Wall clock time and date at job start Wed Apr 1 2020 00:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46826 * 2 1 4 4 C 1.50693 * 109.47292 * 120.00311 * 2 1 3 5 5 H 1.07997 * 120.00399 * 120.00497 * 4 2 1 6 6 C 1.37882 * 119.99861 * 299.99624 * 4 2 1 7 7 N 1.31512 * 120.00063 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00133 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46996 * 60.00113 * 8 6 4 10 10 H 1.48500 * 109.47241 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47086 * 300.00506 * 8 6 4 12 12 N 1.46498 * 109.47004 * 240.00129 * 2 1 3 13 13 C 1.34777 * 120.00129 * 84.99988 * 12 2 1 14 14 O 1.21364 * 119.99988 * 359.97438 * 13 12 2 15 15 C 1.49302 * 120.00347 * 180.02562 * 13 12 2 16 16 O 1.21391 * 120.00107 * 359.97438 * 15 13 12 17 17 N 1.34776 * 120.00490 * 179.97438 * 15 13 12 18 18 C 1.38747 * 120.00135 * 179.97438 * 17 15 13 19 19 N 1.28755 * 125.04291 * 180.02562 * 18 17 15 20 20 C 1.33837 * 118.17647 * 180.09698 * 19 18 17 21 21 C 1.33780 * 112.68866 * 359.56867 * 20 19 18 22 22 S 1.70668 * 125.04525 * 359.97438 * 18 17 15 23 23 C 1.51551 * 127.88016 * 180.49711 * 21 20 19 24 24 S 1.81702 * 108.70638 * 342.85535 * 23 21 20 25 25 C 1.81934 * 101.22087 * 44.42249 * 24 23 21 26 26 C 1.51833 * 120.21313 * 179.47554 * 20 19 18 27 27 H 1.09005 * 109.46826 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47307 * 299.99805 * 1 2 3 29 29 H 1.09003 * 109.47486 * 60.00277 * 1 2 3 30 30 H 0.96999 * 120.00040 * 180.02562 * 7 6 4 31 31 H 0.97002 * 120.00341 * 264.99594 * 12 2 1 32 32 H 0.96995 * 119.99794 * 0.02562 * 17 15 13 33 33 H 1.08996 * 109.59764 * 223.08966 * 23 21 20 34 34 H 1.08994 * 109.59973 * 102.61853 * 23 21 20 35 35 H 1.09006 * 109.62347 * 175.43057 * 25 24 23 36 36 H 1.09000 * 109.78259 * 54.95546 * 25 24 23 37 37 H 1.09001 * 109.04864 * 39.20851 * 26 20 19 38 38 H 1.08996 * 109.04638 * 280.31537 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3226 -1.1195 4.0079 9 1 3.8076 -1.1190 4.0076 10 1 1.8271 -0.4199 5.2204 11 1 1.8282 -2.5198 4.0080 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3571 14 8 1.8580 1.1592 -2.4118 15 6 2.6441 -0.7221 -3.5764 16 8 2.9328 -1.8999 -3.5220 17 7 2.7723 -0.0499 -4.7375 18 6 3.2348 -0.7040 -5.8704 19 7 3.3946 -0.1584 -7.0256 20 6 3.8488 -0.9210 -8.0273 21 6 4.0832 -2.1828 -7.6498 22 16 3.6774 -2.3508 -5.9391 23 6 4.6083 -3.3250 -8.4962 24 16 4.4132 -2.8889 -10.2493 25 6 4.9982 -1.1662 -10.2528 26 6 4.0430 -0.3280 -9.4115 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 0.7089 1.1612 3.4844 31 1 2.2491 -1.6317 -1.1527 32 1 2.5420 0.8913 -4.7809 33 1 4.0422 -4.2309 -8.2796 34 1 5.6631 -3.4888 -8.2755 35 1 5.0147 -0.7872 -11.2747 36 1 6.0006 -1.1162 -9.8276 37 1 4.4463 0.6799 -9.3134 38 1 3.0776 -0.2761 -9.9149 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354406241.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:15 Heat of formation + Delta-G solvation = -39.539825 kcal Electronic energy + Delta-G solvation = -23928.008447 eV Core-core repulsion = 20215.912160 eV Total energy + Delta-G solvation = -3712.096287 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.29381 -40.99838 -39.93264 -37.31379 -36.61561 -34.65173 -34.31728 -32.52728 -31.18433 -28.62676 -27.38668 -26.44947 -25.50783 -23.87431 -22.90407 -21.80196 -21.04487 -19.95137 -19.21448 -18.44518 -18.04630 -17.56455 -17.45826 -17.00917 -16.88892 -16.26774 -16.09219 -15.68042 -15.32930 -15.18934 -15.06243 -14.60470 -14.47276 -14.37069 -13.87912 -13.79585 -13.57029 -13.15435 -13.09414 -12.94910 -12.89541 -12.74839 -12.30718 -12.17505 -11.90142 -11.76901 -11.19121 -11.10722 -10.90510 -10.85102 -10.63799 -10.23318 -10.07071 -9.42737 -8.76833 -8.20995 -6.38350 -0.66202 -0.17955 0.16326 0.45860 0.76953 0.87948 1.45825 1.47126 1.47852 1.55765 1.57933 1.97317 2.28385 2.45517 3.10127 3.15910 3.31752 3.50161 3.77776 4.07203 4.13378 4.21030 4.34486 4.55095 4.59014 4.68141 4.75517 4.84911 4.86346 4.99056 5.14009 5.22683 5.24393 5.44499 5.59731 5.76011 6.01568 6.09196 6.48434 6.55643 6.64437 6.96418 7.33498 8.84808 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.032925 B = 0.002119 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.206265 B =13209.260863 C =13761.136941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.269 3.731 3 H 0.018 0.982 4 C -0.552 4.552 5 H 0.073 0.927 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.971 3.029 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.266 1.266 12 N -0.662 5.662 13 C 0.507 3.493 14 O -0.549 6.549 15 C 0.522 3.478 16 O -0.490 6.490 17 N -0.593 5.593 18 C 0.236 3.764 19 N -0.525 5.525 20 C 0.084 3.916 21 C -0.275 4.275 22 S 0.248 5.752 23 C 0.002 3.998 24 S -0.262 6.262 25 C -0.071 4.071 26 C -0.039 4.039 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.021 0.979 30 H 0.268 0.732 31 H 0.414 0.586 32 H 0.439 0.561 33 H 0.126 0.874 34 H 0.119 0.881 35 H 0.141 0.859 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.177 -7.091 -24.098 26.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.166 3.834 3 H 0.036 0.964 4 C -0.591 4.591 5 H 0.091 0.909 6 C -0.181 4.181 7 N -0.550 5.550 8 Si 0.796 3.204 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.191 1.191 12 N -0.312 5.312 13 C 0.286 3.714 14 O -0.428 6.428 15 C 0.303 3.697 16 O -0.363 6.363 17 N -0.244 5.244 18 C -0.133 4.133 19 N -0.248 5.248 20 C -0.047 4.047 21 C -0.398 4.398 22 S 0.499 5.501 23 C -0.148 4.148 24 S -0.036 6.036 25 C -0.219 4.219 26 C -0.080 4.080 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.040 0.960 30 H 0.077 0.923 31 H 0.250 0.750 32 H 0.281 0.719 33 H 0.144 0.856 34 H 0.137 0.863 35 H 0.159 0.841 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.551 -7.852 -23.970 26.329 hybrid contribution 0.443 1.255 1.342 1.890 sum 7.994 -6.597 -22.628 24.889 Atomic orbital electron populations 1.21949 0.97300 0.99999 1.00448 1.18677 0.91787 0.92505 0.80384 0.96419 1.21443 1.33171 1.13892 0.90543 0.90869 1.25716 0.94744 0.95542 1.02076 1.70005 1.36462 1.23567 1.24928 0.85407 0.78653 0.78703 0.77663 1.19654 1.21060 1.19062 1.46252 1.61364 1.14974 1.08621 1.19512 0.80659 0.86863 0.84406 1.90766 1.51161 1.16084 1.84800 1.20497 0.78374 0.86742 0.84108 1.90684 1.47014 1.15153 1.83468 1.42351 1.61048 1.15922 1.05120 1.22886 1.03239 0.97025 0.90102 1.66074 1.21104 1.39417 0.98228 1.20829 0.99532 0.88714 0.95575 1.26414 1.13580 0.99492 1.00336 1.85013 1.59092 1.03905 1.02133 1.21939 1.05238 0.96506 0.91120 1.87182 1.87562 1.18147 1.10680 1.23412 1.01276 0.91685 1.05529 1.20348 1.01560 0.99608 0.86486 0.93933 0.90757 0.95973 0.92305 0.74995 0.71923 0.85551 0.86329 0.84091 0.88322 0.87796 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.55 9.26 71.98 0.67 -5.88 16 2 C 0.27 13.08 2.56 44.24 0.11 13.20 16 3 H 0.02 1.00 7.58 -2.38 -0.02 0.99 16 4 C -0.55 -27.99 8.73 25.60 0.22 -27.77 16 5 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 6 C 0.02 1.04 5.30 84.66 0.45 1.49 16 7 N -0.91 -49.76 11.32 21.45 0.24 -49.52 16 8 Si 0.97 40.62 29.54 68.60 2.03 42.64 16 9 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 10 H -0.29 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 12 N -0.66 -26.55 5.06 -447.59 -2.27 -28.82 16 13 C 0.51 19.01 7.85 87.22 0.68 19.70 16 14 O -0.55 -23.33 16.14 -3.29 -0.05 -23.38 16 15 C 0.52 16.25 7.85 87.22 0.68 16.94 16 16 O -0.49 -15.38 13.95 -3.37 -0.05 -15.43 16 17 N -0.59 -16.46 5.39 -315.95 -1.70 -18.16 16 18 C 0.24 6.31 8.17 179.54 1.47 7.78 16 19 N -0.52 -13.53 10.49 -188.01 -1.97 -15.50 16 20 C 0.08 1.77 6.61 41.60 0.28 2.04 16 21 C -0.28 -5.39 6.34 24.94 0.16 -5.23 16 22 S 0.25 5.76 20.17 -56.49 -1.14 4.62 16 23 C 0.00 0.03 6.78 71.51 0.49 0.51 16 24 S -0.26 -3.77 22.32 -56.49 -1.26 -5.04 16 25 C -0.07 -0.71 6.48 71.79 0.46 -0.24 16 26 C -0.04 -0.54 5.97 30.01 0.18 -0.36 16 27 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 28 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 29 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 31 H 0.41 14.91 8.01 -92.71 -0.74 14.17 16 32 H 0.44 11.49 8.29 -92.71 -0.77 10.72 16 33 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.14 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -61.12 348.72 -0.69 -61.81 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: -0.37 Total: 24.60 kcal Atomic # 6 Polarization: 16.31 SS G_CDS: 5.85 Total: 22.16 kcal Atomic # 7 Polarization: -106.30 SS G_CDS: -5.70 Total: -111.99 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -0.10 Total: -38.81 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.64 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -2.40 Total: -0.41 kcal Total: -61.12 -0.69 -61.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354406241.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.274 kcal (2) G-P(sol) polarization free energy of solvation -61.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds