Wall clock time and date at job start Tue Mar 31 2020 23:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34778 * 120.00046 * 2 1 4 4 O 1.21553 * 120.00384 * 183.87724 * 3 2 1 5 5 C 1.47860 * 119.99854 * 3.87177 * 3 2 1 6 6 C 1.39673 * 120.10270 * 328.59401 * 5 3 2 7 7 C 1.38040 * 120.03637 * 179.97438 * 6 5 3 8 8 C 1.38183 * 120.24957 * 359.97438 * 7 6 5 9 9 C 1.39177 * 120.19542 * 359.97438 * 8 7 6 10 10 S 1.76204 * 120.01685 * 180.02562 * 9 8 7 11 11 C 1.76201 * 100.00123 * 267.29886 * 10 9 8 12 12 H 1.07994 * 119.99911 * 5.37672 * 11 10 9 13 13 C 1.38730 * 120.00001 * 185.38559 * 11 10 9 14 14 N 1.31624 * 120.00111 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 120.00079 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47275 * 89.99539 * 15 13 11 17 17 H 1.48504 * 109.47273 * 209.99715 * 15 13 11 18 18 H 1.48495 * 109.47273 * 329.99759 * 15 13 11 19 19 C 1.38873 * 119.96527 * 0.02658 * 9 8 7 20 20 C 1.46506 * 120.00217 * 180.02562 * 2 1 3 21 21 C 1.53037 * 113.15062 * 40.36832 * 20 2 1 22 22 S 1.81428 * 89.89015 * 211.85745 * 21 20 2 23 23 O 1.42097 * 112.75340 * 280.47925 * 22 21 20 24 24 O 1.42099 * 112.83650 * 136.71572 * 22 21 20 25 25 C 1.53045 * 113.14350 * 299.99324 * 20 2 1 26 26 H 1.08994 * 109.47097 * 94.41304 * 1 2 3 27 27 H 1.09004 * 109.46876 * 214.41409 * 1 2 3 28 28 H 1.09002 * 109.46832 * 334.41220 * 1 2 3 29 29 H 1.07991 * 119.98132 * 359.97438 * 6 5 3 30 30 H 1.08001 * 119.87695 * 179.97438 * 7 6 5 31 31 H 1.07997 * 119.90104 * 179.97438 * 8 7 6 32 32 H 0.96994 * 120.00797 * 180.02562 * 14 13 11 33 33 H 1.07997 * 120.12414 * 180.25420 * 19 9 8 34 34 H 1.09000 * 112.49688 * 170.21176 * 20 2 1 35 35 H 1.09003 * 113.14616 * 327.11240 * 21 20 2 36 36 H 1.09000 * 113.15261 * 96.59823 * 21 20 2 37 37 H 1.08994 * 113.14839 * 263.40030 * 25 20 2 38 38 H 1.08995 * 113.14963 * 32.89334 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3523 1.1685 -0.0712 5 6 1.4021 2.4462 0.0865 6 6 0.1241 2.5572 -0.4660 7 6 -0.5628 3.7518 -0.3840 8 6 0.0089 4.8418 0.2442 9 6 1.2814 4.7420 0.7990 10 16 2.0056 6.1347 1.5995 11 6 2.8942 6.8359 0.2493 12 1 2.7908 6.4173 -0.7408 13 6 3.7269 7.9257 0.4581 14 7 3.8528 8.4362 1.6647 15 14 4.6696 8.6686 -0.9732 16 1 3.8495 9.7318 -1.6076 17 1 5.9414 9.2538 -0.4780 18 1 4.9673 7.6110 -1.9722 19 6 1.9800 3.5443 0.7214 20 6 2.1976 -1.2688 -0.0006 21 6 1.5700 -2.3255 -0.9124 22 16 2.1425 -3.6299 0.2110 23 8 3.5165 -3.9451 0.0324 24 8 1.1576 -4.6269 0.4460 25 6 1.8891 -2.1420 1.2179 26 1 -0.3633 -0.0791 -1.0246 27 1 -0.3633 -0.8478 0.5808 28 1 -0.3633 0.9269 0.4439 29 1 -0.3270 1.7080 -0.9575 30 1 -1.5507 3.8349 -0.8124 31 1 -0.5333 5.7738 0.3047 32 1 4.4346 9.1983 1.8108 33 1 2.9659 3.4629 1.1547 34 1 3.2655 -1.1336 -0.1717 35 1 0.4837 -2.2536 -0.9672 36 1 2.0355 -2.3731 -1.8969 37 1 2.6220 -2.0359 2.0176 38 1 0.8644 -2.0347 1.5735 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364357883.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:25 Heat of formation + Delta-G solvation = -57.094546 kcal Electronic energy + Delta-G solvation = -24254.716202 eV Core-core repulsion = 20509.565934 eV Total energy + Delta-G solvation = -3745.150268 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.059 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.69145 -39.46601 -38.45723 -38.13725 -37.13784 -34.98682 -34.67039 -32.05365 -31.80480 -28.27238 -27.75288 -27.60582 -25.47290 -23.76512 -22.68854 -20.84148 -19.94875 -19.74438 -18.65569 -18.23643 -17.62329 -17.47722 -17.10821 -16.94883 -16.58898 -16.47136 -16.18907 -15.76623 -15.16326 -15.10887 -14.76230 -14.58124 -14.26690 -14.22625 -13.86920 -13.56540 -13.37480 -13.33218 -13.26130 -12.98187 -12.81974 -12.71856 -12.69291 -12.52133 -12.19481 -12.05573 -11.75459 -11.35619 -11.27893 -11.13055 -10.65585 -10.06564 -9.79307 -9.65818 -8.82218 -8.41114 -6.21080 -0.89624 -0.15094 0.23208 1.01410 1.27791 1.35793 1.43505 1.53577 1.73816 1.79921 2.22307 2.66393 2.69854 2.91894 3.09075 3.23273 3.36782 3.40557 3.57574 3.90675 3.94072 3.98458 4.19647 4.28016 4.37215 4.45842 4.52512 4.60253 4.67400 4.77315 4.83734 4.90056 4.99634 5.18758 5.29101 5.35011 5.36700 5.50337 5.86187 6.12620 6.13992 6.92803 6.99502 8.65849 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.021106 B = 0.002441 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.320351 B =11468.503777 C =12121.121138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.579 5.579 3 C 0.561 3.439 4 O -0.580 6.580 5 C -0.154 4.154 6 C -0.077 4.077 7 C -0.120 4.120 8 C -0.064 4.064 9 C -0.128 4.128 10 S -0.096 6.096 11 C -0.536 4.536 12 H 0.065 0.935 13 C 0.020 3.980 14 N -0.906 5.906 15 Si 0.991 3.009 16 H -0.261 1.261 17 H -0.272 1.272 18 H -0.270 1.270 19 C -0.048 4.048 20 C 0.146 3.854 21 C -0.599 4.599 22 S 2.459 3.541 23 O -0.949 6.949 24 O -0.943 6.943 25 C -0.618 4.618 26 H 0.099 0.901 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.190 0.810 30 H 0.178 0.822 31 H 0.133 0.867 32 H 0.274 0.726 33 H 0.098 0.902 34 H 0.118 0.882 35 H 0.181 0.819 36 H 0.146 0.854 37 H 0.132 0.868 38 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.937 -23.641 -6.065 28.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.310 5.310 3 C 0.351 3.649 4 O -0.460 6.460 5 C -0.159 4.159 6 C -0.095 4.095 7 C -0.139 4.139 8 C -0.085 4.085 9 C -0.239 4.239 10 S 0.139 5.861 11 C -0.683 4.683 12 H 0.084 0.916 13 C -0.185 4.185 14 N -0.542 5.542 15 Si 0.813 3.187 16 H -0.186 1.186 17 H -0.197 1.197 18 H -0.195 1.195 19 C -0.070 4.070 20 C 0.039 3.961 21 C -0.729 4.729 22 S 2.641 3.359 23 O -0.946 6.946 24 O -0.940 6.940 25 C -0.747 4.747 26 H 0.118 0.882 27 H 0.124 0.876 28 H 0.116 0.884 29 H 0.207 0.793 30 H 0.195 0.805 31 H 0.151 0.849 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.136 0.864 35 H 0.198 0.802 36 H 0.165 0.835 37 H 0.150 0.850 38 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -12.953 -24.292 -4.798 27.944 hybrid contribution 1.123 1.676 -1.433 2.475 sum -11.829 -22.616 -6.232 26.273 Atomic orbital electron populations 1.23012 0.76548 1.06385 1.04896 1.47382 1.08504 1.03138 1.72018 1.18610 0.86475 0.84593 0.75232 1.90772 1.15894 1.87831 1.51532 1.19835 0.97393 0.93004 1.05706 1.22364 0.91140 0.99764 0.96246 1.21608 1.01988 0.91268 0.99073 1.22091 0.93013 1.00151 0.93250 1.22465 0.98691 0.97999 1.04761 1.83450 1.60746 1.23485 1.18413 1.23051 1.31856 1.18551 0.94856 0.91630 1.25988 0.96560 0.96299 0.99667 1.70097 1.37778 1.23813 1.22531 0.85064 0.77765 0.78395 0.77520 1.18552 1.19685 1.19505 1.21559 0.97893 0.91728 0.95771 1.21360 0.98495 0.83209 0.93063 1.31398 1.14036 1.12772 1.14704 1.06656 0.73606 0.75205 0.80436 1.93698 1.32896 1.84620 1.83402 1.93634 1.60694 1.57433 1.82256 1.31569 1.13651 1.18541 1.10925 0.88239 0.87625 0.88378 0.79297 0.80481 0.84861 0.91671 0.88367 0.86387 0.80182 0.83547 0.84962 0.80902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 7.36 127.77 0.94 1.18 16 2 N -0.58 -10.35 3.05 -863.96 -2.64 -12.98 16 3 C 0.56 16.77 7.45 86.79 0.65 17.42 16 4 O -0.58 -23.04 16.20 -3.88 -0.06 -23.10 16 5 C -0.15 -4.77 5.47 -20.11 -0.11 -4.88 16 6 C -0.08 -1.60 7.44 22.57 0.17 -1.43 16 7 C -0.12 -2.64 10.02 22.21 0.22 -2.42 16 8 C -0.06 -2.13 9.79 22.48 0.22 -1.91 16 9 C -0.13 -5.51 5.45 22.65 0.12 -5.39 16 10 S -0.10 -5.18 21.41 -56.49 -1.21 -6.39 16 11 C -0.54 -31.56 9.46 67.94 0.64 -30.91 16 12 H 0.07 3.84 7.79 -2.91 -0.02 3.82 16 13 C 0.02 1.16 5.49 84.84 0.47 1.63 16 14 N -0.91 -54.70 13.22 21.64 0.29 -54.41 16 15 Si 0.99 44.93 29.55 68.60 2.03 46.95 16 16 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 19 C -0.05 -1.97 9.35 22.70 0.21 -1.75 16 20 C 0.15 2.12 3.88 45.02 0.17 2.30 16 21 C -0.60 -3.46 7.43 71.99 0.54 -2.93 16 22 S 2.46 22.08 7.55 -56.49 -0.43 21.66 16 23 O -0.95 -17.22 18.18 -127.87 -2.32 -19.55 16 24 O -0.94 -13.34 18.18 -127.87 -2.32 -15.67 16 25 C -0.62 -5.38 7.55 72.00 0.54 -4.83 16 26 H 0.10 0.18 7.40 -2.39 -0.02 0.16 16 27 H 0.11 0.15 6.46 -2.38 -0.02 0.13 16 28 H 0.10 0.90 4.74 -2.39 -0.01 0.88 16 29 H 0.19 1.92 4.75 -2.92 -0.01 1.90 16 30 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 31 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 32 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 33 H 0.10 4.64 7.95 -2.91 -0.02 4.62 16 34 H 0.12 2.35 7.17 -2.39 -0.02 2.33 16 35 H 0.18 -0.06 6.89 -2.39 -0.02 -0.08 16 36 H 0.15 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.17 0.61 6.72 -2.39 -0.02 0.59 16 Total: -1.00 -92.47 345.40 -0.77 -93.25 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: 1.11 Total: 4.18 kcal Atomic # 6 Polarization: -38.72 SS G_CDS: 4.79 Total: -33.93 kcal Atomic # 7 Polarization: -65.04 SS G_CDS: -2.35 Total: -67.39 kcal Atomic # 8 Polarization: -53.61 SS G_CDS: -4.71 Total: -58.32 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 16 Polarization: 16.91 SS G_CDS: -1.64 Total: 15.27 kcal Total: -92.47 -0.77 -93.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364357883.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.152 kcal (2) G-P(sol) polarization free energy of solvation -92.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds