Wall clock time and date at job start Tue Mar 31 2020 23:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38422 * 122.54138 * 2 1 4 4 C 1.33383 * 114.92120 * 180.02562 * 3 2 1 5 5 S 1.76204 * 125.20498 * 179.97438 * 4 3 2 6 6 O 1.42104 * 106.39598 * 336.45300 * 5 4 3 7 7 O 1.42098 * 106.40117 * 203.53888 * 5 4 3 8 8 N 1.65594 * 107.22039 * 89.99323 * 5 4 3 9 9 C 1.39989 * 119.99656 * 65.00173 * 8 5 4 10 10 C 1.40432 * 125.97226 * 180.02562 * 9 8 5 11 11 C 1.35251 * 107.86019 * 179.70499 * 10 9 8 12 12 N 1.34962 * 107.86128 * 0.42675 * 11 10 9 13 13 C 1.46500 * 125.97410 * 179.83595 * 12 11 10 14 14 C 1.50706 * 109.47299 * 124.71196 * 13 12 11 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 N 1.31219 * 125.97824 * 359.97438 * 9 8 5 23 23 S 1.75887 * 109.59752 * 0.24118 * 4 3 2 24 24 C 1.33397 * 122.53866 * 180.02562 * 2 1 3 25 25 C 1.50697 * 125.20008 * 359.95081 * 24 2 1 26 26 H 1.09008 * 109.46875 * 89.97594 * 1 2 3 27 27 H 1.08994 * 109.47241 * 209.97469 * 1 2 3 28 28 H 1.08994 * 109.47177 * 329.97909 * 1 2 3 29 29 H 1.08000 * 122.53440 * 359.97438 * 3 2 1 30 30 H 0.96996 * 120.00453 * 245.00506 * 8 5 4 31 31 H 1.07997 * 126.07138 * 0.02562 * 10 9 8 32 32 H 1.07992 * 126.07316 * 180.25997 * 11 10 9 33 33 H 1.09004 * 109.47078 * 4.71958 * 13 12 11 34 34 H 1.08993 * 109.47364 * 244.71729 * 13 12 11 35 35 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 36 36 H 1.09009 * 109.47384 * 89.99806 * 25 24 2 37 37 H 1.09008 * 109.46766 * 209.99526 * 25 24 2 38 38 H 1.08993 * 109.47572 * 329.99520 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5736 0.9900 -0.0005 5 16 4.7714 2.2824 -0.0013 6 8 4.1272 3.4260 -0.5459 7 8 5.9605 1.7270 -0.5461 8 7 5.1052 2.6424 1.5802 9 6 5.7196 1.6887 2.4004 10 6 6.0577 1.8588 3.7527 11 6 6.6248 0.7100 4.1862 12 7 6.6555 -0.1534 3.1494 13 6 7.1917 -1.5164 3.1801 14 6 6.1324 -2.4835 2.7176 15 1 5.1575 -2.1192 2.4292 16 6 6.4079 -3.8333 2.6626 17 7 7.5968 -4.2764 3.0087 18 14 5.0951 -5.0320 2.0886 19 1 5.6405 -6.4130 2.1141 20 1 3.9189 -4.9474 2.9913 21 1 4.6823 -4.6883 0.7042 22 7 6.0793 0.4792 2.0404 23 16 3.9386 -0.7305 -0.0081 24 6 2.2245 -1.1246 -0.0005 25 6 1.6536 -2.5192 -0.0001 26 1 -0.3633 0.0004 -1.0278 27 1 -0.3633 -0.8902 0.5134 28 1 -0.3633 0.8897 0.5141 29 1 1.7965 2.1463 -0.0004 30 1 4.8750 3.5139 1.9382 31 1 5.8897 2.7473 4.3433 32 1 6.9907 0.5185 5.1840 33 1 7.4918 -1.7659 4.1978 34 1 8.0564 -1.5817 2.5199 35 1 8.2786 -3.6541 3.3065 36 1 1.5152 -2.8556 -1.0277 37 1 2.3401 -3.1926 0.5133 38 1 0.6928 -2.5184 0.5145 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271403613.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:34 Heat of formation + Delta-G solvation = 30.114247 kcal Electronic energy + Delta-G solvation = -25581.929993 eV Core-core repulsion = 21872.854134 eV Total energy + Delta-G solvation = -3709.075859 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.62489 -38.43217 -37.06464 -35.75807 -35.33803 -33.63569 -32.32659 -30.71478 -29.57627 -29.53428 -26.30767 -25.70110 -23.22932 -22.95489 -21.04595 -20.78702 -19.21172 -18.33876 -17.77844 -17.38765 -17.12834 -16.88963 -16.07027 -15.37606 -14.77715 -14.45222 -14.42747 -14.01145 -13.87040 -13.43223 -13.38432 -13.09277 -12.90756 -12.67835 -12.56675 -12.12739 -12.06277 -11.97087 -11.96388 -11.88113 -11.81216 -11.69051 -11.36241 -11.16121 -10.97603 -10.79651 -10.37380 -10.22717 -10.01003 -9.12378 -8.77479 -8.63893 -8.47694 -8.06253 -7.73218 -6.62037 -4.35910 0.35977 0.76819 1.74325 2.10527 2.48511 2.55349 2.81574 3.22465 3.26693 3.28155 3.46622 3.51800 3.83457 4.32615 4.65569 4.79225 4.92133 5.08005 5.13692 5.19191 5.30347 5.38496 5.45753 5.51283 5.59504 5.80079 5.84163 5.92388 5.98535 6.04235 6.17624 6.31743 6.41695 6.53199 6.65211 6.90044 7.21558 7.59552 7.70062 8.29029 8.32682 8.55683 9.31456 10.75535 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.009612 B = 0.006345 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.241488 B = 4411.868166 C = 6505.079192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.149 4.149 3 C 0.003 3.997 4 C -0.806 4.806 5 S 2.721 3.279 6 O -0.958 6.958 7 O -0.928 6.928 8 N -1.013 6.013 9 C 0.275 3.725 10 C -0.302 4.302 11 C 0.068 3.932 12 N -0.310 5.310 13 C 0.247 3.753 14 C -0.605 4.605 15 H 0.069 0.931 16 C 0.026 3.974 17 N -0.904 5.904 18 Si 1.061 2.939 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.283 1.283 22 N -0.297 5.297 23 S 0.319 5.681 24 C -0.167 4.167 25 C -0.093 4.093 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.146 0.854 30 H 0.431 0.569 31 H 0.142 0.858 32 H 0.171 0.829 33 H 0.047 0.953 34 H 0.038 0.962 35 H 0.268 0.732 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.262 9.608 -1.545 14.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.162 4.162 3 C -0.034 4.034 4 C -1.010 5.010 5 S 2.809 3.191 6 O -0.948 6.948 7 O -0.917 6.917 8 N -0.767 5.767 9 C 0.019 3.981 10 C -0.336 4.336 11 C -0.083 4.083 12 N -0.090 5.090 13 C 0.129 3.871 14 C -0.643 4.643 15 H 0.087 0.913 16 C -0.179 4.179 17 N -0.539 5.539 18 Si 0.888 3.112 19 H -0.203 1.203 20 H -0.211 1.211 21 H -0.209 1.209 22 N -0.127 5.127 23 S 0.590 5.410 24 C -0.288 4.288 25 C -0.151 4.151 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.164 0.836 30 H 0.267 0.733 31 H 0.159 0.841 32 H 0.188 0.812 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.621 6.349 -3.625 12.083 hybrid contribution -1.518 3.081 1.665 3.817 sum -11.139 9.429 -1.960 14.725 Atomic orbital electron populations 1.20476 0.89750 1.02613 1.02041 1.18860 0.97486 0.91485 1.08344 1.19628 0.90469 0.99696 0.93597 1.35507 1.15653 1.19771 1.30033 1.01178 0.73435 0.72790 0.71708 1.93585 1.77430 1.48384 1.75410 1.93649 1.44049 1.79190 1.74860 1.52594 1.71839 1.21749 1.30482 1.18700 0.98767 0.89723 0.90904 1.20843 1.17382 1.01255 0.94087 1.22430 1.00896 0.90156 0.94845 1.48804 1.42567 1.12963 1.04683 1.19841 0.95684 0.73145 0.98432 1.22100 0.99955 0.92870 1.49422 0.91298 1.25770 1.00347 0.97096 0.94714 1.70835 1.03674 1.38724 1.40710 0.83648 0.74642 0.76228 0.76632 1.20283 1.21053 1.20870 1.77446 1.20305 1.04542 1.10453 1.85358 0.99436 0.92140 1.64048 1.25271 0.99671 0.99707 1.04117 1.20497 1.01412 0.90118 1.03102 0.91466 0.91504 0.91652 0.83632 0.73291 0.84060 0.81184 0.93491 0.94401 0.92139 0.90128 0.90551 0.90159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.91 9.87 36.01 0.36 -0.55 16 2 C -0.15 -2.09 5.80 -106.25 -0.62 -2.71 16 3 C 0.00 0.05 9.64 -41.21 -0.40 -0.35 16 4 C -0.81 -13.81 6.51 29.04 0.19 -13.62 16 5 S 2.72 46.63 5.64 -107.50 -0.61 46.02 16 6 O -0.96 -16.25 17.80 -57.17 -1.02 -17.27 16 7 O -0.93 -19.30 17.12 -57.17 -0.98 -20.28 16 8 N -1.01 -15.47 5.91 31.39 0.19 -15.28 16 9 C 0.28 5.08 7.72 -154.55 -1.19 3.89 16 10 C -0.30 -4.90 10.83 -39.82 -0.43 -5.33 16 11 C 0.07 1.18 11.44 -17.24 -0.20 0.98 16 12 N -0.31 -6.68 3.67 -62.56 -0.23 -6.91 16 13 C 0.25 5.86 5.57 -5.19 -0.03 5.83 16 14 C -0.61 -15.81 9.24 -34.44 -0.32 -16.12 16 15 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 16 C 0.03 0.69 5.46 -17.82 -0.10 0.59 16 17 N -0.90 -25.34 13.65 55.43 0.76 -24.58 16 18 Si 1.06 23.58 29.90 -169.99 -5.08 18.50 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 22 N -0.30 -6.51 10.68 31.41 0.34 -6.17 16 23 S 0.32 6.02 22.42 -107.50 -2.41 3.61 16 24 C -0.17 -2.57 6.51 -36.00 -0.23 -2.81 16 25 C -0.09 -1.17 10.05 36.00 0.36 -0.81 16 26 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 27 H 0.07 0.61 6.60 -51.93 -0.34 0.27 16 28 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 29 H 0.15 1.76 8.05 -52.49 -0.42 1.34 16 30 H 0.43 4.76 8.95 -34.47 -0.31 4.45 16 31 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 32 H 0.17 2.29 8.06 -52.49 -0.42 1.87 16 33 H 0.05 1.07 7.94 -51.93 -0.41 0.65 16 34 H 0.04 0.96 8.00 -51.93 -0.42 0.54 16 35 H 0.27 7.35 7.22 -40.82 -0.29 7.05 16 36 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 37 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 38 H 0.08 0.83 6.64 -51.93 -0.34 0.48 16 LS Contribution 356.63 15.07 5.37 5.37 Total: -1.00 -33.49 356.63 -10.56 -44.05 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -4.28 Total: 3.94 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: -2.61 Total: -31.01 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: 1.05 Total: -52.94 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -2.00 Total: -37.54 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -5.08 Total: 18.50 kcal Atomic # 16 Polarization: 52.64 SS G_CDS: -3.02 Total: 49.63 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.49 -10.56 -44.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271403613.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.164 kcal (2) G-P(sol) polarization free energy of solvation -33.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds