Wall clock time and date at job start Tue Mar 31 2020 23:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99882 * 2 1 4 4 H 1.48505 * 109.47280 * 89.99859 * 3 2 1 5 5 H 1.48499 * 109.46827 * 210.00054 * 3 2 1 6 6 H 1.48500 * 109.46990 * 329.99641 * 3 2 1 7 7 C 1.38816 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99750 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00001 * 180.02562 * 7 2 1 10 10 C 1.46502 * 119.99825 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47147 * 187.33876 * 10 9 7 12 12 H 1.09002 * 109.87175 * 314.94210 * 11 10 9 13 13 C 1.54328 * 109.88511 * 193.92658 * 11 10 9 14 14 C 1.55155 * 102.94264 * 218.38906 * 13 11 10 15 15 C 1.54909 * 101.58267 * 35.49840 * 14 13 11 16 16 N 1.47016 * 109.88546 * 76.11442 * 11 10 9 17 17 C 1.34774 * 125.65259 * 298.34302 * 16 11 10 18 18 O 1.21630 * 119.99716 * 1.67582 * 17 16 11 19 19 C 1.47262 * 120.00543 * 181.68190 * 17 16 11 20 20 C 1.36745 * 126.93753 * 172.10241 * 19 17 16 21 21 N 1.34730 * 108.40936 * 179.97438 * 20 19 17 22 22 H 0.97006 * 124.85278 * 179.97438 * 21 20 19 23 23 C 1.36456 * 110.29434 * 0.02562 * 21 20 19 24 24 Br 1.89101 * 125.58319 * 179.97438 * 23 21 20 25 25 C 1.34585 * 108.83827 * 359.70807 * 23 21 20 26 26 H 0.96998 * 120.00230 * 359.97438 * 1 2 3 27 27 H 0.96993 * 120.00109 * 0.02562 * 9 7 2 28 28 H 1.09005 * 109.46862 * 307.33954 * 10 9 7 29 29 H 1.09003 * 109.47154 * 67.33739 * 10 9 7 30 30 H 1.09003 * 110.71579 * 336.75027 * 13 11 10 31 31 H 1.08993 * 110.71855 * 100.02058 * 13 11 10 32 32 H 1.09001 * 111.00117 * 153.57241 * 14 13 11 33 33 H 1.09001 * 111.00150 * 277.42652 * 14 13 11 34 34 H 1.09004 * 110.36520 * 81.82872 * 15 14 13 35 35 H 1.08995 * 110.36807 * 204.14916 * 15 14 13 36 36 H 1.08005 * 125.79812 * 0.02562 * 20 19 17 37 37 H 1.08003 * 126.83833 * 180.26252 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5477 1.4402 -0.7001 6 1 1.4476 2.6526 -0.7001 7 6 2.0104 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.6061 -2.1972 0.1860 12 1 5.9144 -1.3734 -0.4579 13 6 6.4182 -3.4638 -0.1572 14 6 7.5468 -3.4521 0.9074 15 6 6.8048 -2.8798 2.1410 16 7 5.8840 -1.8680 1.5916 17 6 5.3806 -0.8154 2.2662 18 8 4.6024 -0.0579 1.7186 19 6 5.7728 -0.5824 3.6664 20 6 5.4733 0.5098 4.4328 21 7 6.0161 0.3349 5.6534 22 1 5.9492 0.9675 6.3857 23 6 6.6743 -0.8590 5.7120 24 35 7.5919 -1.5367 7.2202 25 6 6.5586 -1.4779 4.5225 26 1 -0.4850 0.8400 0.0004 27 1 3.8646 -0.3621 0.0014 28 1 3.7537 -3.0973 0.8179 29 1 3.9514 -2.9833 -0.9475 30 1 5.8013 -4.3567 -0.0554 31 1 6.8349 -3.3943 -1.1619 32 1 7.9097 -4.4611 1.1032 33 1 8.3633 -2.7968 0.6039 34 1 6.2455 -3.6673 2.6462 35 1 7.5125 -2.4156 2.8277 36 1 4.8984 1.3668 4.1140 37 1 6.9655 -2.4409 4.2513 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699754610.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:50 Heat of formation + Delta-G solvation = 60.085422 kcal Electronic energy + Delta-G solvation = -22219.622120 eV Core-core repulsion = 18852.621645 eV Total energy + Delta-G solvation = -3367.000475 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.36340 -39.55900 -36.93595 -34.39554 -32.14067 -32.03515 -31.25479 -30.61789 -29.04183 -28.35121 -25.18449 -23.86146 -22.27847 -21.31975 -20.78374 -20.19600 -18.90732 -18.12801 -17.30276 -16.36481 -15.79165 -14.98188 -14.72452 -14.31308 -14.19724 -13.78361 -13.67420 -13.61660 -13.15897 -12.83274 -12.55410 -12.38247 -12.23170 -11.88514 -11.61169 -11.38868 -11.26816 -10.94332 -10.83886 -10.65397 -10.53046 -10.28445 -9.88588 -9.47335 -9.09209 -9.04929 -8.60958 -8.48737 -8.15633 -6.83763 -5.49371 -2.79138 1.00613 1.73930 2.00325 2.97221 3.40800 3.66345 3.72028 3.80984 3.84298 4.60209 4.61405 4.87844 4.93597 4.96302 5.10761 5.15169 5.31826 5.36152 5.44539 5.57387 5.72850 5.74116 5.80490 5.86168 5.99302 6.03741 6.18649 6.30905 6.36888 6.41558 6.56612 6.81879 6.99480 7.03706 7.95939 8.27819 8.67984 8.80337 9.60302 10.32972 10.55665 11.69602 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.014322 B = 0.003909 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.502588 B = 7161.264979 C = 8608.875594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.000 4.000 3 Si 0.904 3.096 4 H -0.284 1.284 5 H -0.281 1.281 6 H -0.306 1.306 7 C -0.229 4.229 8 H 0.081 0.919 9 N -0.745 5.745 10 C 0.151 3.849 11 C 0.128 3.872 12 H 0.072 0.928 13 C -0.124 4.124 14 C -0.134 4.134 15 C 0.091 3.909 16 N -0.609 5.609 17 C 0.596 3.404 18 O -0.501 6.501 19 C -0.211 4.211 20 C 0.098 3.902 21 N -0.540 5.540 22 H 0.421 0.579 23 C -0.006 4.006 24 Br -0.001 7.001 25 C -0.127 4.127 26 H 0.254 0.746 27 H 0.378 0.622 28 H 0.027 0.973 29 H 0.025 0.975 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.188 0.812 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.086 -5.372 15.172 28.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.194 4.194 3 Si 0.736 3.264 4 H -0.210 1.210 5 H -0.208 1.208 6 H -0.234 1.234 7 C -0.359 4.359 8 H 0.099 0.901 9 N -0.396 5.396 10 C 0.022 3.978 11 C 0.024 3.976 12 H 0.091 0.909 13 C -0.162 4.162 14 C -0.172 4.172 15 C -0.033 4.033 16 N -0.344 5.344 17 C 0.385 3.615 18 O -0.375 6.375 19 C -0.221 4.221 20 C -0.040 4.040 21 N -0.137 5.137 22 H 0.258 0.742 23 C -0.193 4.193 24 Br 0.082 6.918 25 C -0.155 4.155 26 H 0.064 0.936 27 H 0.217 0.783 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.205 0.795 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 22.760 -5.115 15.605 28.066 hybrid contribution 0.229 1.514 0.218 1.547 sum 22.990 -3.601 15.823 28.140 Atomic orbital electron populations 1.69747 1.05230 1.25407 1.59179 1.24572 0.95072 0.97312 1.02431 0.86206 0.78313 0.84118 0.77738 1.21039 1.20777 1.23387 1.19035 0.81256 0.94233 1.41421 0.90101 1.43053 1.03810 1.02652 1.90049 1.20954 0.88189 0.90525 0.98134 1.21923 0.96837 0.96767 0.82028 0.90947 1.22631 0.96573 0.97747 0.99290 1.22794 0.97737 1.01422 0.95273 1.22685 0.92364 0.91476 0.96729 1.48188 1.47858 1.26148 1.12237 1.16852 0.80042 0.80375 0.84205 1.90764 1.32604 1.45664 1.68456 1.20422 1.09097 0.97334 0.95263 1.22054 0.98166 1.00512 0.83270 1.41582 1.42281 1.16674 1.13158 0.74176 1.21813 1.09271 0.92216 0.96011 1.96753 1.74097 1.84645 1.36307 1.22589 1.01639 1.00522 0.90711 0.93612 0.78269 0.95467 0.95753 0.90183 0.90141 0.90072 0.90795 0.91501 0.89830 0.79523 0.81740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -32.09 13.97 55.49 0.78 -31.31 16 2 C 0.00 0.02 5.50 -17.43 -0.10 -0.08 16 3 Si 0.90 25.76 26.66 -169.99 -4.53 21.23 16 4 H -0.28 -8.06 7.11 56.52 0.40 -7.66 16 5 H -0.28 -7.82 6.52 56.52 0.37 -7.46 16 6 H -0.31 -8.65 7.11 56.52 0.40 -8.25 16 7 C -0.23 -7.18 10.47 -15.06 -0.16 -7.34 16 8 H 0.08 2.67 8.06 -52.49 -0.42 2.25 16 9 N -0.74 -20.02 3.98 -59.91 -0.24 -20.25 16 10 C 0.15 3.20 5.61 -4.04 -0.02 3.18 16 11 C 0.13 2.11 3.06 -66.96 -0.21 1.91 16 12 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 13 C -0.12 -1.41 6.44 -24.90 -0.16 -1.57 16 14 C -0.13 -1.22 7.08 -24.58 -0.17 -1.39 16 15 C 0.09 1.00 5.31 -2.53 -0.01 0.99 16 16 N -0.61 -9.75 3.06 -164.34 -0.50 -10.25 16 17 C 0.60 11.19 7.64 -12.59 -0.10 11.09 16 18 O -0.50 -11.81 12.10 5.25 0.06 -11.75 16 19 C -0.21 -3.18 6.20 -103.35 -0.64 -3.82 16 20 C 0.10 1.27 11.70 -16.82 -0.20 1.08 16 21 N -0.54 -5.38 5.90 -11.27 -0.07 -5.44 16 22 H 0.42 2.85 8.96 -40.82 -0.37 2.48 16 23 C -0.01 -0.06 7.61 -16.79 -0.13 -0.19 16 24 Br 0.00 -0.01 34.08 -68.01 -2.32 -2.33 16 25 C -0.13 -1.52 9.21 -37.46 -0.34 -1.86 16 26 H 0.25 8.22 8.31 -40.82 -0.34 7.88 16 27 H 0.38 10.33 3.17 -40.82 -0.13 10.20 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.02 0.51 8.08 -51.93 -0.42 0.09 16 30 H 0.08 0.88 7.85 -51.93 -0.41 0.47 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.71 8.06 -51.93 -0.42 0.29 16 35 H 0.08 0.80 5.21 -51.93 -0.27 0.53 16 36 H 0.19 2.33 8.06 -52.48 -0.42 1.91 16 37 H 0.17 1.63 5.10 -52.48 -0.27 1.37 16 LS Contribution 317.86 15.07 4.79 4.79 Total: -1.00 -38.76 317.86 -8.67 -47.43 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -4.40 Total: 5.89 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -2.24 Total: 2.00 kcal Atomic # 7 Polarization: -67.23 SS G_CDS: -0.03 Total: -67.26 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.06 Total: -11.75 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -4.53 Total: 21.23 kcal Atomic # 35 Polarization: -0.01 SS G_CDS: -2.32 Total: -2.33 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -38.76 -8.67 -47.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699754610.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.513 kcal (2) G-P(sol) polarization free energy of solvation -38.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds