Wall clock time and date at job start Tue Mar 31 2020 23:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29407 * 1 3 3 Si 1.86808 * 119.99843 * 2 1 4 4 H 1.48499 * 109.46863 * 240.00442 * 3 2 1 5 5 H 1.48498 * 109.46761 * 0.02562 * 3 2 1 6 6 H 1.48491 * 109.46990 * 120.00455 * 3 2 1 7 7 C 1.46619 * 120.00382 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00101 * 179.97438 * 7 2 1 9 9 S 1.71202 * 120.00013 * 359.97438 * 7 2 1 10 10 C 1.76193 * 100.00117 * 185.11115 * 9 7 2 11 11 C 1.39199 * 120.03114 * 85.40782 * 10 9 7 12 12 C 1.38094 * 120.14401 * 179.97438 * 11 10 9 13 13 C 1.38149 * 120.21796 * 359.97438 * 12 11 10 14 14 C 1.39377 * 120.06375 * 359.97438 * 13 12 11 15 15 C 1.48470 * 120.07182 * 179.97438 * 14 13 12 16 16 O 1.22269 * 120.00157 * 180.02562 * 15 14 13 17 17 N 1.31327 * 119.99816 * 0.02562 * 15 14 13 18 18 S 1.49360 * 119.99828 * 179.97438 * 17 15 14 19 19 O 1.42102 * 107.63428 * 57.55416 * 18 17 15 20 20 C 1.82316 * 107.95837 * 294.15353 * 18 17 15 21 21 C 1.53822 * 107.52207 * 291.92552 * 20 18 17 22 22 O 1.42529 * 109.56927 * 302.08821 * 21 20 18 23 23 C 1.42533 * 116.07003 * 75.06567 * 22 21 20 24 24 C 1.53631 * 109.53275 * 284.94078 * 23 22 21 25 25 C 1.38891 * 120.03410 * 265.65187 * 10 9 7 26 26 H 0.97000 * 120.00370 * 359.97438 * 1 2 3 27 27 H 1.07995 * 119.92822 * 0.02562 * 11 10 9 28 28 H 1.08009 * 119.88819 * 179.97438 * 12 11 10 29 29 H 1.08006 * 119.96567 * 180.02562 * 13 12 11 30 30 H 1.09008 * 109.83082 * 51.50647 * 20 18 17 31 31 H 1.08993 * 109.83455 * 172.45805 * 20 18 17 32 32 H 1.08998 * 109.43918 * 182.06144 * 21 20 18 33 33 H 1.09000 * 109.43220 * 62.11346 * 21 20 18 34 34 H 1.08997 * 109.45909 * 164.92075 * 23 22 21 35 35 H 1.08998 * 109.44938 * 44.94721 * 23 22 21 36 36 H 1.09004 * 109.82839 * 298.41662 * 24 23 22 37 37 H 1.09001 * 109.88303 * 177.50392 * 24 23 22 38 38 H 1.08000 * 120.10864 * 0.02562 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2941 0.0000 0.0000 3 14 2.2281 1.6178 0.0000 4 1 3.0817 1.6965 -1.2126 5 1 1.2630 2.7464 0.0006 6 1 3.0818 1.6964 1.2124 7 6 2.0272 -1.2697 -0.0006 8 1 3.1072 -1.2697 -0.0010 9 16 1.1713 -2.7524 -0.0006 10 6 2.5152 -3.8815 0.1532 11 6 3.0163 -4.2007 1.4121 12 6 4.0691 -5.0858 1.5354 13 6 4.6305 -5.6595 0.4110 14 6 4.1350 -5.3470 -0.8537 15 6 4.7386 -5.9630 -2.0623 16 8 4.3032 -5.6876 -3.1711 17 7 5.7400 -6.8038 -1.9402 18 16 6.3468 -7.4239 -3.1560 19 8 6.7909 -6.3708 -4.0004 20 6 5.0940 -8.5060 -3.9199 21 6 4.8621 -9.6908 -2.9666 22 8 6.0942 -10.3714 -2.7424 23 6 7.0193 -9.7223 -1.8738 24 6 7.6768 -8.5454 -2.6106 25 6 3.0789 -4.4500 -0.9817 26 1 -0.4851 0.8400 0.0004 27 1 2.5802 -3.7559 2.2943 28 1 4.4550 -5.3302 2.5141 29 1 5.4535 -6.3515 0.5121 30 1 4.1643 -7.9542 -4.0595 31 1 5.4566 -8.8704 -4.8809 32 1 4.1429 -10.3787 -3.4111 33 1 4.4731 -9.3218 -2.0175 34 1 7.7869 -10.4320 -1.5652 35 1 6.4927 -9.3515 -0.9944 36 1 8.2287 -8.9127 -3.4758 37 1 8.3527 -8.0178 -1.9377 38 1 2.6952 -4.2009 -1.9600 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433572495.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:10 Heat of formation + Delta-G solvation = -68.334138 kcal Electronic energy + Delta-G solvation = -24539.416222 eV Core-core repulsion = 20793.778569 eV Total energy + Delta-G solvation = -3745.637653 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.059 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.17016 -39.86467 -39.24144 -37.59358 -34.75444 -34.67883 -33.29715 -32.18989 -31.85722 -31.72498 -27.45361 -25.71241 -25.42726 -23.81871 -23.61591 -22.14094 -20.24907 -19.36670 -18.54223 -18.17022 -17.70992 -17.64699 -17.14557 -16.94520 -16.65759 -16.48045 -16.10164 -15.71746 -15.66593 -15.25521 -14.89566 -14.68378 -14.52479 -14.34066 -13.93165 -13.80665 -13.50741 -13.34406 -13.05293 -12.99099 -12.98990 -12.64401 -12.39469 -12.01923 -11.79694 -11.77645 -11.31224 -11.26415 -11.21257 -11.08645 -10.82545 -10.63243 -9.90939 -9.63027 -8.95775 -8.50287 -5.96891 -1.78172 -0.13477 0.32736 1.09711 1.28301 1.34386 1.39690 1.56387 1.77912 1.87429 2.26090 2.47691 2.70347 2.80918 2.95682 3.09498 3.53443 3.57254 3.60093 3.68052 3.85447 4.03542 4.06541 4.23642 4.24659 4.46458 4.51732 4.55172 4.62078 4.68011 4.76551 4.80560 4.97501 5.17811 5.28569 5.42987 5.46571 5.56924 5.90767 5.97127 6.08625 6.79038 6.82718 8.54588 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.021182 B = 0.002728 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.589703 B =10263.324194 C =10610.619953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.037 3.963 3 Si 0.989 3.011 4 H -0.273 1.273 5 H -0.262 1.262 6 H -0.261 1.261 7 C -0.624 4.624 8 H 0.055 0.945 9 S -0.057 6.057 10 C -0.136 4.136 11 C -0.063 4.063 12 C -0.131 4.131 13 C -0.038 4.038 14 C -0.140 4.140 15 C 0.585 3.415 16 O -0.624 6.624 17 N -1.102 6.102 18 S 2.227 3.773 19 O -0.991 6.991 20 C -0.592 4.592 21 C 0.072 3.928 22 O -0.377 6.377 23 C 0.050 3.950 24 C -0.462 4.462 25 C -0.054 4.054 26 H 0.285 0.715 27 H 0.131 0.869 28 H 0.174 0.826 29 H 0.176 0.824 30 H 0.129 0.871 31 H 0.164 0.836 32 H 0.141 0.859 33 H 0.082 0.918 34 H 0.173 0.827 35 H 0.100 0.900 36 H 0.190 0.810 37 H 0.194 0.806 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.067 -27.965 -0.497 33.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.177 4.177 3 Si 0.810 3.190 4 H -0.199 1.199 5 H -0.186 1.186 6 H -0.185 1.185 7 C -0.771 4.771 8 H 0.074 0.926 9 S 0.178 5.822 10 C -0.247 4.247 11 C -0.084 4.084 12 C -0.150 4.150 13 C -0.056 4.056 14 C -0.147 4.147 15 C 0.374 3.626 16 O -0.509 6.509 17 N -1.006 6.006 18 S 2.431 3.569 19 O -0.977 6.977 20 C -0.729 4.729 21 C -0.007 4.007 22 O -0.295 6.295 23 C -0.028 4.028 24 C -0.602 4.602 25 C -0.076 4.076 26 H 0.096 0.904 27 H 0.149 0.851 28 H 0.192 0.808 29 H 0.194 0.806 30 H 0.148 0.852 31 H 0.182 0.818 32 H 0.159 0.841 33 H 0.101 0.899 34 H 0.190 0.810 35 H 0.118 0.882 36 H 0.208 0.792 37 H 0.211 0.789 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 17.967 -27.369 -1.219 32.762 hybrid contribution 0.669 2.085 -0.917 2.374 sum 18.636 -25.284 -2.137 31.482 Atomic orbital electron populations 1.68988 1.09061 1.30258 1.41701 1.27375 0.95324 1.02493 0.92521 0.85186 0.78522 0.75941 0.79377 1.19860 1.18557 1.18528 1.23650 0.94378 0.92656 1.66374 0.92627 1.81935 1.07692 0.96946 1.95632 1.22538 1.03535 1.02773 0.95885 1.22052 0.95255 0.95187 0.95944 1.21627 0.95874 0.96951 1.00594 1.21748 0.97796 0.96739 0.89358 1.19734 0.98780 1.01447 0.94786 1.17761 0.79148 0.77785 0.87909 1.91016 1.66284 1.65070 1.28556 1.69790 1.39317 1.43694 1.47776 1.15198 0.84912 0.81923 0.74876 1.93517 1.82578 1.50486 1.71108 1.30648 1.16719 1.12052 1.13437 1.22724 0.87841 0.92403 0.97698 1.87809 1.27124 1.46896 1.67624 1.23253 0.94282 0.93637 0.91594 1.29937 1.08277 1.07036 1.14997 1.21641 0.94127 0.94112 0.97710 0.90407 0.85095 0.80848 0.80639 0.85247 0.81783 0.84150 0.89946 0.80972 0.88211 0.79224 0.78883 0.88121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -52.82 13.25 23.22 0.31 -52.52 16 2 C 0.04 2.19 5.68 87.24 0.50 2.68 16 3 Si 0.99 46.13 29.64 68.60 2.03 48.17 16 4 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.62 -39.30 9.57 70.01 0.67 -38.63 16 8 H 0.06 3.56 7.85 -2.91 -0.02 3.54 16 9 S -0.06 -3.34 21.32 -56.49 -1.20 -4.54 16 10 C -0.14 -6.70 5.38 22.66 0.12 -6.58 16 11 C -0.06 -2.52 9.79 22.47 0.22 -2.30 16 12 C -0.13 -3.87 10.02 22.21 0.22 -3.64 16 13 C -0.04 -1.14 9.58 22.52 0.22 -0.92 16 14 C -0.14 -5.54 5.87 -20.05 -0.12 -5.66 16 15 C 0.59 22.30 7.34 87.50 0.64 22.94 16 16 O -0.62 -28.67 14.46 9.71 0.14 -28.53 16 17 N -1.10 -28.26 9.31 -180.47 -1.68 -29.94 16 18 S 2.23 41.75 3.84 -56.49 -0.22 41.53 16 19 O -0.99 -32.94 17.30 -133.07 -2.30 -35.24 16 20 C -0.59 -8.31 6.56 72.26 0.47 -7.83 16 21 C 0.07 0.57 6.71 72.26 0.48 1.05 16 22 O -0.38 -1.73 10.41 -148.98 -1.55 -3.28 16 23 C 0.05 -0.03 6.71 72.19 0.48 0.45 16 24 C -0.46 -0.54 6.85 72.19 0.49 -0.04 16 25 C -0.05 -2.59 9.34 22.65 0.21 -2.38 16 26 H 0.28 15.73 8.26 -92.71 -0.77 14.96 16 27 H 0.13 5.04 8.06 -2.91 -0.02 5.02 16 28 H 0.17 3.36 8.06 -2.91 -0.02 3.34 16 29 H 0.18 3.65 7.55 -2.91 -0.02 3.63 16 30 H 0.13 2.69 7.16 -2.38 -0.02 2.68 16 31 H 0.16 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 0.68 7.92 -2.39 -0.02 0.66 16 34 H 0.17 -1.29 8.14 -2.39 -0.02 -1.31 16 35 H 0.10 -0.10 7.92 -2.39 -0.02 -0.12 16 36 H 0.19 -0.95 8.14 -2.39 -0.02 -0.97 16 37 H 0.19 -0.65 8.14 -2.39 -0.02 -0.67 16 38 H 0.10 5.37 7.65 -2.91 -0.02 5.35 16 Total: -1.00 -101.83 351.39 1.23 -100.59 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: 1.09 Total: 4.60 kcal Atomic # 6 Polarization: -45.47 SS G_CDS: 4.62 Total: -40.85 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -1.37 Total: -82.46 kcal Atomic # 8 Polarization: -63.34 SS G_CDS: -3.71 Total: -67.05 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.17 kcal Atomic # 16 Polarization: 38.41 SS G_CDS: -1.42 Total: 36.99 kcal Total: -101.83 1.23 -100.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433572495.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.260 kcal (2) G-P(sol) polarization free energy of solvation -101.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds