Wall clock time and date at job start Wed Apr 1 2020 00:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31407 * 122.23570 * 2 1 4 4 C 1.30054 * 117.16665 * 179.97438 * 3 2 1 5 5 N 1.38489 * 125.36453 * 179.97438 * 4 3 2 6 6 C 1.34775 * 119.99680 * 179.97438 * 5 4 3 7 7 O 1.21433 * 120.00517 * 0.02562 * 6 5 4 8 8 C 1.49144 * 119.99764 * 179.97438 * 6 5 4 9 9 O 1.21393 * 120.00217 * 0.02562 * 8 6 5 10 10 N 1.34777 * 119.99903 * 179.72511 * 8 6 5 11 11 C 1.46499 * 120.00199 * 180.27454 * 10 8 6 12 12 C 1.52997 * 109.47555 * 180.02562 * 11 10 8 13 13 C 1.52993 * 117.50340 * 243.62675 * 12 11 10 14 14 C 1.52994 * 117.50169 * 174.99876 * 12 11 10 15 15 S 1.76140 * 109.26966 * 0.25953 * 4 3 2 16 16 C 1.34844 * 122.23135 * 179.97438 * 2 1 3 17 17 S 1.76197 * 125.93879 * 0.02562 * 16 2 1 18 18 C 1.76197 * 99.99955 * 179.97438 * 17 16 2 19 19 H 1.07997 * 120.00366 * 0.02562 * 18 17 16 20 20 C 1.38537 * 120.00032 * 179.97438 * 18 17 16 21 21 N 1.31733 * 120.00054 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00012 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47131 * 89.99690 * 22 20 18 24 24 H 1.48502 * 109.47258 * 209.99804 * 22 20 18 25 25 H 1.48501 * 109.46787 * 329.99592 * 22 20 18 26 26 H 1.08996 * 109.47398 * 90.02425 * 1 2 3 27 27 H 1.09006 * 109.46980 * 210.02892 * 1 2 3 28 28 H 1.08997 * 109.46893 * 330.02404 * 1 2 3 29 29 H 0.97001 * 120.00393 * 0.02562 * 5 4 3 30 30 H 0.97000 * 120.00317 * 0.28358 * 10 8 6 31 31 H 1.08998 * 109.47134 * 300.00670 * 11 10 8 32 32 H 1.08997 * 109.46691 * 60.00285 * 11 10 8 33 33 H 1.09009 * 115.54534 * 29.33380 * 12 11 10 34 34 H 1.09001 * 117.50006 * 359.97438 * 13 12 11 35 35 H 1.08997 * 117.50291 * 145.02211 * 13 12 11 36 36 H 1.09000 * 117.50187 * 214.97948 * 14 12 11 37 37 H 1.09005 * 117.49938 * 0.02562 * 14 12 11 38 38 H 0.97006 * 119.99890 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2079 1.1115 0.0000 4 6 3.5034 0.9966 0.0005 5 7 4.4016 2.0507 0.0001 6 6 5.7270 1.8066 0.0012 7 8 6.1337 0.6624 0.0022 8 6 6.6943 2.9418 0.0002 9 8 6.2879 4.0856 -0.0012 10 7 8.0198 2.6977 0.0070 11 6 8.9700 3.8127 0.0120 12 6 10.3987 3.2654 0.0186 13 6 11.2683 3.5750 1.2387 14 6 11.5426 4.2752 -0.0938 15 16 3.9355 -0.7109 -0.0064 16 6 2.2262 -1.1406 0.0005 17 16 1.5710 -2.7763 0.0006 18 6 3.0680 -3.7055 0.0006 19 1 4.0201 -3.1957 0.0009 20 6 3.0238 -5.0902 0.0012 21 7 4.1430 -5.7849 0.0017 22 14 1.3770 -5.9721 0.0013 23 1 0.9409 -6.2063 -1.3987 24 1 1.5129 -7.2744 0.7019 25 1 0.3682 -5.1366 0.7009 26 1 -0.3634 -0.0004 -1.0276 27 1 -0.3633 -0.8898 0.5143 28 1 -0.3633 0.8902 0.5135 29 1 4.0768 2.9647 -0.0003 30 1 8.3447 1.7837 0.0083 31 1 8.8190 4.4228 -0.8786 32 1 8.8100 4.4223 0.9013 33 1 10.5332 2.2968 -0.4631 34 1 10.8227 4.1690 2.0366 35 1 11.9752 2.8101 1.5601 36 1 12.4299 3.9708 -0.6489 37 1 11.2774 5.3295 -0.1720 38 1 4.1120 -6.7545 0.0017 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336947819.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:23 Heat of formation + Delta-G solvation = -24.012977 kcal Electronic energy + Delta-G solvation = -23435.859216 eV Core-core repulsion = 19724.436224 eV Total energy + Delta-G solvation = -3711.422992 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.23687 -40.62076 -39.90773 -38.50719 -36.64702 -35.25004 -34.83169 -32.19143 -29.23792 -28.79560 -27.91060 -26.60280 -23.95466 -23.23748 -22.46350 -22.12938 -21.21742 -20.18094 -19.37602 -18.89971 -18.07764 -17.54946 -17.41042 -17.26026 -17.16529 -16.35472 -16.15026 -15.71188 -15.45193 -15.11339 -15.01069 -14.78118 -14.52769 -14.18065 -13.61424 -13.51767 -13.46712 -13.21915 -13.18397 -13.09381 -12.45490 -12.36658 -12.26805 -12.20187 -11.94322 -11.48935 -11.33309 -11.24621 -11.16116 -10.87277 -10.67912 -10.61238 -10.34830 -9.67798 -8.62170 -8.56959 -6.34929 -0.56929 0.04451 0.17226 0.63222 0.89402 1.02844 1.29986 1.39946 1.58145 1.61935 2.01410 2.14040 2.21249 2.49846 2.77374 2.84247 3.11192 3.59925 3.61511 3.95850 4.06472 4.21845 4.32555 4.51379 4.55722 4.64816 4.81935 4.85410 4.87292 4.93136 4.93408 5.04263 5.24807 5.26718 5.37759 5.44865 5.60317 5.98077 6.07559 6.31383 6.61915 6.72862 6.76219 8.50179 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.015633 B = 0.002624 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.603944 B =10666.916310 C =12365.248294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.052 3.948 3 N -0.477 5.477 4 C 0.215 3.785 5 N -0.577 5.577 6 C 0.501 3.499 7 O -0.504 6.504 8 C 0.531 3.469 9 O -0.528 6.528 10 N -0.680 5.680 11 C 0.149 3.851 12 C -0.182 4.182 13 C -0.179 4.179 14 C -0.161 4.161 15 S 0.187 5.813 16 C -0.271 4.271 17 S 0.071 5.929 18 C -0.569 4.569 19 H 0.071 0.929 20 C 0.051 3.949 21 N -0.904 5.904 22 Si 0.911 3.089 23 H -0.253 1.253 24 H -0.255 1.255 25 H -0.219 1.219 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.440 0.560 30 H 0.422 0.578 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.858 18.504 0.349 20.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.091 4.091 3 N -0.199 5.199 4 C -0.156 4.156 5 N -0.229 5.229 6 C 0.281 3.719 7 O -0.377 6.377 8 C 0.310 3.690 9 O -0.405 6.405 10 N -0.333 5.333 11 C 0.027 3.973 12 C -0.200 4.200 13 C -0.216 4.216 14 C -0.198 4.198 15 S 0.433 5.567 16 C -0.506 4.506 17 S 0.317 5.683 18 C -0.718 4.718 19 H 0.089 0.911 20 C -0.157 4.157 21 N -0.539 5.539 22 Si 0.730 3.270 23 H -0.177 1.177 24 H -0.178 1.178 25 H -0.142 1.142 26 H 0.103 0.897 27 H 0.094 0.906 28 H 0.106 0.894 29 H 0.282 0.718 30 H 0.260 0.740 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.135 0.865 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.651 17.791 0.347 19.369 hybrid contribution 0.445 -0.355 -0.025 0.570 sum 8.095 17.435 0.321 19.226 Atomic orbital electron populations 1.20340 0.84922 1.03644 1.03615 1.19847 0.98729 0.83713 1.06765 1.66006 1.02521 1.31694 1.19685 1.24029 0.90334 0.92887 1.08345 1.41979 1.03596 1.09066 1.68282 1.20760 0.82834 0.90420 0.77874 1.90820 1.77354 1.22967 1.46589 1.18999 0.83888 0.87204 0.78887 1.90811 1.78730 1.21713 1.49218 1.45770 1.03815 1.12917 1.70798 1.21212 0.85356 0.87388 1.03365 1.22418 0.90395 1.01955 1.05274 1.23192 1.02807 1.03835 0.91766 1.23064 0.98537 0.98119 1.00083 1.86325 1.02031 0.96470 1.71842 1.28247 1.01464 1.04722 1.16176 1.81967 1.10778 0.89042 1.86539 1.22876 0.93299 0.95405 1.60177 0.91075 1.25697 1.01217 0.96873 0.91864 1.70072 1.29044 1.08335 1.46433 0.85936 0.79403 0.80570 0.81053 1.17675 1.17848 1.14223 0.89724 0.90582 0.89372 0.71755 0.74048 0.89867 0.90227 0.86453 0.88238 0.88030 0.87447 0.87648 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.96 10.03 71.24 0.71 -1.25 16 2 C 0.05 1.98 6.73 41.84 0.28 2.26 16 3 N -0.48 -17.76 10.55 -185.10 -1.95 -19.71 16 4 C 0.22 7.94 8.38 179.26 1.50 9.44 16 5 N -0.58 -16.98 5.38 -311.25 -1.67 -18.66 16 6 C 0.50 14.20 7.84 87.18 0.68 14.89 16 7 O -0.50 -17.08 13.98 -3.51 -0.05 -17.13 16 8 C 0.53 12.22 7.88 87.18 0.69 12.90 16 9 O -0.53 -13.45 16.47 -3.38 -0.06 -13.51 16 10 N -0.68 -11.91 5.55 -464.72 -2.58 -14.49 16 11 C 0.15 1.97 5.96 86.38 0.51 2.49 16 12 C -0.18 -1.88 5.85 -10.80 -0.06 -1.94 16 13 C -0.18 -1.68 10.18 30.59 0.31 -1.36 16 14 C -0.16 -1.30 10.25 30.59 0.31 -0.98 16 15 S 0.19 8.22 18.34 -56.49 -1.04 7.18 16 16 C -0.27 -11.96 6.68 67.04 0.45 -11.51 16 17 S 0.07 3.31 18.72 -56.49 -1.06 2.25 16 18 C -0.57 -32.00 9.81 67.89 0.67 -31.33 16 19 H 0.07 4.37 6.21 -2.91 -0.02 4.35 16 20 C 0.05 2.82 5.49 84.78 0.47 3.29 16 21 N -0.90 -52.94 13.97 21.60 0.30 -52.64 16 22 Si 0.91 39.70 27.73 68.60 1.90 41.60 16 23 H -0.25 -10.61 7.11 99.48 0.71 -9.91 16 24 H -0.25 -10.54 7.11 99.48 0.71 -9.84 16 25 H -0.22 -8.87 6.73 99.48 0.67 -8.20 16 26 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.08 2.23 7.38 -2.38 -0.02 2.21 16 28 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.44 10.81 8.28 -92.71 -0.77 10.04 16 30 H 0.42 6.87 7.87 -92.71 -0.73 6.14 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.06 7.88 -2.39 -0.02 1.04 16 33 H 0.12 1.18 8.04 -2.38 -0.02 1.16 16 34 H 0.10 0.90 8.03 -2.39 -0.02 0.88 16 35 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.28 15.11 8.32 -92.70 -0.77 14.34 16 Total: -1.00 -68.11 357.55 -0.07 -68.17 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -0.39 Total: 20.03 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 6.52 Total: -3.10 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -5.90 Total: -105.50 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -0.10 Total: -30.63 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 1.90 Total: 41.60 kcal Atomic # 16 Polarization: 11.52 SS G_CDS: -2.09 Total: 9.43 kcal Total: -68.11 -0.07 -68.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336947819.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.161 kcal (2) G-P(sol) polarization free energy of solvation -68.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds