Wall clock time and date at job start Tue Mar 31 2020 22:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86801 * 120.00160 * 2 1 4 4 H 1.48504 * 109.47127 * 240.00123 * 3 2 1 5 5 H 1.48497 * 109.47123 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46911 * 120.00245 * 3 2 1 7 7 C 1.38948 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00339 * 179.97438 * 7 2 1 9 9 N 1.37101 * 120.00409 * 359.97438 * 7 2 1 10 10 C 1.34767 * 120.00350 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00360 * 359.97438 * 10 9 7 12 12 C 1.50706 * 120.00126 * 180.02562 * 10 9 7 13 13 N 1.46496 * 109.47009 * 179.97438 * 12 10 9 14 14 C 1.34789 * 119.99582 * 179.97438 * 13 12 10 15 15 O 1.21585 * 119.99795 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99408 * 180.27686 * 14 13 12 17 17 C 1.40201 * 119.99677 * 175.23832 * 16 14 13 18 18 C 1.38808 * 120.00289 * 34.70048 * 17 16 14 19 19 C 1.38469 * 119.99112 * 179.97438 * 18 17 16 20 20 C 1.39303 * 119.91280 * 359.97438 * 19 18 17 21 21 C 1.38530 * 119.95025 * 0.02562 * 20 19 18 22 22 C 1.38297 * 120.10623 * 359.74333 * 21 20 19 23 23 Cl 1.73599 * 119.97639 * 180.27936 * 22 21 20 24 24 O 1.36600 * 108.61095 * 179.97438 * 20 19 18 25 25 C 1.43977 * 105.48150 * 342.70833 * 24 20 19 26 26 O 1.36538 * 131.45163 * 180.02562 * 19 18 17 27 27 H 0.97002 * 120.00358 * 359.97438 * 1 2 3 28 28 H 0.96999 * 119.99616 * 0.02562 * 9 7 2 29 29 H 1.09008 * 109.46767 * 59.99909 * 12 10 9 30 30 H 1.08997 * 109.47001 * 300.00564 * 12 10 9 31 31 H 0.96992 * 120.00365 * 0.02562 * 13 12 10 32 32 H 0.96994 * 120.00454 * 355.24344 * 16 14 13 33 33 H 1.07999 * 120.00459 * 359.97438 * 18 17 16 34 34 H 1.07998 * 119.94599 * 180.02562 * 21 20 19 35 35 H 1.09007 * 110.56751 * 268.58872 * 25 24 20 36 36 H 1.08994 * 110.57506 * 145.71898 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5578 -0.0016 11 8 3.2100 -3.5579 -0.0030 12 6 1.2436 -4.8630 -0.0022 13 7 2.1956 -5.9764 -0.0039 14 6 1.7463 -7.2472 -0.0042 15 8 0.5509 -7.4693 -0.0034 16 7 2.6221 -8.2715 -0.0001 17 6 2.1576 -9.5906 0.1004 18 6 0.9563 -9.9506 -0.4944 19 6 0.4980 -11.2535 -0.3954 20 6 1.2443 -12.2014 0.3010 21 6 2.4429 -11.8388 0.8935 22 6 2.9023 -10.5384 0.7902 23 17 4.4083 -10.0894 1.5278 24 8 0.5843 -13.3964 0.2538 25 6 -0.7665 -13.0746 -0.1267 26 8 -0.6281 -11.8548 -0.8798 27 1 -0.4851 0.8400 0.0004 28 1 0.3533 -2.3907 -0.0005 29 1 0.6166 -4.9201 -0.8920 30 1 0.6173 -4.9213 0.8880 31 1 3.1492 -5.7992 -0.0041 32 1 3.5738 -8.0963 -0.0667 33 1 0.3790 -9.2146 -1.0344 34 1 3.0217 -12.5738 1.4330 35 1 -1.3848 -12.9125 0.7563 36 1 -1.1870 -13.8634 -0.7503 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348228131.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:37 Heat of formation + Delta-G solvation = -94.709088 kcal Electronic energy + Delta-G solvation = -25854.229799 eV Core-core repulsion = 21559.111521 eV Total energy + Delta-G solvation = -4295.118277 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.066 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.50058 -40.61261 -38.69283 -37.99791 -36.65004 -36.55860 -34.62914 -34.54777 -33.78338 -31.43091 -30.70041 -29.55958 -27.49340 -26.06620 -24.60651 -23.61622 -23.03920 -21.02624 -19.72664 -19.08521 -18.70047 -18.27875 -17.98672 -17.56904 -16.94519 -16.00055 -15.77595 -15.61715 -15.13369 -14.90647 -14.74694 -14.61718 -14.30838 -14.21756 -14.02081 -13.72453 -13.62064 -13.48939 -13.26839 -12.37375 -12.26830 -12.13064 -12.03819 -11.66110 -11.38787 -11.22600 -11.12273 -10.53348 -10.35583 -10.22514 -10.05525 -9.66404 -9.07810 -8.87564 -8.68957 -8.14424 -8.05550 -6.54882 -3.97194 0.58385 0.79708 1.60695 2.20872 2.64853 2.94892 3.08639 3.11361 3.19813 3.23444 3.28589 3.69539 4.00769 4.09964 4.17054 4.33107 4.49139 4.55199 4.77279 4.80900 5.10710 5.13519 5.20754 5.44244 5.60905 5.64942 5.80503 5.88983 5.90350 6.00097 6.29176 6.53315 6.71350 6.75799 7.42580 7.87561 7.89662 8.39646 8.45717 9.00704 9.34693 9.82207 10.61776 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.021989 B = 0.002111 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.082430 B =13262.245904 C =14402.003581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.547 5.547 10 C 0.427 3.573 11 O -0.598 6.598 12 C 0.127 3.873 13 N -0.713 5.713 14 C 0.706 3.294 15 O -0.576 6.576 16 N -0.681 5.681 17 C 0.204 3.796 18 C -0.095 4.095 19 C 0.062 3.938 20 C 0.020 3.980 21 C -0.072 4.072 22 C -0.064 4.064 23 Cl -0.046 7.046 24 O -0.306 6.306 25 C 0.213 3.787 26 O -0.302 6.302 27 H 0.275 0.725 28 H 0.396 0.604 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.410 0.590 32 H 0.414 0.586 33 H 0.167 0.833 34 H 0.149 0.851 35 H 0.087 0.913 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.316 -24.711 0.812 24.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.436 4.436 8 H 0.123 0.877 9 N -0.181 5.181 10 C 0.212 3.788 11 O -0.485 6.485 12 C -0.001 4.001 13 N -0.370 5.370 14 C 0.406 3.594 15 O -0.454 6.454 16 N -0.330 5.330 17 C 0.106 3.894 18 C -0.116 4.116 19 C 0.016 3.984 20 C -0.025 4.025 21 C -0.091 4.091 22 C -0.095 4.095 23 Cl -0.018 7.018 24 O -0.223 6.223 25 C 0.101 3.899 26 O -0.218 6.218 27 H 0.085 0.915 28 H 0.230 0.770 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.248 0.752 32 H 0.251 0.749 33 H 0.184 0.816 34 H 0.167 0.833 35 H 0.104 0.896 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.921 -24.692 0.753 24.720 hybrid contribution 0.592 0.911 0.094 1.090 sum 1.513 -23.781 0.846 23.844 Atomic orbital electron populations 1.69601 1.06019 1.28715 1.49030 1.25332 0.95674 0.99969 0.96686 0.85864 0.78785 0.80100 0.79180 1.19746 1.20837 1.19754 1.19680 0.93443 0.81953 1.48485 0.87690 1.41772 1.09514 1.04429 1.62421 1.19689 0.88289 0.84936 0.85866 1.90500 1.13685 1.86781 1.57488 1.20880 0.91071 0.84660 1.03526 1.44762 1.11765 1.02944 1.77509 1.15766 0.84938 0.80579 0.78070 1.90923 1.13613 1.83657 1.57190 1.42565 1.10673 1.02697 1.77060 1.16584 0.93534 0.83300 0.96015 1.20073 0.96822 0.92657 1.02053 1.19569 0.88335 0.93540 0.96934 1.19431 0.96503 0.84207 1.02379 1.19467 0.94458 0.94574 1.00633 1.20115 0.92222 0.94003 1.03120 1.98387 1.29696 1.92528 1.81146 1.87376 1.22777 1.25753 1.86346 1.25695 0.83734 0.85400 0.95055 1.87424 1.42005 1.34800 1.57544 0.91475 0.76980 0.89606 0.89618 0.75167 0.74859 0.81567 0.83289 0.89567 0.84913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.47 13.05 55.50 0.72 -22.75 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.22 29.55 -169.99 -5.02 15.20 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.31 -8.15 9.68 -14.93 -0.14 -8.29 16 8 H 0.11 2.90 7.16 -52.48 -0.38 2.53 16 9 N -0.55 -13.17 5.29 -10.96 -0.06 -13.23 16 10 C 0.43 9.40 7.85 -10.99 -0.09 9.31 16 11 O -0.60 -14.75 15.24 5.55 0.08 -14.66 16 12 C 0.13 2.20 6.15 -5.19 -0.03 2.17 16 13 N -0.71 -11.08 5.53 -66.41 -0.37 -11.44 16 14 C 0.71 10.57 8.41 -86.91 -0.73 9.84 16 15 O -0.58 -10.11 13.76 5.29 0.07 -10.03 16 16 N -0.68 -8.10 5.06 -14.17 -0.07 -8.17 16 17 C 0.20 2.42 6.31 -83.58 -0.53 1.89 16 18 C -0.09 -1.21 8.71 -39.29 -0.34 -1.55 16 19 C 0.06 0.74 7.14 -39.10 -0.28 0.46 16 20 C 0.02 0.22 7.15 -39.08 -0.28 -0.06 16 21 C -0.07 -0.68 9.83 -39.45 -0.39 -1.07 16 22 C -0.06 -0.66 6.33 -39.32 -0.25 -0.91 16 23 Cl -0.05 -0.43 27.93 -51.86 -1.45 -1.88 16 24 O -0.31 -2.98 11.41 -46.02 -0.52 -3.50 16 25 C 0.21 1.56 8.89 101.05 0.90 2.46 16 26 O -0.30 -3.34 11.41 -45.81 -0.52 -3.86 16 27 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.40 9.17 7.90 -40.82 -0.32 8.85 16 29 H 0.09 1.42 8.14 -51.92 -0.42 0.99 16 30 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.41 6.18 7.46 -40.82 -0.30 5.88 16 32 H 0.41 4.01 8.07 -40.82 -0.33 3.68 16 33 H 0.17 2.37 6.19 -52.49 -0.32 2.05 16 34 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.13 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 337.22 15.07 5.08 5.08 Total: -1.00 -31.39 337.22 -7.22 -38.60 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -2.91 Total: 15.82 kcal Atomic # 6 Polarization: 17.08 SS G_CDS: -2.26 Total: 14.82 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: 0.23 Total: -55.59 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -0.89 Total: -32.06 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.45 Total: -1.88 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.39 -7.22 -38.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348228131.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.108 kcal (2) G-P(sol) polarization free energy of solvation -31.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds