Wall clock time and date at job start Tue Mar 31 2020 23:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99623 * 2 1 4 4 H 1.48499 * 109.46871 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47349 * 300.00067 * 3 2 1 6 6 H 1.48505 * 109.47162 * 60.00262 * 3 2 1 7 7 C 1.38808 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99330 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00410 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99940 * 180.02562 * 9 7 2 11 11 H 1.08991 * 109.47119 * 34.99718 * 10 9 7 12 12 C 1.53000 * 109.47054 * 155.00291 * 10 9 7 13 13 N 1.46499 * 109.46840 * 304.99499 * 12 10 9 14 14 C 1.34779 * 119.99872 * 180.02562 * 13 12 10 15 15 O 1.21626 * 120.00160 * 0.02562 * 14 13 12 16 16 C 1.47263 * 119.99956 * 180.02562 * 14 13 12 17 17 C 1.36751 * 126.93445 * 180.02562 * 16 14 13 18 18 N 1.34735 * 108.40612 * 179.97438 * 17 16 14 19 19 H 0.96998 * 124.85203 * 180.02562 * 18 17 16 20 20 C 1.36458 * 110.29793 * 359.97438 * 18 17 16 21 21 Br 1.89091 * 125.58193 * 180.02562 * 20 18 17 22 22 C 1.34587 * 108.83597 * 359.74947 * 20 18 17 23 23 C 1.53006 * 109.46878 * 274.99762 * 10 9 7 24 24 C 1.52995 * 117.49555 * 128.74822 * 23 10 9 25 25 C 1.52995 * 117.49792 * 60.09061 * 23 10 9 26 26 H 0.96994 * 120.00251 * 359.97438 * 1 2 3 27 27 H 0.96996 * 119.99970 * 0.02562 * 9 7 2 28 28 H 1.09002 * 109.47398 * 64.99825 * 12 10 9 29 29 H 1.09001 * 109.47194 * 185.00006 * 12 10 9 30 30 H 0.97000 * 120.00420 * 0.02562 * 13 12 10 31 31 H 1.07992 * 125.79611 * 359.97438 * 17 16 14 32 32 H 1.08001 * 126.83921 * 180.26321 * 22 20 18 33 33 H 1.08997 * 115.54853 * 274.41548 * 23 10 9 34 34 H 1.08998 * 117.49984 * 359.97438 * 24 23 10 35 35 H 1.09006 * 117.49830 * 145.02021 * 24 23 10 36 36 H 1.09000 * 117.49832 * 214.98051 * 25 23 10 37 37 H 1.09004 * 117.49814 * 359.97438 * 25 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9689 -3.5504 0.5888 12 6 1.1811 -4.7521 0.6090 13 7 0.7345 -4.3355 1.9406 14 6 -0.0545 -5.1478 2.6716 15 8 -0.3954 -6.2269 2.2258 16 6 -0.5038 -4.7288 4.0099 17 6 -1.3005 -5.4354 4.8679 18 7 -1.4760 -4.7038 5.9856 19 1 -2.0021 -4.9802 6.7521 20 6 -0.8069 -3.5187 5.8855 21 35 -0.7594 -2.1671 7.2071 22 6 -0.1814 -3.4720 4.6948 23 6 2.4221 -4.0355 -1.4376 24 6 3.8823 -4.3890 -1.7268 25 6 3.3029 -3.0621 -2.2233 26 1 -0.4850 0.8400 0.0004 27 1 0.3557 -2.3880 -0.0005 28 1 0.3135 -4.9201 -0.0291 29 1 1.7560 -5.6746 0.6908 30 1 1.0066 -3.4751 2.2963 31 1 -1.7180 -6.4137 4.6812 32 1 0.4335 -2.6683 4.3174 33 1 1.6542 -4.5774 -1.9897 34 1 4.5838 -4.3513 -0.8934 35 1 4.0751 -5.1632 -2.4696 36 1 3.1147 -2.9637 -3.2924 37 1 3.6228 -2.1515 -1.7166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752472716.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:45 Heat of formation + Delta-G solvation = 46.292455 kcal Electronic energy + Delta-G solvation = -21210.503105 eV Core-core repulsion = 17842.904522 eV Total energy + Delta-G solvation = -3367.598583 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.23902 -38.85652 -37.40952 -34.55019 -33.32132 -31.90292 -31.53154 -30.59762 -28.38023 -27.83304 -24.13197 -22.98407 -21.71933 -21.50701 -20.62591 -19.87035 -19.15459 -18.54484 -17.22819 -15.88997 -15.48914 -15.19571 -14.92272 -14.50630 -14.22204 -14.06163 -13.79209 -13.42637 -13.23371 -13.12044 -12.77285 -12.27776 -12.00688 -11.33323 -11.15321 -11.10832 -10.86131 -10.83308 -10.68421 -10.66738 -10.07261 -9.90899 -9.70077 -9.44742 -9.26306 -9.02696 -8.95901 -8.55109 -8.32813 -7.01381 -5.78656 -3.08051 1.15322 1.74072 2.08719 3.04646 3.41139 3.47335 3.49576 3.77820 3.84438 4.44551 4.62092 4.87384 5.15932 5.27700 5.28041 5.46506 5.51396 5.55556 5.64057 5.81052 5.88539 5.96257 6.07724 6.11674 6.21668 6.42625 6.46193 6.57881 6.59115 6.65213 6.81507 6.99672 7.03754 7.07706 7.68247 8.09647 8.38031 8.72031 9.50418 10.05058 10.41320 11.43077 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.010398 B = 0.003719 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.200902 B = 7526.972489 C = 9722.160172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.009 4.009 3 Si 0.901 3.099 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.716 5.716 10 C 0.193 3.807 11 H 0.055 0.945 12 C 0.120 3.880 13 N -0.706 5.706 14 C 0.588 3.412 15 O -0.565 6.565 16 C -0.220 4.220 17 C 0.093 3.907 18 N -0.541 5.541 19 H 0.420 0.580 20 C -0.006 4.006 21 Br 0.002 6.998 22 C -0.105 4.105 23 C -0.158 4.158 24 C -0.196 4.196 25 C -0.156 4.156 26 H 0.254 0.746 27 H 0.386 0.614 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.410 0.590 31 H 0.186 0.814 32 H 0.161 0.839 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.324 -9.016 14.438 17.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.205 4.205 3 Si 0.732 3.268 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.089 0.911 9 N -0.357 5.357 10 C 0.082 3.918 11 H 0.073 0.927 12 C -0.004 4.004 13 N -0.356 5.356 14 C 0.375 3.625 15 O -0.446 6.446 16 C -0.231 4.231 17 C -0.045 4.045 18 N -0.138 5.138 19 H 0.257 0.743 20 C -0.193 4.193 21 Br 0.085 6.915 22 C -0.132 4.132 23 C -0.180 4.180 24 C -0.234 4.234 25 C -0.194 4.194 26 H 0.064 0.936 27 H 0.220 0.780 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.247 0.753 31 H 0.203 0.797 32 H 0.178 0.822 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.481 -9.101 14.739 17.386 hybrid contribution -0.070 1.075 0.039 1.078 sum -1.551 -8.026 14.778 16.888 Atomic orbital electron populations 1.69671 1.05005 1.25505 1.57318 1.24707 0.95408 0.97488 1.02939 0.86219 0.78833 0.84548 0.77179 1.20605 1.21987 1.21932 1.19193 0.90828 0.83842 1.42837 0.91114 1.42457 1.05856 0.99393 1.88029 1.20061 0.94368 0.86174 0.91198 0.92711 1.21580 0.98534 0.97450 0.82856 1.45753 1.50441 1.21751 1.17657 1.17224 0.78011 0.83765 0.83457 1.90737 1.58424 1.22857 1.72592 1.20469 1.08739 0.96985 0.96924 1.21942 0.99523 0.97574 0.85434 1.41549 1.41281 1.14082 1.16930 0.74287 1.21747 1.08632 0.90435 0.98490 1.96773 1.98344 1.45773 1.50563 1.22211 1.01160 0.98028 0.91788 1.23031 0.92119 1.03003 0.99851 1.22959 0.97342 0.99790 1.03340 1.22778 1.03458 0.94054 0.99070 0.93569 0.77999 0.91808 0.91666 0.75299 0.79717 0.82188 0.89140 0.89552 0.90127 0.90270 0.87717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.67 13.06 55.49 0.72 -25.95 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.90 21.49 29.55 -169.99 -5.02 16.46 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.24 -5.97 8.63 -15.06 -0.13 -6.10 16 8 H 0.07 1.76 6.91 -52.48 -0.36 1.39 16 9 N -0.72 -16.32 4.54 -53.42 -0.24 -16.56 16 10 C 0.19 3.57 2.70 -67.92 -0.18 3.39 16 11 H 0.05 1.03 7.84 -51.93 -0.41 0.62 16 12 C 0.12 2.08 5.22 -4.04 -0.02 2.06 16 13 N -0.71 -12.14 5.38 -61.43 -0.33 -12.47 16 14 C 0.59 10.19 7.81 -12.59 -0.10 10.10 16 15 O -0.56 -11.12 16.91 5.25 0.09 -11.04 16 16 C -0.22 -3.22 6.29 -103.35 -0.65 -3.87 16 17 C 0.09 1.06 11.69 -16.82 -0.20 0.86 16 18 N -0.54 -5.18 5.90 -11.27 -0.07 -5.24 16 19 H 0.42 2.56 8.96 -40.82 -0.37 2.20 16 20 C -0.01 -0.08 7.61 -16.78 -0.13 -0.20 16 21 Br 0.00 0.02 34.08 -68.01 -2.32 -2.29 16 22 C -0.10 -1.45 10.51 -37.45 -0.39 -1.85 16 23 C -0.16 -2.76 5.36 -90.62 -0.49 -3.24 16 24 C -0.20 -2.98 10.18 -26.70 -0.27 -3.25 16 25 C -0.16 -2.77 9.78 -26.70 -0.26 -3.03 16 26 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 27 H 0.39 9.69 7.80 -40.82 -0.32 9.37 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.41 7.15 7.26 -40.82 -0.30 6.86 16 31 H 0.19 1.68 8.06 -52.49 -0.42 1.25 16 32 H 0.16 2.25 7.69 -52.49 -0.40 1.85 16 33 H 0.09 1.55 8.11 -51.93 -0.42 1.12 16 34 H 0.09 1.26 8.05 -51.93 -0.42 0.85 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.10 2.08 6.23 -51.93 -0.32 1.75 16 LS Contribution 339.81 15.07 5.12 5.12 Total: -1.00 -30.34 339.81 -9.53 -39.87 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -4.57 Total: 17.57 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -2.91 Total: -5.47 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: 0.08 Total: -60.22 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 35 Polarization: 0.02 SS G_CDS: -2.32 Total: -2.29 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.34 -9.53 -39.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752472716.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.161 kcal (2) G-P(sol) polarization free energy of solvation -30.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds