Wall clock time and date at job start Tue Mar 31 2020 23:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86797 * 120.00152 * 2 1 4 4 H 1.48503 * 109.47228 * 270.00515 * 3 2 1 5 5 H 1.48500 * 109.47328 * 30.00567 * 3 2 1 6 6 H 1.48500 * 109.47166 * 150.00428 * 3 2 1 7 7 C 1.38641 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00072 * 359.97438 * 7 2 1 9 9 O 1.34801 * 120.00048 * 179.97438 * 7 2 1 10 10 C 1.35771 * 117.00162 * 174.95330 * 9 7 2 11 11 C 1.38736 * 120.09004 * 5.43488 * 10 9 7 12 12 C 1.38339 * 119.98118 * 180.02562 * 11 10 9 13 13 F 1.35100 * 119.91907 * 179.97438 * 12 11 10 14 14 C 1.38554 * 120.16253 * 0.02920 * 12 11 10 15 15 C 1.38189 * 120.17357 * 359.69740 * 14 12 11 16 16 C 1.38733 * 120.01894 * 0.54885 * 15 14 12 17 17 N 1.39991 * 120.07954 * 179.74908 * 16 15 14 18 18 C 1.34779 * 119.99680 * 34.60710 * 17 16 15 19 19 O 1.21634 * 120.00330 * 355.61943 * 18 17 16 20 20 C 1.47073 * 119.99893 * 175.61603 * 18 17 16 21 21 C 1.30988 * 121.56520 * 179.97438 * 20 18 17 22 22 C 1.51282 * 116.87172 * 180.02562 * 21 20 18 23 23 S 1.83607 * 103.24058 * 343.04925 * 22 21 20 24 24 O 1.42098 * 109.90738 * 135.00154 * 23 22 21 25 25 O 1.42100 * 109.90947 * 269.61567 * 23 22 21 26 26 C 1.51280 * 121.56393 * 0.02562 * 20 18 17 27 27 H 0.97002 * 120.00055 * 359.97438 * 1 2 3 28 28 H 1.08006 * 120.00522 * 0.02562 * 11 10 9 29 29 H 1.07996 * 119.91508 * 179.97438 * 14 12 11 30 30 H 1.08004 * 119.98702 * 180.28451 * 15 14 12 31 31 H 0.96997 * 120.00011 * 214.61628 * 17 16 15 32 32 H 1.07996 * 121.56645 * 0.02562 * 21 20 18 33 33 H 1.08998 * 110.69421 * 101.53441 * 22 21 20 34 34 H 1.08997 * 110.69488 * 224.56619 * 22 21 20 35 35 H 1.09006 * 110.69283 * 315.24469 * 26 20 18 36 36 H 1.08998 * 110.69474 * 78.26833 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4472 2.6526 0.7001 6 1 3.5473 1.4401 0.6999 7 6 2.0088 -1.2007 -0.0005 8 1 1.4688 -2.1360 -0.0005 9 8 3.3568 -1.2007 -0.0011 10 6 3.9733 -2.4058 0.1048 11 6 3.2243 -3.5735 0.0939 12 6 3.8547 -4.8002 0.2025 13 9 3.1240 -5.9365 0.1921 14 6 5.2334 -4.8661 0.3229 15 6 5.9863 -3.7074 0.3289 16 6 5.3614 -2.4731 0.2256 17 7 6.1224 -1.2982 0.2368 18 6 7.3447 -1.2817 -0.3308 19 8 7.8197 -2.3065 -0.7820 20 6 8.1042 -0.0244 -0.4048 21 6 9.2945 0.0267 -0.9492 22 6 9.9806 1.3748 -0.9680 23 16 8.6065 2.5504 -0.6501 24 8 9.0084 3.5156 0.3122 25 8 8.0275 2.9621 -1.8807 26 6 7.5478 1.2704 0.1453 27 1 -0.4850 0.8401 0.0004 28 1 2.1494 -3.5249 0.0006 29 1 5.7213 -5.8258 0.4078 30 1 7.0612 -3.7625 0.4183 31 1 5.7701 -0.4961 0.6532 32 1 9.7641 -0.8524 -1.3652 33 1 10.7304 1.4364 -0.1793 34 1 10.4317 1.5639 -1.9421 35 1 6.5055 1.3969 -0.1475 36 1 7.6484 1.3027 1.2301 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362555686.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:17 Heat of formation + Delta-G solvation = -141.219776 kcal Electronic energy + Delta-G solvation = -26940.055125 eV Core-core repulsion = 22625.043738 eV Total energy + Delta-G solvation = -4315.011387 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.061 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.89242 -41.88769 -40.55728 -38.43070 -38.21706 -37.42367 -37.05965 -35.78891 -34.51190 -31.46029 -31.11815 -29.79309 -27.70868 -27.32083 -24.68867 -23.55432 -22.55447 -20.51041 -20.20062 -20.01837 -19.65172 -18.91065 -18.25282 -17.42045 -17.34831 -17.18660 -16.89745 -16.63662 -16.50401 -16.17983 -15.91739 -15.65175 -15.60652 -15.31420 -15.05280 -14.65350 -14.39624 -14.30047 -14.24940 -13.88873 -13.63497 -13.51088 -13.29536 -13.23151 -13.15192 -12.67889 -12.46132 -12.34700 -12.16367 -11.69117 -11.58504 -11.30431 -10.98567 -10.93804 -10.57243 -9.67356 -8.92401 -8.55221 -6.29754 -1.07385 -0.12778 0.27857 0.36821 1.30228 1.31828 1.35834 1.45637 1.89967 1.99890 2.22143 2.49483 2.56488 2.76524 2.95400 2.96131 3.28271 3.29575 3.33303 3.82599 3.92461 4.06370 4.12359 4.22921 4.24984 4.29887 4.49415 4.60046 4.80287 4.84951 5.04104 5.13256 5.16484 5.23434 5.37628 5.56064 5.77110 6.01399 6.32126 6.76395 6.94520 7.38313 8.55514 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.009926 B = 0.004447 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.185517 B = 6294.508613 C = 8877.598882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.016 3.984 3 Si 0.955 3.045 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.235 1.235 7 C -0.402 4.402 8 H 0.081 0.919 9 O -0.220 6.220 10 C 0.142 3.858 11 C -0.259 4.259 12 C 0.123 3.877 13 F -0.145 7.145 14 C -0.194 4.194 15 C -0.046 4.046 16 C 0.063 3.937 17 N -0.648 5.648 18 C 0.563 3.437 19 O -0.549 6.549 20 C -0.183 4.183 21 C -0.025 4.025 22 C -0.532 4.532 23 S 2.399 3.601 24 O -0.954 6.954 25 O -0.965 6.965 26 C -0.561 4.561 27 H 0.286 0.714 28 H 0.127 0.873 29 H 0.163 0.837 30 H 0.164 0.836 31 H 0.419 0.581 32 H 0.172 0.828 33 H 0.198 0.802 34 H 0.181 0.819 35 H 0.140 0.860 36 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.745 1.937 1.540 22.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.183 4.183 3 Si 0.776 3.224 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.158 1.158 7 C -0.478 4.478 8 H 0.098 0.902 9 O -0.126 6.126 10 C 0.089 3.911 11 C -0.279 4.279 12 C 0.103 3.897 13 F -0.124 7.124 14 C -0.213 4.213 15 C -0.066 4.066 16 C -0.032 4.032 17 N -0.292 5.292 18 C 0.352 3.648 19 O -0.429 6.429 20 C -0.187 4.187 21 C -0.046 4.046 22 C -0.663 4.663 23 S 2.585 3.415 24 O -0.951 6.951 25 O -0.962 6.962 26 C -0.689 4.689 27 H 0.096 0.904 28 H 0.144 0.856 29 H 0.181 0.819 30 H 0.182 0.818 31 H 0.257 0.743 32 H 0.189 0.811 33 H 0.215 0.785 34 H 0.199 0.801 35 H 0.158 0.842 36 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 22.781 2.628 1.013 22.955 hybrid contribution -1.430 -0.349 0.225 1.489 sum 21.351 2.279 1.238 21.508 Atomic orbital electron populations 1.69726 1.07166 1.29869 1.48826 1.25278 0.95809 1.02198 0.95054 0.85447 0.80162 0.77245 0.79553 1.19440 1.19511 1.15798 1.20640 0.77609 0.96216 1.53325 0.90156 1.83461 1.21503 1.25666 1.81946 1.18889 0.90880 0.85390 0.95912 1.20991 1.01399 0.91430 1.14120 1.17549 0.89964 0.80644 1.01543 1.91440 1.78046 1.48954 1.93973 1.20979 0.90370 1.00724 1.09277 1.20951 1.01138 0.88566 0.95923 1.17057 0.86347 0.88184 1.11581 1.43101 1.16766 1.12827 1.56521 1.18333 0.80700 0.89022 0.76707 1.90762 1.69144 1.34557 1.48413 1.20319 0.97723 0.93067 1.07576 1.23020 0.91346 0.99533 0.90686 1.29650 1.15831 1.04596 1.16212 1.08837 0.79818 0.77887 0.75005 1.93616 1.81348 1.58020 1.62104 1.93632 1.76816 1.81589 1.44183 1.29755 1.15508 1.08653 1.14975 0.90394 0.85566 0.81919 0.81844 0.74346 0.81104 0.78504 0.80118 0.84194 0.80025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.41 13.96 21.61 0.30 -52.11 16 2 C 0.02 0.89 5.49 84.83 0.47 1.36 16 3 Si 0.96 40.78 28.62 68.60 1.96 42.74 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.24 -8.87 7.11 99.48 0.71 -8.17 16 7 C -0.40 -21.98 9.95 67.92 0.68 -21.31 16 8 H 0.08 4.71 5.44 -2.91 -0.02 4.70 16 9 O -0.22 -10.55 8.15 -22.68 -0.18 -10.73 16 10 C 0.14 6.09 6.67 22.69 0.15 6.24 16 11 C -0.26 -11.14 9.14 22.41 0.20 -10.93 16 12 C 0.12 4.54 7.29 22.37 0.16 4.70 16 13 F -0.15 -5.26 17.26 44.97 0.78 -4.48 16 14 C -0.19 -5.99 10.02 22.33 0.22 -5.77 16 15 C -0.05 -1.44 8.69 22.38 0.19 -1.25 16 16 C 0.06 2.26 6.33 38.26 0.24 2.50 16 17 N -0.65 -19.39 5.16 -306.30 -1.58 -20.97 16 18 C 0.56 14.74 7.61 86.56 0.66 15.39 16 19 O -0.55 -16.50 13.80 -4.14 -0.06 -16.56 16 20 C -0.18 -3.14 5.89 -17.39 -0.10 -3.24 16 21 C -0.03 -0.28 9.88 25.84 0.26 -0.02 16 22 C -0.53 -2.49 7.38 71.42 0.53 -1.97 16 23 S 2.40 33.46 6.36 -56.49 -0.36 33.10 16 24 O -0.95 -18.66 18.17 -127.54 -2.32 -20.98 16 25 O -0.97 -22.77 18.17 -127.54 -2.32 -25.09 16 26 C -0.56 -7.99 6.41 71.42 0.46 -7.53 16 27 H 0.29 15.06 8.31 -92.71 -0.77 14.29 16 28 H 0.13 6.00 5.64 -2.91 -0.02 5.99 16 29 H 0.16 3.90 8.06 -2.91 -0.02 3.87 16 30 H 0.16 4.62 6.19 -2.91 -0.02 4.60 16 31 H 0.42 11.45 7.29 -92.71 -0.68 10.77 16 32 H 0.17 1.70 7.67 -2.91 -0.02 1.68 16 33 H 0.20 -0.32 8.14 -2.39 -0.02 -0.34 16 34 H 0.18 0.05 8.14 -2.39 -0.02 0.03 16 35 H 0.14 2.30 7.71 -2.38 -0.02 2.28 16 36 H 0.18 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -77.60 332.43 0.85 -76.75 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.50 Total: 20.15 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 4.12 Total: -21.82 kcal Atomic # 7 Polarization: -71.81 SS G_CDS: -1.28 Total: -73.08 kcal Atomic # 8 Polarization: -68.48 SS G_CDS: -4.88 Total: -73.35 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 0.78 Total: -4.48 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 1.96 Total: 42.74 kcal Atomic # 16 Polarization: 33.46 SS G_CDS: -0.36 Total: 33.10 kcal Total: -77.60 0.85 -76.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362555686.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.467 kcal (2) G-P(sol) polarization free energy of solvation -77.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds