Wall clock time and date at job start Tue Mar 31 2020 22:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86801 * 120.00160 * 2 1 4 4 H 1.48504 * 109.47127 * 240.00123 * 3 2 1 5 5 H 1.48497 * 109.47123 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46911 * 120.00245 * 3 2 1 7 7 C 1.38948 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00339 * 179.97438 * 7 2 1 9 9 N 1.37101 * 120.00409 * 359.97438 * 7 2 1 10 10 C 1.34767 * 120.00350 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00360 * 359.97438 * 10 9 7 12 12 C 1.50706 * 120.00126 * 180.02562 * 10 9 7 13 13 N 1.46496 * 109.47009 * 179.97438 * 12 10 9 14 14 C 1.34789 * 119.99582 * 179.97438 * 13 12 10 15 15 O 1.21585 * 119.99795 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99408 * 180.27686 * 14 13 12 17 17 C 1.40201 * 119.99677 * 175.23832 * 16 14 13 18 18 C 1.38808 * 120.00289 * 34.70048 * 17 16 14 19 19 C 1.38469 * 119.99112 * 179.97438 * 18 17 16 20 20 C 1.39303 * 119.91280 * 359.97438 * 19 18 17 21 21 C 1.38530 * 119.95025 * 0.02562 * 20 19 18 22 22 C 1.38297 * 120.10623 * 359.74333 * 21 20 19 23 23 Cl 1.73599 * 119.97639 * 180.27936 * 22 21 20 24 24 O 1.36600 * 108.61095 * 179.97438 * 20 19 18 25 25 C 1.43977 * 105.48150 * 342.70833 * 24 20 19 26 26 O 1.36538 * 131.45163 * 180.02562 * 19 18 17 27 27 H 0.97002 * 120.00358 * 359.97438 * 1 2 3 28 28 H 0.96999 * 119.99616 * 0.02562 * 9 7 2 29 29 H 1.09008 * 109.46767 * 59.99909 * 12 10 9 30 30 H 1.08997 * 109.47001 * 300.00564 * 12 10 9 31 31 H 0.96992 * 120.00365 * 0.02562 * 13 12 10 32 32 H 0.96994 * 120.00454 * 355.24344 * 16 14 13 33 33 H 1.07999 * 120.00459 * 359.97438 * 18 17 16 34 34 H 1.07998 * 119.94599 * 180.02562 * 21 20 19 35 35 H 1.09007 * 110.56751 * 268.58872 * 25 24 20 36 36 H 1.08994 * 110.57506 * 145.71898 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5578 -0.0016 11 8 3.2100 -3.5579 -0.0030 12 6 1.2436 -4.8630 -0.0022 13 7 2.1956 -5.9764 -0.0039 14 6 1.7463 -7.2472 -0.0042 15 8 0.5509 -7.4693 -0.0034 16 7 2.6221 -8.2715 -0.0001 17 6 2.1576 -9.5906 0.1004 18 6 0.9563 -9.9506 -0.4944 19 6 0.4980 -11.2535 -0.3954 20 6 1.2443 -12.2014 0.3010 21 6 2.4429 -11.8388 0.8935 22 6 2.9023 -10.5384 0.7902 23 17 4.4083 -10.0894 1.5278 24 8 0.5843 -13.3964 0.2538 25 6 -0.7665 -13.0746 -0.1267 26 8 -0.6281 -11.8548 -0.8798 27 1 -0.4851 0.8400 0.0004 28 1 0.3533 -2.3907 -0.0005 29 1 0.6166 -4.9201 -0.8920 30 1 0.6173 -4.9213 0.8880 31 1 3.1492 -5.7992 -0.0041 32 1 3.5738 -8.0963 -0.0667 33 1 0.3790 -9.2146 -1.0344 34 1 3.0217 -12.5738 1.4330 35 1 -1.3848 -12.9125 0.7563 36 1 -1.1870 -13.8634 -0.7503 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348228131.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:36 Heat of formation + Delta-G solvation = -118.213877 kcal Electronic energy + Delta-G solvation = -25855.249043 eV Core-core repulsion = 21559.111521 eV Total energy + Delta-G solvation = -4296.137521 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.066 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.26867 -41.74743 -40.25310 -39.16216 -37.45685 -37.33235 -36.26482 -35.62885 -35.35866 -33.36482 -31.56126 -30.54701 -28.88862 -26.84054 -26.30900 -24.52722 -23.94499 -22.17263 -21.39756 -20.20118 -20.05933 -19.56791 -19.03806 -18.43419 -17.79395 -17.39406 -17.03211 -16.91379 -16.49427 -16.17392 -15.86568 -15.84089 -15.67499 -15.35511 -15.21216 -14.88965 -14.66488 -14.41490 -14.04090 -13.97075 -13.67312 -13.52879 -13.03715 -12.89756 -12.88360 -12.45787 -12.19015 -12.13630 -12.11441 -11.55102 -11.43449 -10.92537 -10.55386 -10.30456 -10.08300 -9.82101 -8.91173 -8.49988 -6.00037 -0.27386 -0.05809 0.80475 1.18981 1.38949 1.44169 1.54721 1.70770 1.90773 1.96645 2.28413 2.30165 2.43686 2.92199 3.17494 3.18799 3.28113 3.66178 3.74652 3.99799 4.11243 4.19512 4.31394 4.36882 4.45623 4.46064 4.65289 4.79610 4.87031 4.95028 5.20264 5.33083 5.39400 5.68057 5.92882 5.93996 6.48818 6.75060 7.04580 7.25371 7.45709 7.95460 8.66570 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.021989 B = 0.002111 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.082430 B =13262.245904 C =14402.003581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.087 0.913 9 N -0.559 5.559 10 C 0.433 3.567 11 O -0.624 6.624 12 C 0.141 3.859 13 N -0.713 5.713 14 C 0.710 3.290 15 O -0.602 6.602 16 N -0.668 5.668 17 C 0.189 3.811 18 C -0.110 4.110 19 C 0.051 3.949 20 C 0.022 3.978 21 C -0.064 4.064 22 C -0.058 4.058 23 Cl -0.034 7.034 24 O -0.311 6.311 25 C 0.204 3.796 26 O -0.321 6.321 27 H 0.280 0.720 28 H 0.399 0.601 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.414 0.586 32 H 0.425 0.575 33 H 0.146 0.854 34 H 0.175 0.825 35 H 0.105 0.895 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.707 -26.050 1.309 26.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.105 0.895 9 N -0.194 5.194 10 C 0.220 3.780 11 O -0.512 6.512 12 C 0.012 3.988 13 N -0.370 5.370 14 C 0.410 3.590 15 O -0.482 6.482 16 N -0.318 5.318 17 C 0.092 3.908 18 C -0.132 4.132 19 C 0.005 3.995 20 C -0.023 4.023 21 C -0.083 4.083 22 C -0.088 4.088 23 Cl -0.005 7.005 24 O -0.228 6.228 25 C 0.094 3.906 26 O -0.237 6.237 27 H 0.089 0.911 28 H 0.234 0.766 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.252 0.748 32 H 0.264 0.736 33 H 0.163 0.837 34 H 0.193 0.807 35 H 0.123 0.877 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 1.324 -26.076 1.251 26.140 hybrid contribution 0.459 1.152 -0.054 1.241 sum 1.783 -24.925 1.197 25.017 Atomic orbital electron populations 1.69668 1.06978 1.29681 1.49251 1.26111 0.96524 1.02659 0.95837 0.84944 0.77725 0.76337 0.79096 1.19490 1.19747 1.19508 1.19692 0.92974 0.83517 1.50399 0.89512 1.41820 1.09632 1.04567 1.63408 1.20388 0.88117 0.85879 0.83580 1.90479 1.15149 1.87520 1.58010 1.20678 0.90789 0.82641 1.04657 1.44645 1.11532 1.02826 1.77982 1.15754 0.84845 0.80661 0.77705 1.90916 1.14898 1.84013 1.58331 1.42342 1.10787 1.02243 1.76388 1.16656 0.93872 0.83285 0.97026 1.19938 0.97354 0.92920 1.02941 1.19648 0.88994 0.93552 0.97306 1.19570 0.96618 0.84287 1.01849 1.19738 0.94079 0.94640 0.99893 1.20119 0.92364 0.93895 1.02438 1.98395 1.28779 1.92500 1.80831 1.87365 1.23809 1.25282 1.86317 1.26237 0.82931 0.85103 0.96376 1.87397 1.41861 1.36095 1.58368 0.91085 0.76642 0.88365 0.88494 0.74812 0.73588 0.83652 0.80739 0.87697 0.81467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.03 13.05 21.66 0.28 -47.75 16 2 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 3 Si 1.00 41.20 29.55 68.60 2.03 43.22 16 4 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.34 -18.16 9.68 84.04 0.81 -17.35 16 8 H 0.09 4.91 7.16 -2.91 -0.02 4.89 16 9 N -0.56 -27.27 5.29 -306.99 -1.62 -28.89 16 10 C 0.43 19.18 7.85 87.66 0.69 19.87 16 11 O -0.62 -31.00 15.24 -3.06 -0.05 -31.04 16 12 C 0.14 4.82 6.15 85.64 0.53 5.35 16 13 N -0.71 -21.79 5.53 -482.28 -2.67 -24.46 16 14 C 0.71 21.01 8.41 179.05 1.51 22.52 16 15 O -0.60 -21.18 13.76 -3.98 -0.05 -21.23 16 16 N -0.67 -15.51 5.06 -317.00 -1.61 -17.11 16 17 C 0.19 4.38 6.31 38.09 0.24 4.62 16 18 C -0.11 -2.84 8.71 22.46 0.20 -2.65 16 19 C 0.05 1.18 7.14 22.58 0.16 1.35 16 20 C 0.02 0.44 7.15 22.60 0.16 0.61 16 21 C -0.06 -1.09 9.83 22.35 0.22 -0.87 16 22 C -0.06 -1.10 6.33 22.44 0.14 -0.96 16 23 Cl -0.03 -0.56 27.93 -2.72 -0.08 -0.64 16 24 O -0.31 -5.42 11.41 -77.24 -0.88 -6.30 16 25 C 0.20 2.58 8.89 113.37 1.01 3.59 16 26 O -0.32 -6.87 11.41 -76.50 -0.87 -7.75 16 27 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 28 H 0.40 18.72 7.90 -92.71 -0.73 17.98 16 29 H 0.10 3.18 8.14 -2.38 -0.02 3.16 16 30 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 31 H 0.41 12.25 7.46 -92.71 -0.69 11.56 16 32 H 0.42 7.84 8.07 -92.71 -0.75 7.09 16 33 H 0.15 4.34 6.19 -2.91 -0.02 4.33 16 34 H 0.18 2.03 8.06 -2.91 -0.02 2.01 16 35 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.17 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -67.29 337.22 -0.35 -67.63 By element: Atomic # 1 Polarization: 39.28 SS G_CDS: -0.96 Total: 38.32 kcal Atomic # 6 Polarization: 29.86 SS G_CDS: 6.13 Total: 36.00 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -5.61 Total: -118.21 kcal Atomic # 8 Polarization: -64.46 SS G_CDS: -1.86 Total: -66.32 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.22 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -0.08 Total: -0.64 kcal Total: -67.29 -0.35 -67.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348228131.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.580 kcal (2) G-P(sol) polarization free energy of solvation -67.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds