Wall clock time and date at job start Tue Mar 31 2020 23:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86796 * 120.00077 * 2 1 4 4 H 1.48504 * 109.47114 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47223 * 120.00098 * 3 2 1 6 6 H 1.48500 * 109.47278 * 240.00285 * 3 2 1 7 7 C 1.38801 * 119.99821 * 180.27886 * 2 1 3 8 8 H 1.07998 * 119.99801 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00051 * 359.97438 * 7 2 1 10 10 C 1.81006 * 100.00043 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47128 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00439 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99837 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00035 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47285 * 174.88541 * 14 13 11 16 16 H 1.09000 * 109.18256 * 54.14477 * 15 14 13 17 17 C 1.54249 * 109.19709 * 294.81520 * 15 14 13 18 18 S 1.83522 * 100.55528 * 212.21119 * 17 15 14 19 19 O 1.42107 * 111.53757 * 134.01854 * 18 17 15 20 20 O 1.42102 * 111.54012 * 274.34054 * 18 17 15 21 21 C 1.77612 * 97.19376 * 24.17953 * 18 17 15 22 22 C 1.37962 * 130.67071 * 164.97193 * 21 18 17 23 23 C 1.38203 * 120.23038 * 180.36237 * 22 21 18 24 24 C 1.38257 * 119.13282 * 0.02758 * 23 22 21 25 25 C 1.37597 * 120.44569 * 359.82789 * 24 23 22 26 26 C 1.38268 * 107.82542 * 345.02602 * 21 18 17 27 27 H 0.97000 * 119.99966 * 359.71850 * 1 2 3 28 28 H 1.08999 * 109.46909 * 300.00521 * 10 9 7 29 29 H 1.09002 * 109.46724 * 60.00263 * 10 9 7 30 30 H 0.97000 * 120.00008 * 359.97438 * 13 11 10 31 31 H 1.09003 * 109.46691 * 294.88440 * 14 13 11 32 32 H 1.08992 * 109.47476 * 54.88224 * 14 13 11 33 33 H 1.08996 * 111.20172 * 330.04032 * 17 15 14 34 34 H 1.09002 * 111.19700 * 94.34200 * 17 15 14 35 35 H 1.08005 * 119.88550 * 0.38047 * 22 21 18 36 36 H 1.08001 * 120.43633 * 180.02562 * 23 22 21 37 37 H 1.07997 * 119.77645 * 179.85432 * 24 23 22 38 38 H 1.07996 * 119.47143 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1041 1.6964 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0059 8 1 3.0902 -1.2021 -0.0063 9 16 1.1292 -2.7279 -0.0126 10 6 2.5158 -3.8914 -0.0193 11 6 1.9873 -5.3026 -0.0252 12 8 0.7911 -5.5023 -0.0253 13 7 2.8441 -6.3431 -0.0303 14 6 2.3304 -7.7150 -0.0365 15 6 3.4970 -8.6959 -0.1700 16 1 4.2268 -8.4932 0.6138 17 6 4.1651 -8.5049 -1.5471 18 16 4.7192 -10.2200 -1.8927 19 8 4.4005 -10.6136 -3.2204 20 8 5.9881 -10.4856 -1.3107 21 6 3.5387 -11.0483 -0.8558 22 6 3.1602 -12.3740 -0.8056 23 6 2.1991 -12.7895 0.0964 24 6 1.6246 -11.8602 0.9437 25 6 2.0072 -10.5395 0.8922 26 6 2.9809 -10.1052 -0.0124 27 1 -0.4850 0.8400 0.0041 28 1 3.1237 -3.7270 -0.9089 29 1 3.1250 -3.7357 0.8710 30 1 3.8009 -6.1834 -0.0305 31 1 1.7983 -7.9079 0.8951 32 1 1.6491 -7.8441 -0.8774 33 1 3.4445 -8.1659 -2.2912 34 1 5.0121 -7.8218 -1.4828 35 1 3.6168 -13.0897 -1.4732 36 1 1.9005 -13.8266 0.1388 37 1 0.8708 -12.1731 1.6509 38 1 1.5484 -9.8269 1.5617 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001436421500.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:29 Heat of formation + Delta-G solvation = -104.183912 kcal Electronic energy + Delta-G solvation = -23870.410307 eV Core-core repulsion = 20123.218091 eV Total energy + Delta-G solvation = -3747.192216 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.059 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.08589 -40.29621 -38.25046 -37.42751 -37.01064 -34.65251 -34.55238 -32.17227 -31.30763 -30.46600 -27.95060 -27.47890 -24.40767 -24.02945 -22.01074 -21.73076 -20.17537 -19.82178 -18.51897 -17.90790 -17.68715 -17.34753 -16.89171 -16.85899 -16.73009 -16.56476 -16.09566 -15.84777 -15.42747 -15.11084 -14.73087 -14.57819 -14.28486 -14.13355 -14.03381 -13.66103 -13.40664 -13.29871 -13.18846 -13.15225 -13.03065 -12.84871 -12.64381 -12.57847 -12.34806 -11.81967 -11.72748 -11.34412 -11.11397 -10.97074 -10.36744 -10.25055 -10.13632 -9.87569 -8.64315 -8.33211 -6.10650 -0.98992 -0.19020 0.20424 1.28678 1.44879 1.48432 1.57462 1.61472 1.64030 2.22514 2.29906 2.43522 2.54304 2.93975 3.01132 3.20971 3.28629 3.38594 3.65720 3.81775 4.02152 4.03612 4.07242 4.26757 4.29200 4.36018 4.41476 4.56291 4.56991 4.63913 4.73169 4.85421 4.87367 5.03550 5.24579 5.36285 5.39790 5.43569 5.82785 6.21160 6.51289 7.08495 7.26085 8.75563 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.022454 B = 0.002199 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.684797 B =12729.247290 C =13598.257966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.997 3.003 4 H -0.281 1.281 5 H -0.262 1.262 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.131 4.131 11 C 0.536 3.464 12 O -0.564 6.564 13 N -0.711 5.711 14 C 0.134 3.866 15 C -0.061 4.061 16 H 0.149 0.851 17 C -0.554 4.554 18 S 2.478 3.522 19 O -0.971 6.971 20 O -0.960 6.960 21 C -0.644 4.644 22 C -0.025 4.025 23 C -0.135 4.135 24 C -0.073 4.073 25 C -0.126 4.126 26 C -0.040 4.040 27 H 0.270 0.730 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.420 0.580 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.162 0.838 34 H 0.190 0.810 35 H 0.141 0.859 36 H 0.161 0.839 37 H 0.158 0.842 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.905 -24.973 1.178 27.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.818 3.182 4 H -0.206 1.206 5 H -0.186 1.186 6 H -0.187 1.187 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.282 4.282 11 C 0.321 3.679 12 O -0.442 6.442 13 N -0.366 5.366 14 C 0.009 3.991 15 C -0.081 4.081 16 H 0.167 0.833 17 C -0.686 4.686 18 S 2.663 3.337 19 O -0.968 6.968 20 O -0.957 6.957 21 C -0.731 4.731 22 C -0.044 4.044 23 C -0.153 4.153 24 C -0.090 4.090 25 C -0.145 4.145 26 C -0.042 4.042 27 H 0.079 0.921 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.258 0.742 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.180 0.820 34 H 0.208 0.792 35 H 0.158 0.842 36 H 0.179 0.821 37 H 0.176 0.824 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 9.513 -25.640 0.589 27.354 hybrid contribution 1.059 1.426 0.520 1.851 sum 10.572 -24.214 1.109 26.445 Atomic orbital electron populations 1.70174 1.07962 1.28617 1.48066 1.26111 0.95937 1.03309 0.93844 0.85029 0.77806 0.75829 0.79501 1.20631 1.18645 1.18666 1.23174 0.95369 0.92019 1.58732 0.89789 1.85597 1.10739 0.99307 1.97064 1.23388 1.03498 0.94255 1.07088 1.20012 0.86178 0.86615 0.75051 1.90711 1.17501 1.86063 1.49951 1.45634 1.10552 1.04532 1.75845 1.21358 0.94956 0.79314 1.03456 1.20631 0.99056 0.90570 0.97798 0.83329 1.30561 1.13830 1.19656 1.04589 1.06129 0.74225 0.79755 0.73583 1.93564 1.84783 1.81622 1.36854 1.93603 1.39390 1.84185 1.78500 1.30385 1.20956 1.03718 1.18089 1.20620 0.94496 0.92935 0.96331 1.21754 0.96463 1.01660 0.95469 1.21632 0.97678 0.92485 0.97243 1.21351 0.96796 0.97389 0.98944 1.20382 0.95743 0.92858 0.95223 0.92059 0.86880 0.86976 0.74176 0.90345 0.91238 0.81972 0.79221 0.84155 0.82120 0.82404 0.83768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.08 13.22 21.65 0.29 -54.80 16 2 C 0.01 0.71 5.49 84.86 0.47 1.17 16 3 Si 1.00 42.55 29.55 68.60 2.03 44.58 16 4 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 6 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 7 C -0.55 -30.10 9.50 67.95 0.65 -29.45 16 8 H 0.08 4.26 7.80 -2.91 -0.02 4.24 16 9 S -0.15 -8.20 20.57 -56.49 -1.16 -9.37 16 10 C -0.13 -4.67 6.16 71.23 0.44 -4.24 16 11 C 0.54 17.17 7.85 87.65 0.69 17.86 16 12 O -0.56 -23.84 15.86 -3.02 -0.05 -23.89 16 13 N -0.71 -13.27 5.32 -463.07 -2.46 -15.73 16 14 C 0.13 2.13 4.75 86.38 0.41 2.55 16 15 C -0.06 -0.62 2.61 -11.05 -0.03 -0.65 16 16 H 0.15 0.77 8.14 -2.39 -0.02 0.75 16 17 C -0.55 -4.50 6.72 72.41 0.49 -4.01 16 18 S 2.48 38.80 6.15 -56.49 -0.35 38.45 16 19 O -0.97 -22.45 18.01 -127.82 -2.30 -24.75 16 20 O -0.96 -20.51 18.01 -127.82 -2.30 -22.82 16 21 C -0.64 -10.41 6.16 22.21 0.14 -10.28 16 22 C -0.02 -0.38 10.02 22.20 0.22 -0.15 16 23 C -0.13 -1.53 10.10 22.27 0.22 -1.31 16 24 C -0.07 -0.79 9.99 22.12 0.22 -0.57 16 25 C -0.13 -1.62 9.43 22.50 0.21 -1.40 16 26 C -0.04 -0.55 5.55 -19.41 -0.11 -0.66 16 27 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 28 H 0.11 3.54 8.14 -2.40 -0.02 3.52 16 29 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 30 H 0.42 4.47 8.34 -92.71 -0.77 3.70 16 31 H 0.08 1.30 6.87 -2.39 -0.02 1.28 16 32 H 0.07 1.32 8.04 -2.39 -0.02 1.30 16 33 H 0.16 1.22 7.85 -2.39 -0.02 1.20 16 34 H 0.19 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 36 H 0.16 0.90 8.06 -2.91 -0.02 0.87 16 37 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 38 H 0.14 1.46 7.01 -2.91 -0.02 1.44 16 Total: -1.00 -89.38 353.32 -1.96 -91.34 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 0.33 Total: 8.13 kcal Atomic # 6 Polarization: -35.16 SS G_CDS: 4.02 Total: -31.14 kcal Atomic # 7 Polarization: -68.35 SS G_CDS: -2.18 Total: -70.53 kcal Atomic # 8 Polarization: -66.81 SS G_CDS: -4.65 Total: -71.46 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 16 Polarization: 30.60 SS G_CDS: -1.51 Total: 29.09 kcal Total: -89.38 -1.96 -91.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436421500.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.844 kcal (2) G-P(sol) polarization free energy of solvation -89.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds