Wall clock time and date at job start Tue Mar 31 2020 23:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34778 * 120.00046 * 2 1 4 4 O 1.21553 * 120.00384 * 183.87724 * 3 2 1 5 5 C 1.47860 * 119.99854 * 3.87177 * 3 2 1 6 6 C 1.39673 * 120.10270 * 328.59401 * 5 3 2 7 7 C 1.38040 * 120.03637 * 179.97438 * 6 5 3 8 8 C 1.38183 * 120.24957 * 359.97438 * 7 6 5 9 9 C 1.39177 * 120.19542 * 359.97438 * 8 7 6 10 10 S 1.76204 * 120.01685 * 180.02562 * 9 8 7 11 11 C 1.76201 * 100.00123 * 267.29886 * 10 9 8 12 12 H 1.07994 * 119.99911 * 5.37672 * 11 10 9 13 13 C 1.38730 * 120.00001 * 185.38559 * 11 10 9 14 14 N 1.31624 * 120.00111 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 120.00079 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47275 * 89.99539 * 15 13 11 17 17 H 1.48504 * 109.47273 * 209.99715 * 15 13 11 18 18 H 1.48495 * 109.47273 * 329.99759 * 15 13 11 19 19 C 1.38873 * 119.96527 * 0.02658 * 9 8 7 20 20 C 1.46506 * 120.00217 * 180.02562 * 2 1 3 21 21 C 1.53037 * 113.15062 * 40.36832 * 20 2 1 22 22 S 1.81428 * 89.89015 * 211.85745 * 21 20 2 23 23 O 1.42097 * 112.75340 * 280.47925 * 22 21 20 24 24 O 1.42099 * 112.83650 * 136.71572 * 22 21 20 25 25 C 1.53045 * 113.14350 * 299.99324 * 20 2 1 26 26 H 1.08994 * 109.47097 * 94.41304 * 1 2 3 27 27 H 1.09004 * 109.46876 * 214.41409 * 1 2 3 28 28 H 1.09002 * 109.46832 * 334.41220 * 1 2 3 29 29 H 1.07991 * 119.98132 * 359.97438 * 6 5 3 30 30 H 1.08001 * 119.87695 * 179.97438 * 7 6 5 31 31 H 1.07997 * 119.90104 * 179.97438 * 8 7 6 32 32 H 0.96994 * 120.00797 * 180.02562 * 14 13 11 33 33 H 1.07997 * 120.12414 * 180.25420 * 19 9 8 34 34 H 1.09000 * 112.49688 * 170.21176 * 20 2 1 35 35 H 1.09003 * 113.14616 * 327.11240 * 21 20 2 36 36 H 1.09000 * 113.15261 * 96.59823 * 21 20 2 37 37 H 1.08994 * 113.14839 * 263.40030 * 25 20 2 38 38 H 1.08995 * 113.14963 * 32.89334 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3523 1.1685 -0.0712 5 6 1.4021 2.4462 0.0865 6 6 0.1241 2.5572 -0.4660 7 6 -0.5628 3.7518 -0.3840 8 6 0.0089 4.8418 0.2442 9 6 1.2814 4.7420 0.7990 10 16 2.0056 6.1347 1.5995 11 6 2.8942 6.8359 0.2493 12 1 2.7908 6.4173 -0.7408 13 6 3.7269 7.9257 0.4581 14 7 3.8528 8.4362 1.6647 15 14 4.6696 8.6686 -0.9732 16 1 3.8495 9.7318 -1.6076 17 1 5.9414 9.2538 -0.4780 18 1 4.9673 7.6110 -1.9722 19 6 1.9800 3.5443 0.7214 20 6 2.1976 -1.2688 -0.0006 21 6 1.5700 -2.3255 -0.9124 22 16 2.1425 -3.6299 0.2110 23 8 3.5165 -3.9451 0.0324 24 8 1.1576 -4.6269 0.4460 25 6 1.8891 -2.1420 1.2179 26 1 -0.3633 -0.0791 -1.0246 27 1 -0.3633 -0.8478 0.5808 28 1 -0.3633 0.9269 0.4439 29 1 -0.3270 1.7080 -0.9575 30 1 -1.5507 3.8349 -0.8124 31 1 -0.5333 5.7738 0.3047 32 1 4.4346 9.1983 1.8108 33 1 2.9659 3.4629 1.1547 34 1 3.2655 -1.1336 -0.1717 35 1 0.4837 -2.2536 -0.9672 36 1 2.0355 -2.3731 -1.8969 37 1 2.6220 -2.0359 2.0176 38 1 0.8644 -2.0347 1.5735 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364357883.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:26 Heat of formation + Delta-G solvation = -27.467290 kcal Electronic energy + Delta-G solvation = -24253.431467 eV Core-core repulsion = 20509.565934 eV Total energy + Delta-G solvation = -3743.865533 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.059 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -40.66577 -38.37922 -37.78783 -37.20505 -36.52276 -34.15116 -32.53701 -30.79715 -30.60324 -27.58633 -27.15050 -25.59877 -24.40929 -22.48955 -21.73418 -19.88987 -19.27505 -18.18968 -17.56050 -17.13768 -17.04395 -16.63853 -16.33336 -15.63574 -15.48644 -14.95152 -14.87261 -14.85976 -14.20807 -13.91994 -13.82718 -13.43794 -13.34643 -13.08319 -12.78913 -12.72374 -12.70564 -12.35134 -12.16028 -12.08468 -11.45028 -11.37170 -11.27084 -11.13182 -11.09909 -10.87392 -10.72696 -10.02135 -9.90396 -9.19773 -9.09352 -9.01988 -8.67782 -8.07266 -6.76121 -6.31716 -4.06376 -0.39148 1.09896 1.47833 1.56630 2.56392 2.76798 3.15020 3.16549 3.20588 3.26459 3.42016 3.56693 3.77915 3.95609 4.09247 4.19480 4.32735 4.55699 4.58028 4.70208 4.96571 5.00314 5.04845 5.10511 5.16627 5.23381 5.28639 5.43317 5.45764 5.63725 5.78130 5.86194 6.08007 6.16906 6.46347 6.55006 6.83562 7.04475 7.12422 7.54988 7.99791 8.29950 9.14429 10.75062 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.021106 B = 0.002441 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.320351 B =11468.503777 C =12121.121138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.593 5.593 3 C 0.568 3.432 4 O -0.525 6.525 5 C -0.153 4.153 6 C -0.107 4.107 7 C -0.141 4.141 8 C -0.055 4.055 9 C -0.105 4.105 10 S -0.036 6.036 11 C -0.520 4.520 12 H 0.076 0.924 13 C 0.074 3.926 14 N -0.871 5.871 15 Si 0.921 3.079 16 H -0.276 1.276 17 H -0.281 1.281 18 H -0.270 1.270 19 C -0.020 4.020 20 C 0.172 3.828 21 C -0.623 4.623 22 S 2.423 3.577 23 O -0.907 6.907 24 O -0.921 6.921 25 C -0.624 4.624 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.103 0.897 29 H 0.136 0.864 30 H 0.125 0.875 31 H 0.132 0.868 32 H 0.270 0.730 33 H 0.136 0.864 34 H 0.143 0.857 35 H 0.148 0.852 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.514 -21.437 -3.612 24.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.327 5.327 3 C 0.358 3.642 4 O -0.401 6.401 5 C -0.158 4.158 6 C -0.125 4.125 7 C -0.161 4.161 8 C -0.076 4.076 9 C -0.215 4.215 10 S 0.199 5.801 11 C -0.667 4.667 12 H 0.094 0.906 13 C -0.135 4.135 14 N -0.506 5.506 15 Si 0.747 3.253 16 H -0.201 1.201 17 H -0.206 1.206 18 H -0.195 1.195 19 C -0.042 4.042 20 C 0.065 3.935 21 C -0.751 4.751 22 S 2.602 3.398 23 O -0.904 6.904 24 O -0.918 6.918 25 C -0.753 4.753 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.121 0.879 29 H 0.153 0.847 30 H 0.142 0.858 31 H 0.150 0.850 32 H 0.080 0.920 33 H 0.154 0.846 34 H 0.161 0.839 35 H 0.166 0.834 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.481 -22.027 -2.365 24.097 hybrid contribution 0.218 1.183 -2.201 2.508 sum -9.263 -20.844 -4.566 23.262 Atomic orbital electron populations 1.22565 0.79348 1.04909 1.02022 1.47375 1.06840 1.04138 1.74310 1.18626 0.87079 0.83401 0.75074 1.90797 1.13638 1.87020 1.48641 1.19712 0.95974 0.93731 1.06351 1.21740 0.93335 0.98400 0.99049 1.21103 1.00361 0.93064 1.01585 1.21993 0.94482 0.98229 0.92892 1.22848 0.96870 1.00066 1.01730 1.83603 1.59907 1.20064 1.16556 1.22831 1.31195 1.18009 0.94668 0.90584 1.25003 0.95741 0.95990 0.96815 1.69978 1.36946 1.23196 1.20463 0.86113 0.78923 0.79173 0.81096 1.20150 1.20618 1.19508 1.21890 0.98753 0.90150 0.93403 1.21164 0.99183 0.83147 0.90033 1.31496 1.12248 1.16380 1.15010 1.07852 0.75257 0.75808 0.80855 1.93753 1.30291 1.83764 1.82600 1.93665 1.60358 1.56158 1.81616 1.31533 1.12110 1.19995 1.11681 0.91735 0.91182 0.87874 0.84687 0.85753 0.85034 0.92020 0.84634 0.83927 0.83381 0.84888 0.84859 0.83445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.37 7.36 59.85 0.44 0.81 16 2 N -0.59 -6.22 3.05 -187.04 -0.57 -6.79 16 3 C 0.57 8.65 7.45 -12.32 -0.09 8.55 16 4 O -0.53 -9.92 16.20 5.32 0.09 -9.83 16 5 C -0.15 -2.43 5.47 -104.99 -0.57 -3.00 16 6 C -0.11 -1.35 7.44 -39.12 -0.29 -1.64 16 7 C -0.14 -1.87 10.02 -39.67 -0.40 -2.27 16 8 C -0.05 -0.94 9.79 -39.25 -0.38 -1.32 16 9 C -0.10 -2.15 5.45 -39.00 -0.21 -2.36 16 10 S -0.04 -0.90 21.41 -107.50 -2.30 -3.20 16 11 C -0.52 -14.53 9.46 30.91 0.29 -14.24 16 12 H 0.08 2.12 7.79 -52.49 -0.41 1.71 16 13 C 0.07 2.05 5.49 -17.46 -0.10 1.95 16 14 N -0.87 -25.26 13.22 55.49 0.73 -24.53 16 15 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 19 C -0.02 -0.40 9.35 -38.92 -0.36 -0.76 16 20 C 0.17 1.45 3.88 -67.89 -0.26 1.18 16 21 C -0.62 -3.07 7.43 37.18 0.28 -2.79 16 22 S 2.42 13.46 7.55 -107.50 -0.81 12.65 16 23 O -0.91 -8.44 18.18 -57.31 -1.04 -9.48 16 24 O -0.92 -7.73 18.18 -57.31 -1.04 -8.78 16 25 C -0.62 -3.52 7.55 37.18 0.28 -3.24 16 26 H 0.06 0.33 7.40 -51.93 -0.38 -0.06 16 27 H 0.07 0.30 6.46 -51.93 -0.34 -0.04 16 28 H 0.10 0.78 4.74 -51.93 -0.25 0.54 16 29 H 0.14 1.19 4.75 -52.49 -0.25 0.94 16 30 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.13 2.15 8.06 -52.49 -0.42 1.72 16 32 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.14 2.84 7.95 -52.49 -0.42 2.43 16 34 H 0.14 1.40 7.17 -51.93 -0.37 1.02 16 35 H 0.15 0.47 6.89 -51.93 -0.36 0.11 16 36 H 0.13 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.13 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.15 0.60 6.72 -51.93 -0.35 0.25 16 LS Contribution 345.40 15.07 5.21 5.21 Total: -1.00 -38.30 345.40 -10.10 -48.40 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -3.95 Total: -0.88 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -1.38 Total: -19.12 kcal Atomic # 7 Polarization: -31.48 SS G_CDS: 0.16 Total: -31.32 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -2.00 Total: -28.09 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 12.56 SS G_CDS: -3.11 Total: 9.45 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -38.30 -10.10 -48.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364357883.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.928 kcal (2) G-P(sol) polarization free energy of solvation -38.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds