Wall clock time and date at job start Tue Mar 31 2020 23:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00431 * 2 1 4 4 H 1.48499 * 109.46985 * 240.00265 * 3 2 1 5 5 H 1.48501 * 109.46923 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47269 * 119.99646 * 3 2 1 7 7 C 1.37877 * 119.99491 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00309 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00325 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47607 * 180.02562 * 9 7 2 11 11 C 1.46505 * 120.00080 * 84.99862 * 10 9 7 12 12 C 1.50703 * 109.47064 * 275.00439 * 11 10 9 13 13 C 1.34515 * 125.79060 * 89.99944 * 12 11 10 14 14 C 1.41380 * 106.83832 * 179.97438 * 13 12 11 15 15 C 1.34506 * 106.84493 * 359.97438 * 14 13 12 16 16 O 1.34306 * 125.78568 * 269.69282 * 12 11 10 17 17 S 1.65596 * 120.00265 * 265.00283 * 10 9 7 18 18 O 1.42101 * 104.27728 * 26.06466 * 17 10 9 19 19 O 1.42101 * 104.28108 * 153.92463 * 17 10 9 20 20 C 1.81403 * 104.45087 * 269.99629 * 17 10 9 21 21 C 1.52992 * 109.47390 * 179.97438 * 20 17 10 22 22 C 1.53004 * 109.47498 * 179.97438 * 21 20 17 23 23 F 1.39902 * 109.46617 * 59.99789 * 22 21 20 24 24 F 1.39896 * 109.47587 * 179.97438 * 22 21 20 25 25 F 1.39893 * 109.47112 * 300.00558 * 22 21 20 26 26 H 0.97007 * 119.99732 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47463 * 59.99799 * 9 7 2 28 28 H 1.09004 * 109.47217 * 300.00558 * 9 7 2 29 29 H 1.09002 * 109.47068 * 35.00407 * 11 10 9 30 30 H 1.09001 * 109.47372 * 155.00495 * 11 10 9 31 31 H 1.07996 * 126.58016 * 0.03378 * 13 12 11 32 32 H 1.08006 * 126.57610 * 179.97438 * 14 13 12 33 33 H 1.08005 * 125.79499 * 180.02562 * 15 14 13 34 34 H 1.09000 * 109.47162 * 299.99966 * 20 17 10 35 35 H 1.09000 * 109.47109 * 59.99791 * 20 17 10 36 36 H 1.09000 * 109.47252 * 300.00292 * 21 20 17 37 37 H 1.09007 * 109.47178 * 59.99755 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1943 0.0001 9 6 1.2509 -2.4992 0.0017 10 7 2.2027 -3.6127 0.0027 11 6 2.7628 -4.0966 1.2671 12 6 3.9610 -3.2613 1.6380 13 6 3.9388 -2.1400 2.3808 14 6 5.2746 -1.6875 2.4793 15 6 6.0333 -2.5596 1.7915 16 8 5.2329 -3.5134 1.2879 17 16 2.6458 -4.3246 -1.4253 18 8 2.4607 -3.3049 -2.3975 19 8 3.9349 -4.8623 -1.1638 20 6 1.4367 -5.6562 -1.6616 21 6 1.7427 -6.3977 -2.9644 22 6 0.7233 -7.5212 -3.1633 23 9 -0.5639 -6.9768 -3.2277 24 9 1.0027 -8.1988 -4.3549 25 9 0.7985 -8.4146 -2.0895 26 1 -0.4850 0.8401 -0.0004 27 1 0.6239 -2.5575 -0.8879 28 1 0.6245 -2.5563 0.8919 29 1 2.0095 -4.0197 2.0511 30 1 3.0661 -5.1376 1.1554 31 1 3.0679 -1.6752 2.8186 32 1 5.6197 -0.8100 3.0060 33 1 7.1049 -2.5045 1.6682 34 1 1.4946 -6.3522 -0.8247 35 1 0.4341 -5.2317 -1.7124 36 1 1.6845 -5.7014 -3.8010 37 1 2.7455 -6.8221 -2.9140 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283769705.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:56 Heat of formation + Delta-G solvation = -204.681290 kcal Electronic energy + Delta-G solvation = -28683.784889 eV Core-core repulsion = 23947.625168 eV Total energy + Delta-G solvation = -4736.159720 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.074 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.29179 -47.79959 -47.74866 -41.90412 -36.70223 -36.07073 -35.44623 -34.30847 -32.59684 -32.30462 -29.91832 -27.33609 -26.87677 -24.83308 -22.86628 -22.33396 -21.10599 -20.04026 -18.92763 -18.76287 -18.22633 -17.89460 -17.02843 -16.77281 -16.53111 -15.89556 -15.71354 -15.30224 -14.98862 -14.66615 -14.52561 -14.26146 -14.19378 -14.06091 -13.90912 -13.88600 -13.48672 -13.12804 -12.84191 -12.41837 -12.33611 -12.21020 -12.13649 -11.99992 -11.94597 -11.63585 -11.60620 -11.20196 -11.13350 -10.77494 -10.68044 -10.52257 -10.08520 -9.83812 -9.21762 -8.46788 -8.35649 -7.83582 -6.06893 -4.07957 0.50037 2.27664 2.54567 3.03049 3.34196 3.35354 3.37724 3.43654 3.56253 3.58036 3.68553 3.79848 4.27297 4.32275 4.44814 4.51379 4.76320 4.92348 5.10858 5.22630 5.25027 5.30783 5.47570 5.62313 5.68838 5.81962 6.11657 6.38963 6.59350 6.66430 7.01865 7.12957 7.24858 7.41647 7.77567 7.92375 8.17684 8.95156 9.56652 11.02217 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.013095 B = 0.004234 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.714545 B = 6611.742127 C = 7988.891566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.064 0.936 9 C 0.252 3.748 10 N -0.978 5.978 11 C 0.216 3.784 12 C -0.026 4.026 13 C -0.167 4.167 14 C -0.219 4.219 15 C -0.055 4.055 16 O -0.166 6.166 17 S 2.606 3.394 18 O -0.925 6.925 19 O -0.953 6.953 20 C -0.660 4.660 21 C -0.157 4.157 22 C 0.462 3.538 23 F -0.178 7.178 24 F -0.183 7.183 25 F -0.181 7.181 26 H 0.263 0.737 27 H 0.041 0.959 28 H 0.039 0.961 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.149 0.851 32 H 0.139 0.861 33 H 0.193 0.807 34 H 0.139 0.861 35 H 0.145 0.855 36 H 0.124 0.876 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.435 -13.516 0.042 13.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.138 4.138 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.554 4.554 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.816 5.816 11 C 0.089 3.911 12 C -0.078 4.078 13 C -0.188 4.188 14 C -0.238 4.238 15 C -0.123 4.123 16 O -0.061 6.061 17 S 2.695 3.305 18 O -0.915 6.915 19 O -0.943 6.943 20 C -0.784 4.784 21 C -0.196 4.196 22 C 0.407 3.593 23 F -0.160 7.160 24 F -0.164 7.164 25 F -0.163 7.163 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.125 0.875 30 H 0.101 0.899 31 H 0.167 0.833 32 H 0.157 0.843 33 H 0.210 0.790 34 H 0.158 0.842 35 H 0.164 0.836 36 H 0.143 0.857 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.984 -13.450 -0.697 14.045 hybrid contribution -0.341 0.848 0.267 0.952 sum 3.643 -12.603 -0.429 13.126 Atomic orbital electron populations 1.69899 1.05912 1.27113 1.50965 1.24861 0.94769 0.99057 0.95150 0.86642 0.79625 0.82894 0.78880 1.20176 1.21376 1.20080 1.21399 0.93762 0.90073 1.50172 0.91812 1.19220 0.86715 0.82358 0.98593 1.57679 1.59154 1.45489 1.19321 1.19409 0.89254 0.94569 0.87870 1.22771 0.83707 1.00193 1.01128 1.21560 0.97590 0.96318 1.03294 1.21787 0.93954 1.02216 1.05853 1.23865 0.96488 0.90894 1.01102 1.84080 1.16957 1.44704 1.60354 1.05356 0.75264 0.75188 0.74710 1.93662 1.86052 1.51868 1.59879 1.93597 1.34688 1.81538 1.84470 1.31001 1.22816 1.20866 1.03697 1.22527 1.00032 0.97081 0.99992 1.20265 0.82010 0.83310 0.73684 1.93207 1.41233 1.85508 1.96036 1.93194 1.93533 1.82049 1.47673 1.93182 1.96328 1.70605 1.56155 0.92738 0.94101 0.94294 0.87480 0.89922 0.83310 0.84275 0.79009 0.84239 0.83643 0.85731 0.85936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.19 13.29 55.43 0.74 -24.46 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.51 -13.54 8.29 -34.44 -0.29 -13.83 16 8 H 0.06 1.75 6.83 -52.48 -0.36 1.39 16 9 C 0.25 5.70 5.03 -5.20 -0.03 5.68 16 10 N -0.98 -17.99 2.72 -116.95 -0.32 -18.31 16 11 C 0.22 3.40 5.81 -5.19 -0.03 3.37 16 12 C -0.03 -0.48 6.21 -35.62 -0.22 -0.70 16 13 C -0.17 -3.11 9.43 -39.70 -0.37 -3.48 16 14 C -0.22 -3.70 10.91 -39.71 -0.43 -4.13 16 15 C -0.05 -0.89 12.09 29.41 0.36 -0.53 16 16 O -0.17 -3.11 10.65 5.68 0.06 -3.05 16 17 S 2.61 44.41 5.32 -107.50 -0.57 43.84 16 18 O -0.92 -19.82 16.99 -57.54 -0.98 -20.80 16 19 O -0.95 -17.48 16.99 -57.54 -0.98 -18.46 16 20 C -0.66 -7.75 5.93 37.15 0.22 -7.53 16 21 C -0.16 -1.63 5.27 -26.73 -0.14 -1.77 16 22 C 0.46 5.02 3.16 37.16 0.12 5.14 16 23 F -0.18 -2.14 16.80 2.25 0.04 -2.11 16 24 F -0.18 -1.99 17.32 2.25 0.04 -1.95 16 25 F -0.18 -2.02 16.80 2.25 0.04 -1.98 16 26 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.04 0.97 7.61 -51.93 -0.40 0.58 16 28 H 0.04 0.88 8.00 -51.93 -0.42 0.46 16 29 H 0.11 1.43 8.00 -51.93 -0.42 1.01 16 30 H 0.08 1.05 7.61 -51.93 -0.40 0.66 16 31 H 0.15 2.77 8.06 -52.49 -0.42 2.35 16 32 H 0.14 2.04 8.06 -52.48 -0.42 1.61 16 33 H 0.19 2.27 8.06 -52.48 -0.42 1.85 16 34 H 0.14 1.30 7.80 -51.92 -0.41 0.90 16 35 H 0.15 1.64 7.80 -51.92 -0.41 1.23 16 36 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 347.72 15.07 5.24 5.24 Total: -1.00 -33.82 347.72 -6.67 -40.48 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -4.04 Total: 1.14 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -0.92 Total: -16.15 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.42 Total: -42.76 kcal Atomic # 8 Polarization: -40.41 SS G_CDS: -1.89 Total: -42.31 kcal Atomic # 9 Polarization: -6.16 SS G_CDS: 0.11 Total: -6.04 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 44.41 SS G_CDS: -0.57 Total: 43.84 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.82 -6.67 -40.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283769705.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.198 kcal (2) G-P(sol) polarization free energy of solvation -33.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds