Wall clock time and date at job start Wed Apr 1 2020 00:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47122 * 2 1 4 4 C 1.50700 * 109.46932 * 239.99751 * 2 1 3 5 5 H 1.08004 * 120.00397 * 239.99863 * 4 2 1 6 6 C 1.37881 * 120.00060 * 60.00129 * 4 2 1 7 7 N 1.31518 * 119.99686 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47246 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46705 * 120.00126 * 8 6 4 11 11 H 1.48499 * 109.47027 * 239.99981 * 8 6 4 12 12 C 1.53006 * 109.46971 * 120.00094 * 2 1 3 13 13 S 1.81396 * 109.46976 * 299.99590 * 12 2 1 14 14 O 1.42104 * 110.54344 * 68.37963 * 13 12 2 15 15 O 1.42092 * 110.54395 * 291.62765 * 13 12 2 16 16 O 1.52202 * 104.44809 * 180.02562 * 13 12 2 17 17 C 1.35956 * 113.99931 * 75.00228 * 16 13 12 18 18 C 1.38864 * 119.96587 * 89.99775 * 17 16 13 19 19 C 1.38086 * 120.25454 * 179.70077 * 18 17 16 20 20 C 1.38611 * 119.98426 * 0.27959 * 19 18 17 21 21 O 1.35644 * 132.91931 * 179.97438 * 20 19 18 22 22 C 1.34206 * 109.17000 * 180.02562 * 21 20 19 23 23 O 1.21602 * 125.27380 * 179.97438 * 22 21 20 24 24 N 1.34770 * 109.45861 * 0.02562 * 22 21 20 25 25 H 0.97006 * 126.24815 * 180.02562 * 24 22 21 26 26 C 1.39458 * 119.82380 * 359.97438 * 20 19 18 27 27 C 1.38566 * 119.96594 * 270.25282 * 17 16 13 28 28 H 1.08997 * 109.47236 * 299.99873 * 1 2 3 29 29 H 1.08999 * 109.47365 * 60.00237 * 1 2 3 30 30 H 1.09003 * 109.47376 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47045 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46807 * 300.00104 * 3 2 1 33 33 H 1.09000 * 109.47299 * 60.00333 * 3 2 1 34 34 H 0.96993 * 119.99455 * 180.02562 * 7 6 4 35 35 H 1.08996 * 109.46595 * 179.97438 * 12 2 1 36 36 H 1.09003 * 109.47216 * 59.99724 * 12 2 1 37 37 H 1.08002 * 119.87498 * 359.97438 * 18 17 16 38 38 H 1.08002 * 120.00657 * 180.30023 * 19 18 17 39 39 H 1.08001 * 120.11071 * 0.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 3.1472 -2.2865 -3.6037 10 1 1.1676 -1.5867 -4.8164 11 1 3.1471 -0.1859 -4.8161 12 6 2.0400 -0.7213 1.2493 13 16 1.4354 0.1339 2.7304 14 8 0.0280 -0.0183 2.8544 15 8 2.0480 1.4100 2.8543 16 8 2.0041 -0.6693 3.8914 17 6 3.3316 -0.4684 4.1051 18 6 3.7512 0.5377 4.9653 19 6 5.0978 0.7431 5.1914 20 6 6.0366 -0.0531 4.5540 21 8 7.3924 -0.0836 4.5803 22 6 7.8270 -1.0608 3.7696 23 8 8.9932 -1.3442 3.5738 24 7 6.7707 -1.6788 3.2050 25 1 6.8065 -2.4194 2.5796 26 6 5.6168 -1.0604 3.6857 27 6 4.2647 -1.2643 3.4601 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6766 1.9562 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.7089 1.1613 -3.4844 35 1 3.1299 -0.7217 1.2490 36 1 1.6766 -1.7490 1.2493 37 1 3.0213 1.1592 5.4629 38 1 5.4196 1.5235 5.8651 39 1 3.9392 -2.0440 2.7874 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295414548.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:43 Heat of formation + Delta-G solvation = -136.666860 kcal Electronic energy + Delta-G solvation = -28443.623587 eV Core-core repulsion = 24252.269934 eV Total energy + Delta-G solvation = -4191.353653 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.55216 -42.04065 -39.45377 -38.36569 -38.20199 -38.04979 -37.09941 -36.41133 -33.65789 -31.85358 -30.35209 -28.49982 -27.66815 -27.24707 -25.24344 -24.69497 -24.19351 -22.33769 -21.34586 -20.05562 -19.64084 -19.09202 -18.69011 -18.54568 -17.90820 -17.64585 -17.04924 -16.94558 -16.69650 -16.26440 -16.06098 -15.39040 -15.05986 -14.76236 -14.70700 -14.47375 -14.44792 -14.19306 -14.01226 -13.90008 -13.72464 -13.19669 -13.04594 -12.93116 -12.80388 -12.75557 -12.53710 -12.26769 -12.22065 -12.17274 -12.12723 -11.95494 -11.55868 -11.37618 -10.61911 -10.40970 -10.10564 -9.55004 -8.02673 -6.20369 -1.07705 -0.26037 -0.18643 0.94617 1.08538 1.18628 1.43210 1.47528 1.55162 1.70207 2.10311 2.43763 2.61700 2.94526 3.01679 3.21228 3.45231 3.60298 3.75385 3.88139 3.94713 4.01152 4.20985 4.39239 4.59524 4.68951 4.82214 4.85652 4.88058 4.93169 4.98781 5.10525 5.21957 5.31096 5.40527 5.53182 5.66911 5.81766 6.00550 6.12668 6.34833 6.46786 6.84603 7.48153 8.97363 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.011651 B = 0.004290 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.680104 B = 6525.465436 C = 8318.930948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.072 3.928 3 C -0.160 4.160 4 C -0.513 4.513 5 H 0.067 0.933 6 C 0.019 3.981 7 N -0.906 5.906 8 Si 0.950 3.050 9 H -0.264 1.264 10 H -0.286 1.286 11 H -0.287 1.287 12 C -0.609 4.609 13 S 2.592 3.408 14 O -0.963 6.963 15 O -0.966 6.966 16 O -0.660 6.660 17 C 0.070 3.930 18 C -0.082 4.082 19 C -0.045 4.045 20 C 0.041 3.959 21 O -0.235 6.235 22 C 0.642 3.358 23 O -0.517 6.517 24 N -0.625 5.625 25 H 0.460 0.540 26 C 0.084 3.916 27 C -0.110 4.110 28 H 0.033 0.967 29 H 0.072 0.928 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.037 0.963 34 H 0.260 0.740 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.176 0.824 38 H 0.193 0.807 39 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.740 -3.815 15.331 17.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.070 3.930 3 C -0.218 4.218 4 C -0.552 4.552 5 H 0.085 0.915 6 C -0.180 4.180 7 N -0.545 5.545 8 Si 0.777 3.223 9 H -0.188 1.188 10 H -0.213 1.213 11 H -0.213 1.213 12 C -0.740 4.740 13 S 2.692 3.308 14 O -0.961 6.961 15 O -0.964 6.964 16 O -0.619 6.619 17 C 0.027 3.973 18 C -0.103 4.103 19 C -0.063 4.063 20 C -0.007 4.007 21 O -0.140 6.140 22 C 0.396 3.604 23 O -0.402 6.402 24 N -0.284 5.284 25 H 0.307 0.693 26 C -0.016 4.016 27 C -0.133 4.133 28 H 0.052 0.948 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.163 0.837 36 H 0.165 0.835 37 H 0.194 0.806 38 H 0.211 0.789 39 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 8.022 -3.294 15.858 18.074 hybrid contribution 0.148 -1.153 -2.115 2.413 sum 8.169 -4.447 13.743 16.595 Atomic orbital electron populations 1.22250 0.97788 1.00683 1.01464 1.17898 0.92289 0.92323 0.90442 1.22207 0.99945 0.98045 1.01608 1.21307 1.31491 1.12246 0.90121 0.91511 1.25622 0.95250 0.95617 1.01530 1.69941 1.37225 1.23651 1.23713 0.85627 0.77975 0.78772 0.79948 1.18827 1.21256 1.21285 1.30743 1.13193 1.14200 1.15830 1.05582 0.74573 0.74896 0.75710 1.93561 1.30935 1.86346 1.85251 1.93568 1.77222 1.41149 1.84478 1.85783 1.29684 1.79420 1.67002 1.17873 0.77140 0.99657 1.02626 1.21441 0.96579 0.95672 0.96609 1.20220 0.87818 0.98850 0.99409 1.19421 0.80677 0.99446 1.01137 1.85023 1.20509 1.49722 1.58757 1.18450 0.85325 0.78411 0.78235 1.91196 1.15618 1.67640 1.65703 1.43478 1.03384 1.35981 1.45527 0.69314 1.17916 0.88652 0.96198 0.98820 1.20293 0.88222 1.02158 1.02578 0.94847 0.90942 0.93969 0.93886 0.91197 0.94383 0.93009 0.83668 0.83498 0.80641 0.78939 0.80345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.65 7.77 71.98 0.56 -7.10 16 2 C 0.07 3.20 0.52 -52.93 -0.03 3.18 16 3 C -0.16 -7.29 7.77 71.98 0.56 -6.73 16 4 C -0.51 -24.76 8.01 25.60 0.21 -24.55 16 5 H 0.07 3.05 7.74 -2.91 -0.02 3.03 16 6 C 0.02 0.97 5.15 84.65 0.44 1.41 16 7 N -0.91 -48.12 9.35 21.45 0.20 -47.92 16 8 Si 0.95 40.35 29.54 68.60 2.03 42.38 16 9 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 10 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 12 C -0.61 -20.23 4.39 71.98 0.32 -19.91 16 13 S 2.59 85.43 4.20 -56.49 -0.24 85.19 16 14 O -0.96 -38.15 15.71 -118.57 -1.86 -40.01 16 15 O -0.97 -33.64 13.88 -118.57 -1.65 -35.29 16 16 O -0.66 -17.11 10.05 -62.14 -0.62 -17.73 16 17 C 0.07 1.50 4.80 22.50 0.11 1.60 16 18 C -0.08 -1.43 9.03 22.38 0.20 -1.23 16 19 C -0.04 -0.62 10.06 22.32 0.22 -0.39 16 20 C 0.04 0.72 7.35 22.65 0.17 0.89 16 21 O -0.24 -4.87 10.72 7.82 0.08 -4.78 16 22 C 0.64 14.17 9.44 129.79 1.23 15.39 16 23 O -0.52 -14.67 18.05 19.18 0.35 -14.33 16 24 N -0.62 -10.07 6.22 -430.08 -2.68 -12.74 16 25 H 0.46 4.80 8.96 -92.70 -0.83 3.97 16 26 C 0.08 1.46 7.25 38.31 0.28 1.74 16 27 C -0.11 -1.95 8.47 22.43 0.19 -1.76 16 28 H 0.03 1.48 5.46 -2.39 -0.01 1.46 16 29 H 0.07 3.74 6.07 -2.39 -0.01 3.72 16 30 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.07 3.56 6.07 -2.39 -0.01 3.55 16 33 H 0.04 1.62 5.46 -2.39 -0.01 1.60 16 34 H 0.26 13.31 8.31 -92.71 -0.77 12.54 16 35 H 0.15 4.01 6.58 -2.39 -0.02 3.99 16 36 H 0.15 4.21 8.14 -2.39 -0.02 4.19 16 37 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 38 H 0.19 1.27 8.06 -2.91 -0.02 1.25 16 39 H 0.18 2.31 7.46 -2.91 -0.02 2.29 16 Total: -1.00 -68.39 331.72 0.35 -68.04 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.30 Total: 14.66 kcal Atomic # 6 Polarization: -41.91 SS G_CDS: 4.44 Total: -37.47 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: -2.48 Total: -60.66 kcal Atomic # 8 Polarization: -108.44 SS G_CDS: -3.70 Total: -112.14 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Atomic # 16 Polarization: 85.43 SS G_CDS: -0.24 Total: 85.19 kcal Total: -68.39 0.35 -68.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295414548.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.626 kcal (2) G-P(sol) polarization free energy of solvation -68.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds