Wall clock time and date at job start Tue Mar 31 2020 23:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99623 * 2 1 4 4 H 1.48499 * 109.46871 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47349 * 300.00067 * 3 2 1 6 6 H 1.48505 * 109.47162 * 60.00262 * 3 2 1 7 7 C 1.38808 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99330 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00410 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99940 * 180.02562 * 9 7 2 11 11 H 1.08991 * 109.47119 * 34.99718 * 10 9 7 12 12 C 1.53000 * 109.47054 * 155.00291 * 10 9 7 13 13 N 1.46499 * 109.46840 * 304.99499 * 12 10 9 14 14 C 1.34779 * 119.99872 * 180.02562 * 13 12 10 15 15 O 1.21626 * 120.00160 * 0.02562 * 14 13 12 16 16 C 1.47263 * 119.99956 * 180.02562 * 14 13 12 17 17 C 1.36751 * 126.93445 * 180.02562 * 16 14 13 18 18 N 1.34735 * 108.40612 * 179.97438 * 17 16 14 19 19 H 0.96998 * 124.85203 * 180.02562 * 18 17 16 20 20 C 1.36458 * 110.29793 * 359.97438 * 18 17 16 21 21 Br 1.89091 * 125.58193 * 180.02562 * 20 18 17 22 22 C 1.34587 * 108.83597 * 359.74947 * 20 18 17 23 23 C 1.53006 * 109.46878 * 274.99762 * 10 9 7 24 24 C 1.52995 * 117.49555 * 128.74822 * 23 10 9 25 25 C 1.52995 * 117.49792 * 60.09061 * 23 10 9 26 26 H 0.96994 * 120.00251 * 359.97438 * 1 2 3 27 27 H 0.96996 * 119.99970 * 0.02562 * 9 7 2 28 28 H 1.09002 * 109.47398 * 64.99825 * 12 10 9 29 29 H 1.09001 * 109.47194 * 185.00006 * 12 10 9 30 30 H 0.97000 * 120.00420 * 0.02562 * 13 12 10 31 31 H 1.07992 * 125.79611 * 359.97438 * 17 16 14 32 32 H 1.08001 * 126.83921 * 180.26321 * 22 20 18 33 33 H 1.08997 * 115.54853 * 274.41548 * 23 10 9 34 34 H 1.08998 * 117.49984 * 359.97438 * 24 23 10 35 35 H 1.09006 * 117.49830 * 145.02021 * 24 23 10 36 36 H 1.09000 * 117.49832 * 214.98051 * 25 23 10 37 37 H 1.09004 * 117.49814 * 359.97438 * 25 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9689 -3.5504 0.5888 12 6 1.1811 -4.7521 0.6090 13 7 0.7345 -4.3355 1.9406 14 6 -0.0545 -5.1478 2.6716 15 8 -0.3954 -6.2269 2.2258 16 6 -0.5038 -4.7288 4.0099 17 6 -1.3005 -5.4354 4.8679 18 7 -1.4760 -4.7038 5.9856 19 1 -2.0021 -4.9802 6.7521 20 6 -0.8069 -3.5187 5.8855 21 35 -0.7594 -2.1671 7.2071 22 6 -0.1814 -3.4720 4.6948 23 6 2.4221 -4.0355 -1.4376 24 6 3.8823 -4.3890 -1.7268 25 6 3.3029 -3.0621 -2.2233 26 1 -0.4850 0.8400 0.0004 27 1 0.3557 -2.3880 -0.0005 28 1 0.3135 -4.9201 -0.0291 29 1 1.7560 -5.6746 0.6908 30 1 1.0066 -3.4751 2.2963 31 1 -1.7180 -6.4137 4.6812 32 1 0.4335 -2.6683 4.3174 33 1 1.6542 -4.5774 -1.9897 34 1 4.5838 -4.3513 -0.8934 35 1 4.0751 -5.1632 -2.4696 36 1 3.1147 -2.9637 -3.2924 37 1 3.6228 -2.1515 -1.7166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752472716.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:44 Heat of formation + Delta-G solvation = 26.457184 kcal Electronic energy + Delta-G solvation = -21211.363227 eV Core-core repulsion = 17842.904522 eV Total energy + Delta-G solvation = -3368.458705 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.21804 -40.22311 -38.87164 -36.02074 -35.08081 -32.91614 -32.81807 -32.05069 -29.68824 -29.13260 -25.78827 -24.56182 -23.01869 -22.82267 -21.61378 -21.30539 -20.43991 -19.60093 -19.07417 -17.14160 -16.92565 -16.77153 -16.22776 -15.95164 -15.61972 -15.24200 -15.00461 -14.91791 -14.85145 -14.27234 -14.15681 -13.62086 -13.30991 -12.95746 -12.86517 -12.65733 -12.35507 -12.21506 -12.02276 -11.92383 -11.69600 -11.58371 -11.08155 -10.97104 -10.82247 -10.71532 -10.14020 -9.82051 -9.34586 -8.95260 -7.84566 -5.11840 0.22000 0.71667 1.02613 1.50423 1.52557 1.60142 2.14014 2.52855 2.58690 2.62566 3.11950 3.52417 3.84071 3.98038 4.03656 4.05249 4.22328 4.28885 4.40351 4.43902 4.47415 4.62052 4.72682 4.85806 4.93472 4.94781 5.19489 5.22056 5.39288 5.44085 5.51299 5.54949 5.65153 5.66495 6.32228 6.34919 6.72228 7.36170 7.43296 8.14627 8.40303 9.38348 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.010398 B = 0.003719 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.200902 B = 7526.972489 C = 9722.160172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.957 3.043 4 H -0.267 1.267 5 H -0.302 1.302 6 H -0.298 1.298 7 C -0.215 4.215 8 H 0.077 0.923 9 N -0.723 5.723 10 C 0.197 3.803 11 H 0.057 0.943 12 C 0.129 3.871 13 N -0.708 5.708 14 C 0.586 3.414 15 O -0.594 6.594 16 C -0.258 4.258 17 C 0.119 3.881 18 N -0.520 5.520 19 H 0.439 0.561 20 C -0.005 4.005 21 Br 0.017 6.983 22 C -0.125 4.125 23 C -0.173 4.173 24 C -0.162 4.162 25 C -0.174 4.174 26 H 0.246 0.754 27 H 0.372 0.628 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.408 0.592 31 H 0.213 0.787 32 H 0.149 0.851 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.557 -10.269 15.438 18.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.262 4.262 3 Si 0.788 3.212 4 H -0.191 1.191 5 H -0.230 1.230 6 H -0.226 1.226 7 C -0.347 4.347 8 H 0.095 0.905 9 N -0.362 5.362 10 C 0.088 3.912 11 H 0.074 0.926 12 C 0.004 3.996 13 N -0.358 5.358 14 C 0.376 3.624 15 O -0.477 6.477 16 C -0.269 4.269 17 C -0.021 4.021 18 N -0.118 5.118 19 H 0.281 0.719 20 C -0.192 4.192 21 Br 0.100 6.900 22 C -0.152 4.152 23 C -0.194 4.194 24 C -0.199 4.199 25 C -0.211 4.211 26 H 0.055 0.945 27 H 0.205 0.795 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.244 0.756 31 H 0.229 0.771 32 H 0.166 0.834 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.104 0.896 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.669 -10.382 15.768 18.891 hybrid contribution -0.281 1.384 -0.218 1.429 sum -0.951 -8.998 15.550 17.991 Atomic orbital electron populations 1.69816 1.06358 1.25395 1.60095 1.25333 0.96025 1.00278 1.04547 0.85307 0.78490 0.81205 0.76190 1.19118 1.23028 1.22557 1.19474 0.91093 0.84572 1.39538 0.90532 1.42560 1.05294 1.00377 1.87982 1.20150 0.94039 0.84752 0.92248 0.92553 1.21472 0.97895 0.97436 0.82760 1.45773 1.50677 1.21691 1.17614 1.17595 0.77340 0.83221 0.84282 1.90705 1.59566 1.23940 1.73524 1.20358 1.11467 0.98414 0.96637 1.22285 0.97314 0.97847 0.84684 1.41523 1.40288 1.12932 1.17088 0.71908 1.21786 1.08001 0.91237 0.98197 1.96793 1.98315 1.45370 1.49481 1.22153 1.02252 0.97941 0.92893 1.22917 0.93969 1.03884 0.98630 1.23030 0.95144 0.98290 1.03461 1.22733 1.04829 0.94296 0.99274 0.94479 0.79550 0.93089 0.90183 0.75577 0.77082 0.83371 0.88794 0.88634 0.87501 0.89595 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.00 13.06 21.65 0.28 -56.72 16 2 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 3 Si 0.96 44.78 29.55 68.60 2.03 46.81 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 6 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 7 C -0.21 -10.91 8.63 84.03 0.73 -10.19 16 8 H 0.08 3.76 6.91 -2.91 -0.02 3.74 16 9 N -0.72 -33.31 4.54 -322.94 -1.47 -34.78 16 10 C 0.20 7.23 2.70 44.99 0.12 7.35 16 11 H 0.06 2.06 7.84 -2.39 -0.02 2.05 16 12 C 0.13 4.44 5.22 86.38 0.45 4.89 16 13 N -0.71 -24.70 5.38 -466.52 -2.51 -27.21 16 14 C 0.59 20.41 7.81 86.62 0.68 21.09 16 15 O -0.59 -23.30 16.91 -4.11 -0.07 -23.37 16 16 C -0.26 -7.44 6.29 -19.04 -0.12 -7.56 16 17 C 0.12 2.46 11.69 83.90 0.98 3.44 16 18 N -0.52 -8.72 5.90 -189.57 -1.12 -9.84 16 19 H 0.44 3.99 8.96 -92.71 -0.83 3.16 16 20 C 0.00 -0.11 7.61 83.14 0.63 0.52 16 21 Br 0.02 0.34 34.08 -20.37 -0.69 -0.36 16 22 C -0.13 -3.47 10.51 23.65 0.25 -3.22 16 23 C -0.17 -5.79 5.36 -10.79 -0.06 -5.85 16 24 C -0.16 -4.45 10.18 30.61 0.31 -4.14 16 25 C -0.17 -5.94 9.78 30.61 0.30 -5.64 16 26 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 27 H 0.37 19.21 7.80 -92.71 -0.72 18.48 16 28 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.41 14.63 7.26 -92.71 -0.67 13.95 16 31 H 0.21 3.21 8.06 -2.91 -0.02 3.18 16 32 H 0.15 4.34 7.69 -2.91 -0.02 4.32 16 33 H 0.09 3.10 8.11 -2.39 -0.02 3.08 16 34 H 0.10 2.48 8.05 -2.39 -0.02 2.47 16 35 H 0.11 2.44 8.14 -2.38 -0.02 2.42 16 36 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.08 3.15 6.23 -2.38 -0.01 3.13 16 Total: -1.00 -65.64 339.81 0.09 -65.55 By element: Atomic # 1 Polarization: 43.62 SS G_CDS: -1.09 Total: 42.53 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 4.74 Total: -2.62 kcal Atomic # 7 Polarization: -123.73 SS G_CDS: -4.81 Total: -128.54 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.07 Total: -23.37 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 35 Polarization: 0.34 SS G_CDS: -0.69 Total: -0.36 kcal Total: -65.64 0.09 -65.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752472716.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.004 kcal (2) G-P(sol) polarization free energy of solvation -65.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds