Wall clock time and date at job start Tue Mar 31 2020 22:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31640 * 1 3 3 Si 1.86792 * 119.99889 * 2 1 4 4 H 1.48505 * 109.46966 * 269.99569 * 3 2 1 5 5 H 1.48500 * 109.47223 * 29.99659 * 3 2 1 6 6 H 1.48501 * 109.47335 * 149.99733 * 3 2 1 7 7 C 1.38801 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99380 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00163 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00068 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47349 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00025 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00035 * 180.02562 * 11 10 9 14 14 C 1.47152 * 120.98258 * 359.97438 * 13 11 10 15 15 C 1.53301 * 108.38328 * 230.51614 * 14 13 11 16 16 O 1.42959 * 109.22143 * 307.69341 * 15 14 13 17 17 C 1.42963 * 114.16402 * 62.58311 * 16 15 14 18 18 H 1.08994 * 109.51028 * 57.39590 * 17 16 15 19 19 C 1.50709 * 109.51028 * 177.49495 * 17 16 15 20 20 C 1.38228 * 120.00324 * 24.99988 * 19 17 16 21 21 C 1.38231 * 120.00901 * 180.02562 * 20 19 17 22 22 C 1.38262 * 120.02498 * 359.97438 * 21 20 19 23 23 C 1.38191 * 120.01281 * 359.97438 * 22 21 20 24 24 C 1.38328 * 120.00463 * 204.72600 * 19 17 16 25 25 Cl 1.73608 * 120.01300 * 359.97438 * 24 19 17 26 26 C 1.47145 * 120.98294 * 179.71566 * 13 11 10 27 27 H 0.97001 * 119.99781 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47013 * 300.00500 * 10 9 7 29 29 H 1.09004 * 109.47116 * 59.99987 * 10 9 7 30 30 H 1.09002 * 109.68318 * 350.23575 * 14 13 11 31 31 H 1.08999 * 109.68751 * 110.78984 * 14 13 11 32 32 H 1.08994 * 109.51436 * 67.61851 * 15 14 13 33 33 H 1.09009 * 109.51031 * 187.72118 * 15 14 13 34 34 H 1.07996 * 120.00115 * 0.02562 * 20 19 17 35 35 H 1.07999 * 119.98377 * 179.97438 * 21 20 19 36 36 H 1.08003 * 119.99054 * 179.97438 * 22 21 20 37 37 H 1.07999 * 120.00364 * 180.02562 * 23 22 21 38 38 H 1.09004 * 109.68477 * 249.20577 * 26 13 11 39 39 H 1.09004 * 109.68621 * 9.75883 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0019 10 6 2.5158 -3.8915 0.0029 11 6 1.9873 -5.3027 0.0036 12 8 0.7910 -5.5023 0.0038 13 7 2.8441 -6.3431 0.0049 14 6 4.2995 -6.1259 0.0052 15 6 4.9146 -6.9706 -1.1165 16 8 4.4747 -8.3241 -0.9817 17 6 3.0618 -8.4963 -1.1151 18 1 2.7378 -8.1112 -2.0819 19 6 2.7218 -9.9613 -1.0172 20 6 3.5638 -10.8224 -0.3389 21 6 3.2523 -12.1662 -0.2494 22 6 2.0983 -12.6496 -0.8378 23 6 1.2553 -11.7894 -1.5153 24 6 1.5642 -10.4433 -1.6012 25 17 0.5023 -9.3609 -2.4467 26 6 2.3518 -7.7298 0.0118 27 1 -0.4850 0.8401 -0.0004 28 1 3.1245 -3.7321 -0.8872 29 1 3.1244 -3.7306 0.8928 30 1 4.5134 -5.0715 -0.1698 31 1 4.7161 -6.4311 0.9651 32 1 4.5971 -6.5791 -2.0829 33 1 6.0018 -6.9317 -1.0472 34 1 4.4651 -10.4454 0.1213 35 1 3.9107 -12.8388 0.2803 36 1 1.8557 -13.6997 -0.7680 37 1 0.3537 -12.1670 -1.9745 38 1 2.5753 -8.1940 0.9724 39 1 1.2752 -7.7381 -0.1588 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171554415.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:19 Heat of formation + Delta-G solvation = -74.722579 kcal Electronic energy + Delta-G solvation = -24431.549939 eV Core-core repulsion = 20683.591556 eV Total energy + Delta-G solvation = -3747.958383 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.064 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.61543 -40.37073 -39.15297 -37.48950 -35.93020 -34.59553 -34.12960 -31.73922 -31.43708 -30.56000 -28.27753 -27.61659 -25.42699 -24.12401 -23.37060 -22.09109 -20.69195 -19.64945 -18.50963 -18.04295 -17.74779 -17.16163 -16.93526 -16.88977 -16.54956 -16.19623 -15.84992 -15.66005 -15.47346 -14.85009 -14.83890 -14.70506 -14.51992 -14.38120 -13.77319 -13.57168 -13.26337 -13.12386 -12.90280 -12.77575 -12.65843 -12.60479 -12.49039 -12.32178 -11.86204 -11.76332 -11.70448 -11.29714 -11.15252 -10.96144 -10.28744 -10.03542 -9.78428 -9.56299 -8.69896 -8.35731 -6.14698 0.08471 0.27132 1.10421 1.20747 1.42186 1.43018 1.47456 1.54837 1.93527 2.25787 2.45981 2.64745 2.98640 3.19459 3.52221 3.61540 3.67197 3.83494 3.88272 3.99988 4.12380 4.13486 4.23486 4.27132 4.37123 4.38755 4.43858 4.49859 4.60761 4.67534 4.75892 4.86040 4.97097 5.24353 5.29232 5.34441 5.40716 5.46478 5.85003 5.98347 6.12789 6.18927 7.01462 7.05438 8.73590 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.023142 B = 0.002542 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.607030 B =11013.888185 C =11799.734857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.256 1.256 7 C -0.544 4.544 8 H 0.085 0.915 9 S -0.153 6.153 10 C -0.122 4.122 11 C 0.534 3.466 12 O -0.561 6.561 13 N -0.614 5.614 14 C 0.064 3.936 15 C 0.048 3.952 16 O -0.372 6.372 17 C 0.130 3.870 18 H 0.063 0.937 19 C -0.093 4.093 20 C -0.085 4.085 21 C -0.113 4.113 22 C -0.099 4.099 23 C -0.118 4.118 24 C -0.046 4.046 25 Cl -0.082 7.082 26 C 0.094 3.906 27 H 0.271 0.729 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.053 0.947 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.161 0.839 36 H 0.164 0.836 37 H 0.147 0.853 38 H 0.086 0.914 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.827 -26.401 -1.603 29.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.180 1.180 7 C -0.691 4.691 8 H 0.103 0.897 9 S 0.074 5.926 10 C -0.273 4.273 11 C 0.322 3.678 12 O -0.439 6.439 13 N -0.349 5.349 14 C -0.058 4.058 15 C -0.028 4.028 16 O -0.290 6.290 17 C 0.071 3.929 18 H 0.081 0.919 19 C -0.095 4.095 20 C -0.103 4.103 21 C -0.131 4.131 22 C -0.117 4.117 23 C -0.137 4.137 24 C -0.073 4.073 25 Cl -0.053 7.053 26 C -0.029 4.029 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.127 0.873 31 H 0.118 0.882 32 H 0.072 0.928 33 H 0.165 0.835 34 H 0.165 0.835 35 H 0.178 0.822 36 H 0.181 0.819 37 H 0.165 0.835 38 H 0.104 0.896 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.943 -26.647 -1.640 29.247 hybrid contribution 0.802 1.842 -0.261 2.026 sum 12.745 -24.804 -1.901 27.952 Atomic orbital electron populations 1.70196 1.08052 1.28625 1.48025 1.26161 0.95969 1.03412 0.93726 0.84932 0.78240 0.75877 0.78804 1.19306 1.20414 1.17960 1.23187 0.95379 0.91710 1.58852 0.89662 1.85667 1.10534 0.99384 1.97040 1.23357 1.03559 0.93723 1.06670 1.20252 0.85943 0.86663 0.74967 1.90689 1.17201 1.85694 1.50299 1.48157 1.07742 1.04983 1.73989 1.22822 0.77779 1.03246 1.01921 1.23228 1.01920 0.80789 0.96889 1.87893 1.20220 1.27627 1.93285 1.21032 0.82592 0.91890 0.97382 0.91943 1.19338 0.95008 0.94285 1.00826 1.21194 0.98991 0.93346 0.96751 1.21679 0.97467 0.95172 0.98766 1.21577 0.93547 1.01113 0.95466 1.21307 1.01646 0.90276 1.00430 1.21016 0.93328 0.92360 1.00586 1.98411 1.65216 1.64936 1.76780 1.22259 1.00184 0.80782 0.99630 0.92009 0.87105 0.87011 0.87312 0.88236 0.92848 0.83468 0.83512 0.82161 0.81857 0.83501 0.89574 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.35 13.22 21.65 0.29 -56.07 16 2 C 0.01 0.68 5.49 84.86 0.47 1.14 16 3 Si 1.00 43.39 29.55 68.60 2.03 45.41 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 7 C -0.54 -30.88 9.50 67.95 0.65 -30.24 16 8 H 0.09 4.45 7.80 -2.91 -0.02 4.42 16 9 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 10 C -0.12 -4.90 4.53 71.24 0.32 -4.57 16 11 C 0.53 20.90 7.73 87.66 0.68 21.58 16 12 O -0.56 -27.31 15.33 -3.04 -0.05 -27.35 16 13 N -0.61 -17.73 3.01 -816.60 -2.46 -20.20 16 14 C 0.06 1.23 6.54 86.36 0.56 1.79 16 15 C 0.05 0.78 6.98 72.08 0.50 1.28 16 16 O -0.37 -7.34 9.22 -148.98 -1.37 -8.71 16 17 C 0.13 3.03 2.51 30.08 0.08 3.10 16 18 H 0.06 1.68 7.14 -2.39 -0.02 1.66 16 19 C -0.09 -1.94 5.07 -19.84 -0.10 -2.04 16 20 C -0.08 -1.34 9.35 22.27 0.21 -1.13 16 21 C -0.11 -1.26 10.05 22.27 0.22 -1.04 16 22 C -0.10 -1.09 10.05 22.26 0.22 -0.87 16 23 C -0.12 -1.86 9.83 22.29 0.22 -1.64 16 24 C -0.05 -0.98 6.31 22.32 0.14 -0.84 16 25 Cl -0.08 -2.09 27.23 -2.72 -0.07 -2.17 16 26 C 0.09 2.57 5.93 86.48 0.51 3.09 16 27 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 28 H 0.11 3.95 7.66 -2.39 -0.02 3.93 16 29 H 0.11 3.99 8.02 -2.39 -0.02 3.97 16 30 H 0.11 1.93 6.05 -2.39 -0.01 1.91 16 31 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.15 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.15 2.04 7.35 -2.91 -0.02 2.02 16 35 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 36 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 37 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 38 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.08 2.62 6.90 -2.39 -0.02 2.60 16 Total: -1.00 -78.94 355.31 2.95 -75.99 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 1.07 Total: 13.24 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: 4.68 Total: -10.38 kcal Atomic # 7 Polarization: -74.09 SS G_CDS: -2.18 Total: -76.26 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -1.42 Total: -36.07 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Atomic # 17 Polarization: -2.09 SS G_CDS: -0.07 Total: -2.17 kcal Total: -78.94 2.95 -75.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171554415.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.270 kcal (2) G-P(sol) polarization free energy of solvation -78.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds