Wall clock time and date at job start Tue Mar 31 2020 22:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31640 * 1 3 3 Si 1.86792 * 119.99889 * 2 1 4 4 H 1.48505 * 109.46966 * 269.99569 * 3 2 1 5 5 H 1.48500 * 109.47223 * 29.99659 * 3 2 1 6 6 H 1.48501 * 109.47335 * 149.99733 * 3 2 1 7 7 C 1.38801 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99380 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00163 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00068 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47349 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00025 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00035 * 180.02562 * 11 10 9 14 14 C 1.47152 * 120.98258 * 359.97438 * 13 11 10 15 15 C 1.53301 * 108.38328 * 230.51614 * 14 13 11 16 16 O 1.42959 * 109.22143 * 307.69341 * 15 14 13 17 17 C 1.42963 * 114.16402 * 62.58311 * 16 15 14 18 18 H 1.08994 * 109.51028 * 57.39590 * 17 16 15 19 19 C 1.50709 * 109.51028 * 177.49495 * 17 16 15 20 20 C 1.38228 * 120.00324 * 24.99988 * 19 17 16 21 21 C 1.38231 * 120.00901 * 180.02562 * 20 19 17 22 22 C 1.38262 * 120.02498 * 359.97438 * 21 20 19 23 23 C 1.38191 * 120.01281 * 359.97438 * 22 21 20 24 24 C 1.38328 * 120.00463 * 204.72600 * 19 17 16 25 25 Cl 1.73608 * 120.01300 * 359.97438 * 24 19 17 26 26 C 1.47145 * 120.98294 * 179.71566 * 13 11 10 27 27 H 0.97001 * 119.99781 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47013 * 300.00500 * 10 9 7 29 29 H 1.09004 * 109.47116 * 59.99987 * 10 9 7 30 30 H 1.09002 * 109.68318 * 350.23575 * 14 13 11 31 31 H 1.08999 * 109.68751 * 110.78984 * 14 13 11 32 32 H 1.08994 * 109.51436 * 67.61851 * 15 14 13 33 33 H 1.09009 * 109.51031 * 187.72118 * 15 14 13 34 34 H 1.07996 * 120.00115 * 0.02562 * 20 19 17 35 35 H 1.07999 * 119.98377 * 179.97438 * 21 20 19 36 36 H 1.08003 * 119.99054 * 179.97438 * 22 21 20 37 37 H 1.07999 * 120.00364 * 180.02562 * 23 22 21 38 38 H 1.09004 * 109.68477 * 249.20577 * 26 13 11 39 39 H 1.09004 * 109.68621 * 9.75883 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0019 10 6 2.5158 -3.8915 0.0029 11 6 1.9873 -5.3027 0.0036 12 8 0.7910 -5.5023 0.0038 13 7 2.8441 -6.3431 0.0049 14 6 4.2995 -6.1259 0.0052 15 6 4.9146 -6.9706 -1.1165 16 8 4.4747 -8.3241 -0.9817 17 6 3.0618 -8.4963 -1.1151 18 1 2.7378 -8.1112 -2.0819 19 6 2.7218 -9.9613 -1.0172 20 6 3.5638 -10.8224 -0.3389 21 6 3.2523 -12.1662 -0.2494 22 6 2.0983 -12.6496 -0.8378 23 6 1.2553 -11.7894 -1.5153 24 6 1.5642 -10.4433 -1.6012 25 17 0.5023 -9.3609 -2.4467 26 6 2.3518 -7.7298 0.0118 27 1 -0.4850 0.8401 -0.0004 28 1 3.1245 -3.7321 -0.8872 29 1 3.1244 -3.7306 0.8928 30 1 4.5134 -5.0715 -0.1698 31 1 4.7161 -6.4311 0.9651 32 1 4.5971 -6.5791 -2.0829 33 1 6.0018 -6.9317 -1.0472 34 1 4.4651 -10.4454 0.1213 35 1 3.9107 -12.8388 0.2803 36 1 1.8557 -13.6997 -0.7680 37 1 0.3537 -12.1670 -1.9745 38 1 2.5753 -8.1940 0.9724 39 1 1.2752 -7.7381 -0.1588 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171554415.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:20 Heat of formation + Delta-G solvation = -53.336061 kcal Electronic energy + Delta-G solvation = -24430.622550 eV Core-core repulsion = 20683.591556 eV Total energy + Delta-G solvation = -3747.030994 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.064 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.58652 -39.40337 -38.05487 -36.66941 -34.70430 -33.31236 -32.44899 -31.06876 -30.25735 -29.43598 -27.13663 -25.51459 -24.48273 -23.29575 -22.59928 -21.24116 -19.33199 -17.89618 -17.48175 -16.90351 -16.77102 -16.05914 -15.92447 -15.46263 -15.15672 -14.82514 -14.81773 -14.72938 -14.12202 -14.04955 -13.72990 -13.51982 -13.40070 -12.98408 -12.58081 -12.27113 -12.04458 -11.86741 -11.85553 -11.69778 -11.60721 -11.08205 -11.04990 -11.02408 -10.84380 -10.76715 -10.33391 -9.83665 -9.46990 -9.26378 -9.08744 -9.03397 -8.49214 -8.25717 -6.53015 -6.23694 -3.94750 0.76719 0.92008 1.88716 2.78279 2.97846 3.19977 3.20809 3.24926 3.28607 3.35448 3.52882 4.17775 4.34120 4.48681 4.58248 4.60917 4.70604 4.82607 4.90231 4.97329 5.04398 5.09907 5.11608 5.16216 5.28376 5.39936 5.42977 5.57432 5.59127 5.67531 5.77331 5.82393 5.87836 5.99828 6.05719 6.07373 6.41508 6.46174 6.83442 7.43943 7.57243 8.32781 8.47432 9.21465 10.83715 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.023142 B = 0.002542 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.607030 B =11013.888185 C =11799.734857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.150 4.150 11 C 0.536 3.464 12 O -0.510 6.510 13 N -0.624 5.624 14 C 0.072 3.928 15 C 0.049 3.951 16 O -0.374 6.374 17 C 0.118 3.882 18 H 0.081 0.919 19 C -0.073 4.073 20 C -0.080 4.080 21 C -0.119 4.119 22 C -0.106 4.106 23 C -0.111 4.111 24 C -0.028 4.028 25 Cl -0.056 7.056 26 C 0.094 3.906 27 H 0.269 0.731 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.110 0.890 34 H 0.140 0.860 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.073 0.927 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.354 -24.918 -2.150 27.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.301 4.301 11 C 0.324 3.676 12 O -0.384 6.384 13 N -0.361 5.361 14 C -0.051 4.051 15 C -0.028 4.028 16 O -0.293 6.293 17 C 0.059 3.941 18 H 0.099 0.901 19 C -0.075 4.075 20 C -0.098 4.098 21 C -0.137 4.137 22 C -0.125 4.125 23 C -0.130 4.130 24 C -0.055 4.055 25 Cl -0.027 7.027 26 C -0.030 4.030 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.128 0.872 34 H 0.157 0.843 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.153 0.847 38 H 0.091 0.909 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.411 -25.123 -2.184 26.584 hybrid contribution 1.795 1.594 -0.114 2.403 sum 10.206 -23.529 -2.298 25.750 Atomic orbital electron populations 1.70022 1.05959 1.27491 1.46761 1.25000 0.95036 0.99048 0.94515 0.86162 0.79401 0.81543 0.78358 1.20256 1.20733 1.19685 1.22849 0.94870 0.91586 1.59061 0.90927 1.85441 1.04809 0.96317 1.96697 1.23553 1.06634 0.95157 1.04744 1.20389 0.86189 0.86087 0.74914 1.90706 1.15038 1.85080 1.47542 1.48158 1.06338 1.05500 1.76139 1.22439 0.80553 1.02159 0.99967 1.23029 1.00000 0.81863 0.97939 1.87880 1.21150 1.26736 1.93487 1.21297 0.82305 0.91184 0.99318 0.90082 1.19330 0.94195 0.94751 0.99200 1.21020 0.99087 0.92655 0.97035 1.21294 0.97246 0.95573 0.99614 1.21167 0.94346 0.99844 0.97109 1.21034 1.00754 0.90975 1.00235 1.20817 0.93275 0.91798 0.99614 1.98424 1.64340 1.63863 1.76087 1.22189 1.01285 0.81378 0.98104 0.92153 0.89231 0.89140 0.88086 0.90488 0.92217 0.87221 0.84263 0.85236 0.85051 0.84677 0.90864 0.87654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.12 13.22 55.49 0.73 -25.38 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.54 -15.13 9.50 30.94 0.29 -14.84 16 8 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -3.03 4.53 36.00 0.16 -2.87 16 11 C 0.54 10.32 7.73 -10.99 -0.08 10.23 16 12 O -0.51 -11.79 15.33 5.56 0.09 -11.70 16 13 N -0.62 -9.18 3.01 -172.04 -0.52 -9.70 16 14 C 0.07 0.78 6.54 -3.53 -0.02 0.76 16 15 C 0.05 0.46 6.98 37.31 0.26 0.72 16 16 O -0.37 -4.07 9.22 -35.23 -0.32 -4.40 16 17 C 0.12 1.39 2.51 -27.53 -0.07 1.32 16 18 H 0.08 1.05 7.14 -51.93 -0.37 0.68 16 19 C -0.07 -0.79 5.07 -104.59 -0.53 -1.32 16 20 C -0.08 -0.72 9.35 -39.59 -0.37 -1.09 16 21 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 22 C -0.11 -0.75 10.05 -39.59 -0.40 -1.15 16 23 C -0.11 -0.95 9.83 -39.55 -0.39 -1.34 16 24 C -0.03 -0.30 6.31 -39.50 -0.25 -0.55 16 25 Cl -0.06 -0.67 27.23 -51.86 -1.41 -2.08 16 26 C 0.09 1.27 5.93 -3.34 -0.02 1.25 16 27 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 28 H 0.09 1.65 7.66 -51.92 -0.40 1.25 16 29 H 0.09 1.68 8.02 -51.91 -0.42 1.26 16 30 H 0.10 1.05 6.05 -51.93 -0.31 0.73 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.11 0.72 8.14 -51.92 -0.42 0.30 16 34 H 0.14 1.16 7.35 -52.49 -0.39 0.77 16 35 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 36 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 37 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.11 1.64 6.90 -51.93 -0.36 1.28 16 LS Contribution 355.31 15.07 5.35 5.35 Total: -1.00 -34.45 355.31 -9.97 -44.42 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -4.75 Total: -0.80 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -1.91 Total: -8.14 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.22 Total: -35.09 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.24 Total: -16.10 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.41 Total: -2.08 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.45 -9.97 -44.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171554415.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.914 kcal (2) G-P(sol) polarization free energy of solvation -34.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds