Wall clock time and date at job start Wed Apr 1 2020 00:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31591 * 122.22998 * 2 1 4 4 C 1.29952 * 117.13659 * 180.22247 * 3 2 1 5 5 N 1.38893 * 125.36200 * 179.84082 * 4 3 2 6 6 C 1.34784 * 119.99605 * 179.71616 * 5 4 3 7 7 O 1.21283 * 119.99667 * 359.72756 * 6 5 4 8 8 C 1.50695 * 119.99635 * 179.97438 * 6 5 4 9 9 H 1.09001 * 110.85984 * 297.66193 * 8 6 5 10 10 C 1.54628 * 110.97168 * 61.45395 * 8 6 5 11 11 C 1.51286 * 104.19467 * 142.90924 * 10 8 6 12 12 O 1.21282 * 124.93693 * 163.77821 * 11 10 8 13 13 N 1.34416 * 110.11816 * 343.75669 * 11 10 8 14 14 C 1.46497 * 124.35051 * 179.57189 * 13 11 10 15 15 C 1.46764 * 111.30140 * 359.58549 * 13 11 10 16 16 S 1.76136 * 109.26836 * 359.57424 * 4 3 2 17 17 C 1.34652 * 122.23135 * 179.75210 * 2 1 3 18 18 S 1.76199 * 125.92877 * 359.97419 * 17 2 1 19 19 C 1.76202 * 100.00123 * 179.97438 * 18 17 2 20 20 H 1.07997 * 119.99943 * 0.02562 * 19 18 17 21 21 C 1.38430 * 120.00204 * 179.97438 * 19 18 17 22 22 N 1.31815 * 119.99818 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00048 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47407 * 59.99813 * 23 21 19 25 25 H 1.48499 * 109.47124 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47057 * 299.99866 * 23 21 19 27 27 H 1.09007 * 109.47051 * 270.25135 * 1 2 3 28 28 H 1.09005 * 109.47500 * 30.24348 * 1 2 3 29 29 H 1.08990 * 109.47862 * 150.24973 * 1 2 3 30 30 H 0.96999 * 120.00351 * 359.71395 * 5 4 3 31 31 H 1.08996 * 110.49162 * 261.59550 * 10 8 6 32 32 H 1.09002 * 110.48245 * 24.23647 * 10 8 6 33 33 H 1.09002 * 109.46917 * 0.02562 * 14 13 11 34 34 H 1.08998 * 109.47421 * 120.01554 * 14 13 11 35 35 H 1.09001 * 109.46973 * 240.02247 * 14 13 11 36 36 H 1.09004 * 110.24357 * 258.02341 * 15 13 11 37 37 H 1.08995 * 110.24940 * 136.02075 * 15 13 11 38 38 H 0.97001 * 119.99795 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5031 0.9978 -0.0045 5 7 4.4043 2.0546 -0.0084 6 6 5.7298 1.8100 -0.0071 7 8 6.1354 0.6670 0.0024 8 6 6.7076 2.9566 -0.0120 9 1 6.5998 3.5549 -0.9167 10 6 6.5415 3.8309 1.2525 11 6 7.9539 4.2382 1.6101 12 8 8.2463 5.1430 2.3630 13 7 8.8375 3.4511 0.9725 14 6 10.2923 3.5790 1.0880 15 6 8.1576 2.4474 0.1454 16 16 3.9345 -0.7099 0.0029 17 6 2.2251 -1.1390 0.0049 18 16 1.5696 -2.7745 0.0126 19 6 3.0665 -3.7041 0.0155 20 1 4.0186 -3.1944 0.0130 21 6 3.0221 -5.0877 0.0222 22 7 1.8599 -5.7097 0.0259 23 14 4.6089 -6.0731 0.0260 24 1 5.3995 -5.7337 1.2363 25 1 4.2908 -7.5236 0.0325 26 1 5.3980 -5.7453 -1.1886 27 1 -0.3633 0.0045 1.0277 28 1 -0.3634 0.8878 -0.5176 29 1 -0.3634 -0.8921 -0.5099 30 1 4.0799 2.9687 -0.0121 31 1 5.9353 4.7095 1.0320 32 1 6.0953 3.2516 2.0609 33 1 10.5323 4.4006 1.7629 34 1 10.7084 2.6519 1.4821 35 1 10.7186 3.7798 0.1051 36 1 8.1650 1.4788 0.6454 37 1 8.6391 2.3730 -0.8296 38 1 1.8288 -6.6792 0.0302 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131297128.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:12 Heat of formation + Delta-G solvation = -50.464970 kcal Electronic energy + Delta-G solvation = -24024.305241 eV Core-core repulsion = 20311.735205 eV Total energy + Delta-G solvation = -3712.570036 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.13552 -40.85672 -40.04979 -37.47522 -36.18222 -34.79957 -34.07982 -31.95524 -28.96075 -28.73474 -28.03194 -27.68879 -25.68276 -23.67390 -22.26749 -21.10621 -20.66056 -19.79026 -19.12298 -18.49151 -17.90083 -17.37988 -17.17683 -17.04811 -16.69758 -16.43905 -15.89825 -15.57595 -15.19238 -14.92543 -14.81450 -14.60949 -14.36758 -14.22386 -13.51090 -13.40825 -13.38169 -13.26515 -13.19182 -13.05042 -12.86396 -12.61016 -12.55715 -12.26151 -12.10763 -12.02757 -11.42640 -11.32177 -11.03198 -10.75921 -10.45921 -10.44574 -9.80943 -9.49560 -8.55978 -8.35534 -6.28483 -0.21186 0.24265 0.84205 1.14120 1.28123 1.37263 1.40537 1.43009 1.45668 1.62403 2.02019 2.04137 2.16265 2.83508 2.98382 3.11322 3.18659 3.51730 3.77043 3.80708 4.06659 4.34251 4.41757 4.46017 4.57353 4.63761 4.70026 4.73067 4.85467 4.86534 4.87003 4.99316 5.08117 5.30647 5.41055 5.49217 5.92695 5.97484 6.03288 6.73688 6.88572 6.89734 7.01323 8.51468 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.013851 B = 0.003064 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.067072 B = 9136.228509 C =10892.074471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.038 3.962 3 N -0.482 5.482 4 C 0.227 3.773 5 N -0.598 5.598 6 C 0.522 3.478 7 O -0.531 6.531 8 C -0.095 4.095 9 H 0.171 0.829 10 C -0.143 4.143 11 C 0.512 3.488 12 O -0.576 6.576 13 N -0.621 5.621 14 C 0.087 3.913 15 C 0.115 3.885 16 S 0.162 5.838 17 C -0.282 4.282 18 S 0.096 5.904 19 C -0.575 4.575 20 H 0.082 0.918 21 C 0.035 3.965 22 N -0.897 5.897 23 Si 0.985 3.015 24 H -0.265 1.265 25 H -0.267 1.267 26 H -0.263 1.263 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.438 0.562 31 H 0.145 0.855 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.846 18.394 -2.424 21.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.104 4.104 3 N -0.204 5.204 4 C -0.146 4.146 5 N -0.250 5.250 6 C 0.309 3.691 7 O -0.407 6.407 8 C -0.116 4.116 9 H 0.188 0.812 10 C -0.183 4.183 11 C 0.301 3.699 12 O -0.456 6.456 13 N -0.354 5.354 14 C -0.055 4.055 15 C -0.008 4.008 16 S 0.407 5.593 17 C -0.518 4.518 18 S 0.343 5.657 19 C -0.723 4.723 20 H 0.100 0.900 21 C -0.172 4.172 22 N -0.531 5.531 23 Si 0.806 3.194 24 H -0.189 1.189 25 H -0.191 1.191 26 H -0.187 1.187 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.085 0.915 30 H 0.280 0.720 31 H 0.163 0.837 32 H 0.126 0.874 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.134 0.866 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.899 17.286 -2.020 20.535 hybrid contribution 0.896 -0.111 0.158 0.916 sum 11.795 17.175 -1.862 20.919 Atomic orbital electron populations 1.20243 0.85911 1.03105 1.03014 1.19654 0.98326 0.84216 1.08170 1.66016 1.02834 1.31253 1.20248 1.24112 0.90199 0.92993 1.07292 1.42484 1.03867 1.08041 1.70561 1.21105 0.81724 0.91336 0.74955 1.90750 1.77265 1.24232 1.48426 1.22162 0.92464 0.93846 1.03115 0.81209 1.22450 0.95252 1.02868 0.97687 1.21163 0.89201 0.80635 0.78895 1.90725 1.83900 1.32544 1.38431 1.48346 1.07498 1.33094 1.46487 1.21753 0.77036 1.02997 1.03665 1.22079 0.89895 0.91311 0.97518 1.85959 1.02006 0.98047 1.73305 1.28572 1.01878 1.05890 1.15416 1.82952 1.11299 0.86441 1.84972 1.23417 0.93874 0.94785 1.60237 0.89962 1.25887 1.01344 0.97487 0.92520 1.70093 1.26219 1.10738 1.46097 0.85188 0.77357 0.77199 0.79685 1.18939 1.19078 1.18743 0.90465 0.89464 0.91476 0.71962 0.83656 0.87364 0.91056 0.90900 0.89444 0.90500 0.86612 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.05 10.02 71.23 0.71 -1.34 16 2 C 0.04 1.48 6.73 41.77 0.28 1.77 16 3 N -0.48 -17.06 10.55 -184.87 -1.95 -19.01 16 4 C 0.23 7.50 8.40 179.15 1.50 9.00 16 5 N -0.60 -12.65 5.35 -309.57 -1.66 -14.30 16 6 C 0.52 10.33 7.03 87.65 0.62 10.94 16 7 O -0.53 -15.48 13.09 -3.04 -0.04 -15.52 16 8 C -0.09 -0.94 3.54 -10.48 -0.04 -0.98 16 9 H 0.17 0.41 8.14 -2.39 -0.02 0.39 16 10 C -0.14 -1.58 6.37 30.59 0.19 -1.39 16 11 C 0.51 9.46 8.02 87.90 0.71 10.17 16 12 O -0.58 -15.70 17.35 -3.04 -0.05 -15.75 16 13 N -0.62 -9.06 3.33 -842.89 -2.81 -11.87 16 14 C 0.09 0.98 11.14 127.77 1.42 2.41 16 15 C 0.11 1.37 6.67 86.83 0.58 1.95 16 16 S 0.16 6.72 18.35 -56.49 -1.04 5.68 16 17 C -0.28 -12.70 6.67 67.00 0.45 -12.25 16 18 S 0.10 4.89 20.74 -56.49 -1.17 3.72 16 19 C -0.57 -31.72 9.26 67.87 0.63 -31.09 16 20 H 0.08 4.48 5.97 -2.91 -0.02 4.46 16 21 C 0.03 1.87 5.49 84.74 0.46 2.34 16 22 N -0.90 -50.23 13.22 21.59 0.29 -49.95 16 23 Si 0.98 42.15 29.55 68.60 2.03 44.18 16 24 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 25 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 26 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 27 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 28 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 29 H 0.07 2.26 7.37 -2.39 -0.02 2.24 16 30 H 0.44 5.69 8.82 -92.71 -0.82 4.87 16 31 H 0.15 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.11 1.39 7.89 -2.39 -0.02 1.37 16 33 H 0.07 1.02 7.53 -2.39 -0.02 1.00 16 34 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.08 1.28 7.05 -2.39 -0.02 1.26 16 37 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.28 14.57 8.32 -92.71 -0.77 13.80 16 Total: -1.00 -76.41 352.16 1.43 -74.99 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: 0.31 Total: 6.30 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 7.52 Total: -8.46 kcal Atomic # 7 Polarization: -89.00 SS G_CDS: -6.13 Total: -95.13 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.09 Total: -31.27 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Atomic # 16 Polarization: 11.61 SS G_CDS: -2.21 Total: 9.41 kcal Total: -76.41 1.43 -74.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131297128.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.521 kcal (2) G-P(sol) polarization free energy of solvation -76.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds