Wall clock time and date at job start Tue Mar 31 2020 22:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81405 * 103.00179 * 2 1 4 4 C 1.50707 * 109.46940 * 179.97438 * 3 2 1 5 5 O 1.21293 * 120.00114 * 359.97438 * 4 3 2 6 6 N 1.34771 * 119.99733 * 179.97438 * 4 3 2 7 7 C 1.40053 * 120.00131 * 175.42286 * 6 4 3 8 8 C 1.38863 * 120.01765 * 35.09401 * 7 6 4 9 9 C 1.38063 * 119.98838 * 180.02562 * 8 7 6 10 10 C 1.38739 * 120.01706 * 359.97438 * 9 8 7 11 11 O 1.35969 * 119.98936 * 179.97438 * 10 9 8 12 12 C 1.34247 * 116.99778 * 75.14723 * 11 10 9 13 13 O 1.20830 * 119.99789 * 355.00661 * 12 11 10 14 14 C 1.50699 * 120.00284 * 175.00815 * 12 11 10 15 15 S 1.80999 * 109.47182 * 180.02562 * 14 12 11 16 16 C 1.76196 * 99.99974 * 179.97438 * 15 14 12 17 17 H 1.08007 * 119.99910 * 359.97438 * 16 15 14 18 18 C 1.38803 * 120.00214 * 179.97438 * 16 15 14 19 19 N 1.31626 * 119.99569 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99930 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47002 * 90.00206 * 20 18 16 22 22 H 1.48499 * 109.46836 * 209.99693 * 20 18 16 23 23 H 1.48497 * 109.47190 * 329.99587 * 20 18 16 24 24 C 1.38741 * 120.02421 * 0.26158 * 10 9 8 25 25 C 1.38071 * 120.01694 * 359.47998 * 24 10 9 26 26 H 1.08998 * 109.47329 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47216 * 300.00393 * 1 2 3 28 28 H 1.09008 * 109.46684 * 60.00160 * 1 2 3 29 29 H 1.08992 * 109.47136 * 60.00095 * 3 2 1 30 30 H 1.08996 * 109.46671 * 299.99750 * 3 2 1 31 31 H 0.97001 * 120.00233 * 355.41659 * 6 4 3 32 32 H 1.07998 * 120.00389 * 0.02562 * 8 7 6 33 33 H 1.08002 * 119.99628 * 179.97438 * 9 8 7 34 34 H 1.09002 * 109.46524 * 300.00189 * 14 12 11 35 35 H 1.08996 * 109.47406 * 59.99820 * 14 12 11 36 36 H 0.97005 * 119.99414 * 180.02562 * 19 18 16 37 37 H 1.08006 * 119.98726 * 179.74276 * 24 10 9 38 38 H 1.08003 * 120.00322 * 180.23486 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7196 1.9373 0.0006 5 8 4.4405 0.9619 0.0015 6 7 4.2576 3.1730 0.0002 7 6 5.6456 3.3324 0.0976 8 6 6.4945 2.4122 -0.5033 9 6 7.8627 2.5697 -0.4065 10 6 8.3897 3.6473 0.2906 11 8 9.7372 3.8016 0.3860 12 6 10.3788 4.2449 -0.7067 13 8 9.7736 4.4011 -1.7408 14 6 11.8537 4.5476 -0.6438 15 16 12.4214 5.1223 -2.2635 16 6 14.1260 5.3951 -1.9111 17 1 14.5101 5.2031 -0.9201 18 6 14.9754 5.8568 -2.9071 19 7 14.5074 6.0903 -4.1150 20 14 16.7826 6.1467 -2.5333 21 1 17.5490 4.9034 -2.8009 22 1 17.2971 7.2406 -3.3957 23 1 16.9381 6.5267 -1.1062 24 6 7.5422 4.5644 0.8953 25 6 6.1737 4.4110 0.7947 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8032 2.2371 0.8899 30 1 1.8032 2.2371 -0.8900 31 1 3.6836 3.9519 -0.0676 32 1 6.0844 1.5735 -1.0462 33 1 8.5229 1.8539 -0.8734 34 1 12.0338 5.3236 0.1003 35 1 12.3984 3.6451 -0.3667 36 1 15.1011 6.4126 -4.8112 37 1 7.9531 5.4008 1.4413 38 1 5.5142 5.1271 1.2624 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049055418.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:07 Heat of formation + Delta-G solvation = -74.136406 kcal Electronic energy + Delta-G solvation = -22951.965465 eV Core-core repulsion = 19206.076207 eV Total energy + Delta-G solvation = -3745.889258 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.059 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.21504 -40.54818 -38.37497 -36.56984 -34.81388 -32.50450 -31.37149 -31.17410 -30.03670 -29.34948 -28.16943 -25.58436 -23.55672 -23.30922 -21.34991 -20.72896 -18.44371 -18.12873 -17.78429 -17.61859 -16.58881 -16.51404 -16.33079 -15.97206 -14.86329 -14.77870 -14.70404 -14.64144 -14.27555 -14.18206 -14.13731 -13.62476 -13.58039 -13.31696 -13.06523 -12.80297 -12.70465 -12.49874 -12.36903 -11.76134 -11.12989 -11.08333 -10.98704 -10.82995 -10.57531 -10.50556 -10.27447 -10.08940 -9.93042 -9.13241 -9.13180 -8.40791 -8.28974 -8.14777 -6.63360 -6.29186 -4.02391 0.81470 0.93086 1.20924 1.98819 2.03219 2.50244 2.57122 2.69238 3.19980 3.22787 3.27674 3.43270 3.72448 4.04827 4.13007 4.34048 4.53971 4.59051 4.61830 4.66518 4.75944 4.91590 5.06908 5.16192 5.17701 5.26591 5.30736 5.42274 5.71998 5.80488 5.91984 6.00991 6.03172 6.16908 6.30935 6.53872 6.85455 6.90577 7.53757 7.57869 8.15801 8.28521 9.16404 10.78302 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.040163 B = 0.001650 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.983141 B =16967.704241 C =17202.548568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.179 6.179 3 C -0.129 4.129 4 C 0.529 3.471 5 O -0.494 6.494 6 N -0.667 5.667 7 C 0.136 3.864 8 C -0.103 4.103 9 C -0.100 4.100 10 C 0.082 3.918 11 O -0.299 6.299 12 C 0.476 3.524 13 O -0.469 6.469 14 C -0.127 4.127 15 S -0.056 6.056 16 C -0.537 4.537 17 H 0.077 0.923 18 C 0.075 3.925 19 N -0.867 5.867 20 Si 0.922 3.078 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.271 1.271 24 C -0.102 4.102 25 C -0.128 4.128 26 H 0.106 0.894 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.412 0.588 32 H 0.145 0.855 33 H 0.134 0.866 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.270 0.730 37 H 0.137 0.863 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.263 -5.836 11.451 31.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.045 5.955 3 C -0.280 4.280 4 C 0.314 3.686 5 O -0.367 6.367 6 N -0.314 5.314 7 C 0.042 3.958 8 C -0.123 4.123 9 C -0.119 4.119 10 C 0.040 3.960 11 O -0.216 6.216 12 C 0.317 3.683 13 O -0.351 6.351 14 C -0.275 4.275 15 S 0.170 5.830 16 C -0.685 4.685 17 H 0.095 0.905 18 C -0.135 4.135 19 N -0.502 5.502 20 Si 0.748 3.252 21 H -0.202 1.202 22 H -0.207 1.207 23 H -0.196 1.196 24 C -0.121 4.121 25 C -0.148 4.148 26 H 0.124 0.876 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.248 0.752 32 H 0.163 0.837 33 H 0.152 0.848 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.080 0.920 37 H 0.155 0.845 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -27.877 -7.200 9.966 30.468 hybrid contribution 0.542 1.547 1.305 2.095 sum -27.334 -5.653 11.271 30.103 Atomic orbital electron populations 1.23560 0.95580 1.06993 1.04974 1.87694 1.04827 1.04941 1.98015 1.23486 0.96595 1.00418 1.07539 1.19805 0.89290 0.83101 0.76402 1.90794 1.61577 1.38235 1.46125 1.43315 1.05909 1.08760 1.73385 1.17690 0.82173 0.97299 0.98591 1.21111 0.91988 1.00049 0.99126 1.21294 0.95440 0.97408 0.97743 1.18587 0.81650 0.95395 1.00379 1.84675 1.18255 1.77596 1.41054 1.23779 0.90376 0.73197 0.80918 1.90701 1.67843 1.46281 1.30291 1.23327 0.88842 1.06103 1.09188 1.85453 1.09007 1.84842 1.03678 1.22845 0.93277 1.52232 1.00157 0.90498 1.25003 0.99598 0.94492 0.94359 1.70011 1.36111 1.42175 1.01908 0.86112 0.82433 0.78156 0.78500 1.20159 1.20701 1.19558 1.20935 0.92326 0.98271 1.00541 1.20656 0.94811 0.98976 1.00401 0.87563 0.90390 0.90356 0.86769 0.86741 0.75176 0.83720 0.84820 0.87606 0.87597 0.92037 0.84492 0.84883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.53 10.76 101.05 1.09 0.55 16 2 S -0.18 -1.40 21.52 -107.50 -2.31 -3.72 16 3 C -0.13 -0.67 6.43 36.01 0.23 -0.44 16 4 C 0.53 4.71 7.69 -10.98 -0.08 4.63 16 5 O -0.49 -6.58 13.30 5.55 0.07 -6.51 16 6 N -0.67 -5.01 5.34 -9.83 -0.05 -5.06 16 7 C 0.14 1.49 6.30 -83.64 -0.53 0.96 16 8 C -0.10 -1.38 8.69 -39.41 -0.34 -1.72 16 9 C -0.10 -1.48 9.45 -39.46 -0.37 -1.86 16 10 C 0.08 1.26 5.19 -39.21 -0.20 1.06 16 11 O -0.30 -5.04 10.03 -23.71 -0.24 -5.28 16 12 C 0.48 9.24 7.84 36.01 0.28 9.52 16 13 O -0.47 -10.40 15.29 -18.75 -0.29 -10.69 16 14 C -0.13 -2.56 6.27 36.01 0.23 -2.33 16 15 S -0.06 -1.48 20.57 -107.50 -2.21 -3.70 16 16 C -0.54 -14.95 9.50 30.94 0.29 -14.66 16 17 H 0.08 2.02 7.80 -52.48 -0.41 1.61 16 18 C 0.08 2.10 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -25.63 13.22 55.49 0.73 -24.89 16 20 Si 0.92 21.04 29.55 -169.99 -5.02 16.02 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 C -0.10 -1.26 9.98 -39.46 -0.39 -1.66 16 25 C -0.13 -1.29 9.96 -39.41 -0.39 -1.68 16 26 H 0.11 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.08 0.20 8.14 -51.92 -0.42 -0.22 16 28 H 0.08 0.21 8.14 -51.92 -0.42 -0.21 16 29 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.11 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.41 1.47 8.82 -40.82 -0.36 1.11 16 32 H 0.15 1.99 6.22 -52.49 -0.33 1.67 16 33 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 34 H 0.11 1.95 8.14 -51.91 -0.42 1.53 16 35 H 0.11 1.97 8.14 -51.92 -0.42 1.55 16 36 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 38 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 LS Contribution 366.01 15.07 5.52 5.52 Total: -1.00 -35.85 366.01 -8.55 -44.41 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -4.46 Total: -0.47 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -0.29 Total: -5.63 kcal Atomic # 7 Polarization: -30.63 SS G_CDS: 0.68 Total: -29.95 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.45 Total: -22.47 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -2.89 SS G_CDS: -4.52 Total: -7.41 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.85 -8.55 -44.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049055418.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.728 kcal (2) G-P(sol) polarization free energy of solvation -35.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds