Wall clock time and date at job start Wed Apr 1 2020 00:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45205 * 109.47150 * 2 1 4 4 C 1.34228 * 116.99509 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00476 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99580 * 179.97438 * 4 3 2 7 7 H 1.08997 * 110.80841 * 53.13984 * 6 4 3 8 8 C 1.54702 * 110.75133 * 289.82334 * 6 4 3 9 9 C 1.51646 * 101.92542 * 216.39742 * 8 6 4 10 10 C 1.37747 * 132.16471 * 195.88825 * 9 8 6 11 11 C 1.38347 * 119.97439 * 179.03517 * 10 9 8 12 12 S 1.76201 * 120.11408 * 179.97438 * 11 10 9 13 13 O 1.42104 * 106.40191 * 203.54587 * 12 11 10 14 14 O 1.42102 * 106.40227 * 336.45681 * 12 11 10 15 15 N 1.65593 * 107.22083 * 90.00262 * 12 11 10 16 16 C 1.36937 * 119.99885 * 64.99594 * 15 12 11 17 17 H 1.07997 * 120.00233 * 0.02562 * 16 15 12 18 18 C 1.38818 * 119.99934 * 179.97438 * 16 15 12 19 19 N 1.31619 * 119.99953 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00119 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47119 * 60.00357 * 20 18 16 22 22 H 1.48498 * 109.47340 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47395 * 300.00792 * 20 18 16 24 24 C 1.38281 * 119.76760 * 359.97438 * 11 10 9 25 25 C 1.37932 * 120.35333 * 0.19557 * 24 11 10 26 26 C 1.38873 * 107.04417 * 15.36895 * 9 8 6 27 27 O 1.36135 * 111.23456 * 1.09135 * 26 9 8 28 28 H 1.09003 * 109.47157 * 300.00734 * 1 2 3 29 29 H 1.09000 * 109.46784 * 60.00219 * 1 2 3 30 30 H 1.08996 * 109.47301 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47302 * 239.99565 * 2 1 3 32 32 H 1.09000 * 109.46784 * 119.99781 * 2 1 3 33 33 H 1.09001 * 110.94164 * 334.55663 * 8 6 4 34 34 H 1.09004 * 110.93980 * 98.23796 * 8 6 4 35 35 H 1.08000 * 120.01298 * 359.06327 * 10 9 8 36 36 H 0.97001 * 120.00099 * 244.99588 * 15 12 11 37 37 H 0.96993 * 120.00064 * 179.97438 * 19 18 16 38 38 H 1.08007 * 119.82503 * 180.21087 * 24 11 10 39 39 H 1.07994 * 119.88072 * 180.02562 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5037 3.5293 0.8146 8 6 3.6777 3.6306 -1.3615 9 6 4.9532 4.4316 -1.5375 10 6 5.2808 5.4769 -2.3726 11 6 6.5406 6.0450 -2.3075 12 16 6.9637 7.3819 -3.3745 13 8 8.3806 7.3753 -3.4833 14 8 6.0977 7.2887 -4.4972 15 7 6.5615 8.7827 -2.5884 16 6 7.2131 9.1325 -1.4359 17 1 7.9896 8.4949 -1.0398 18 6 6.8763 10.3071 -0.7773 19 7 5.9303 11.0844 -1.2603 20 14 7.7656 10.7846 0.7945 21 1 9.2168 10.9326 0.5167 22 1 7.2237 12.0721 1.2983 23 1 7.5629 9.7282 1.8184 24 6 7.4664 5.5601 -1.4020 25 6 7.1416 4.5111 -0.5673 26 6 5.8772 3.9303 -0.6300 27 8 5.3555 2.8952 0.0838 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.5662 2.8955 -2.1585 34 1 2.8087 4.2870 -1.3147 35 1 4.5544 5.8532 -3.0777 36 1 5.8644 9.3556 -2.9444 37 1 5.6947 11.9050 -0.7999 38 1 8.4490 6.0051 -1.3480 39 1 7.8704 4.1387 0.1373 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269668597.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:31 Heat of formation + Delta-G solvation = -158.538422 kcal Electronic energy + Delta-G solvation = -27000.170861 eV Core-core repulsion = 22807.868786 eV Total energy + Delta-G solvation = -4192.302075 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.70024 -40.38669 -37.53739 -36.80687 -36.13318 -34.75651 -34.64600 -33.12823 -32.10253 -30.98673 -30.18266 -29.81557 -25.39918 -24.54652 -23.49356 -22.64064 -21.87760 -21.34872 -18.56421 -18.42097 -18.17368 -17.48203 -17.30465 -17.19595 -16.85787 -16.40822 -16.14093 -14.85025 -14.61685 -14.47135 -14.39796 -14.12640 -13.95238 -13.50457 -13.36347 -13.21385 -13.17840 -13.05751 -12.78521 -12.45964 -12.24391 -12.01025 -12.00248 -11.48894 -11.30679 -11.14137 -11.08244 -10.98396 -10.95750 -10.82350 -10.68165 -10.61823 -10.38455 -10.05594 -9.97041 -8.81091 -8.41575 -8.26260 -6.50001 -3.93870 1.07769 1.43346 1.54992 1.69819 1.80611 3.14558 3.17564 3.20841 3.23416 3.60568 4.00893 4.04406 4.09481 4.45946 4.47000 4.48698 4.52677 4.61162 4.77450 4.81909 4.83739 5.08653 5.15264 5.19729 5.30860 5.32868 5.44563 5.46722 5.52421 5.59779 5.76502 5.95272 6.01590 6.16606 6.31980 6.50005 6.57307 6.98654 7.09907 7.30301 7.45464 8.62652 8.76537 9.19134 10.65852 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.015227 B = 0.002856 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.455958 B = 9801.647299 C =10322.413664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.351 6.351 4 C 0.470 3.530 5 O -0.483 6.483 6 C 0.090 3.910 7 H 0.130 0.870 8 C -0.089 4.089 9 C -0.202 4.202 10 C 0.030 3.970 11 C -0.680 4.680 12 S 2.623 3.377 13 O -0.970 6.970 14 O -1.001 7.001 15 N -0.948 5.948 16 C -0.278 4.278 17 H 0.103 0.897 18 C 0.032 3.968 19 N -0.879 5.879 20 Si 0.922 3.078 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.017 3.983 25 C -0.153 4.153 26 C 0.135 3.865 27 O -0.278 6.278 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.139 0.861 36 H 0.411 0.589 37 H 0.275 0.725 38 H 0.149 0.851 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.687 -15.706 4.576 19.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.268 6.268 4 C 0.310 3.690 5 O -0.369 6.369 6 C 0.033 3.967 7 H 0.148 0.852 8 C -0.127 4.127 9 C -0.203 4.203 10 C 0.010 3.990 11 C -0.760 4.760 12 S 2.713 3.287 13 O -0.960 6.960 14 O -0.990 6.990 15 N -0.701 5.701 16 C -0.417 4.417 17 H 0.121 0.879 18 C -0.175 4.175 19 N -0.520 5.520 20 Si 0.748 3.252 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.002 4.002 25 C -0.172 4.172 26 C 0.090 3.910 27 O -0.191 6.191 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.129 0.871 35 H 0.157 0.843 36 H 0.247 0.753 37 H 0.085 0.915 38 H 0.166 0.834 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.987 -16.413 3.921 19.119 hybrid contribution -0.406 -0.082 1.454 1.512 sum -9.393 -16.495 5.375 19.728 Atomic orbital electron populations 1.21823 0.92139 1.03201 1.03828 1.23131 0.95609 0.79447 1.02958 1.86469 1.23180 1.33138 1.84033 1.22972 0.81224 0.91407 0.73365 1.90722 1.60382 1.42361 1.43397 1.22646 0.81324 0.91046 1.01717 0.85249 1.21629 0.97737 0.98690 0.94601 1.20613 0.96217 1.01792 1.01701 1.19962 0.94519 0.90635 0.93846 1.32101 1.01271 1.23202 1.19420 1.05925 0.74689 0.72656 0.75469 1.93480 1.29338 1.86604 1.86617 1.93420 1.67315 1.86763 1.51520 1.51701 1.50155 1.28958 1.39243 1.19251 1.13939 1.06519 1.02017 0.87885 1.25229 0.96754 0.96657 0.98894 1.69677 1.29344 1.13210 1.39766 0.86067 0.79772 0.78140 0.81240 1.19484 1.20743 1.19737 1.20730 0.98538 0.91451 0.89505 1.20347 0.94402 0.98746 1.03717 1.19648 0.94806 0.86495 0.90080 1.86883 1.17938 1.45354 1.68964 0.91275 0.91202 0.89990 0.90908 0.90932 0.88774 0.87133 0.84279 0.75307 0.91517 0.83368 0.84832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.29 37.16 0.38 -0.37 16 2 C 0.06 0.47 6.19 37.16 0.23 0.69 16 3 O -0.35 -3.41 10.22 -39.25 -0.40 -3.82 16 4 C 0.47 5.63 7.25 36.01 0.26 5.89 16 5 O -0.48 -7.32 16.32 -25.24 -0.41 -7.73 16 6 C 0.09 1.06 4.16 -26.99 -0.11 0.95 16 7 H 0.13 1.18 8.14 -51.93 -0.42 0.75 16 8 C -0.09 -1.02 6.64 -26.52 -0.18 -1.20 16 9 C -0.20 -3.08 6.27 -104.10 -0.65 -3.74 16 10 C 0.03 0.50 9.51 -39.72 -0.38 0.12 16 11 C -0.68 -12.75 5.90 -39.53 -0.23 -12.98 16 12 S 2.62 55.77 5.70 -107.50 -0.61 55.15 16 13 O -0.97 -22.68 16.99 -57.17 -0.97 -23.65 16 14 O -1.00 -22.57 17.30 -57.17 -0.99 -23.56 16 15 N -0.95 -21.91 5.75 31.50 0.18 -21.73 16 16 C -0.28 -6.74 9.63 -15.06 -0.15 -6.88 16 17 H 0.10 2.35 7.82 -52.49 -0.41 1.93 16 18 C 0.03 0.79 5.50 -17.43 -0.10 0.70 16 19 N -0.88 -22.64 13.06 55.49 0.72 -21.91 16 20 Si 0.92 19.10 29.55 -169.99 -5.02 14.08 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 22 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 C 0.02 0.29 9.50 -39.68 -0.38 -0.09 16 25 C -0.15 -2.42 10.06 -39.30 -0.40 -2.82 16 26 C 0.13 2.15 7.04 -38.96 -0.27 1.87 16 27 O -0.28 -4.20 10.39 -39.26 -0.41 -4.61 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 32 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 33 H 0.09 1.00 7.92 -51.93 -0.41 0.59 16 34 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.14 2.18 7.63 -52.49 -0.40 1.78 16 36 H 0.41 9.66 8.02 -34.47 -0.28 9.38 16 37 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 38 H 0.15 2.41 7.62 -52.48 -0.40 2.01 16 39 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 356.91 15.07 5.38 5.38 Total: -1.00 -32.38 356.91 -8.92 -41.29 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -4.41 Total: 8.95 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -1.97 Total: -17.84 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: 0.91 Total: -43.64 kcal Atomic # 8 Polarization: -60.18 SS G_CDS: -3.18 Total: -63.37 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.08 kcal Atomic # 16 Polarization: 55.77 SS G_CDS: -0.61 Total: 55.15 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.38 -8.92 -41.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269668597.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.247 kcal (2) G-P(sol) polarization free energy of solvation -32.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds