 13 F -0.15 -2.70 17.26 2.25 0.04 -2.66 16 14 C -0.22 -3.78 10.02 -39.48 -0.40 -4.17 16 15 C -0.05 -0.80 8.69 -39.42 -0.34 -1.14 16 16 C 0.05 0.91 6.33 -83.48 -0.53 0.39 16 17 N -0.64 -10.09 5.16 -10.79 -0.06 -10.14 16 18 C 0.56 8.03 7.61 -12.68 -0.10 7.94 16 19 O -0.53 -8.66 13.80 5.25 0.07 -8.58 16 20 C -0.15 -1.57 5.89 -102.47 -0.60 -2.17 16 21 C -0.06 -0.44 9.88 -35.74 -0.35 -0.79 16 22 C -0.56 -2.82 7.38 36.29 0.27 -2.55 16 23 S 2.39 19.62 6.36 -107.50 -0.68 18.94 16 24 O -0.92 -10.03 18.17 -57.65 -1.05 -11.07 16 25 O -0.92 -11.36 18.17 -57.65 -1.05 -12.41 16 26 C -0.56 -4.66 6.41 36.29 0.23 -4.42 16 27 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.15 3.27 5.64 -52.48 -0.30 2.98 16 29 H 0.13 1.81 8.06 -52.49 -0.42 1.38 16 30 H 0.14 2.29 6.19 -52.48 -0.32 1.96 16 31 H 0.41 5.89 7.29 -40.82 -0.30 5.60 16 32 H 0.16 1.21 7.67 -52.49 -0.40 0.81 16 33 H 0.16 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.15 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.15 1.33 7.71 -51.93 -0.40 0.93 16 36 H 0.16 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 332.43 15.07 5.01 5.01 Total: -1.00 -33.84 332.43 -7.15 -40.99 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -2.83 Total: 7.85 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -2.51 Total: -15.04 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 0.72 Total: -32.92 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -2.02 Total: -36.86 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.04 Total: -2.66 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.86 Total: 14.69 kcal Atomic # 16 Polarization: 19.62 SS G_CDS: -0.68 Total: 18.94 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.84 -7.15 -40.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362555686.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.535 kcal (2) G-P(sol) polarization free energy of solvation -33.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds