Wall clock time and date at job start Tue Mar 31 2020 22:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34881 * 117.00274 * 2 1 4 4 O 1.21639 * 119.99661 * 359.97438 * 3 2 1 5 5 C 1.46430 * 120.00061 * 179.97438 * 3 2 1 6 6 C 1.44685 * 123.61155 * 5.48848 * 5 3 2 7 7 C 1.32518 * 113.16871 * 180.25787 * 6 5 3 8 8 S 1.75460 * 110.83308 * 359.76315 * 7 6 5 9 9 C 1.37194 * 123.61072 * 185.29926 * 5 3 2 10 10 N 1.38608 * 124.65769 * 0.02562 * 9 5 3 11 11 C 1.46757 * 124.35284 * 265.72541 * 10 9 5 12 12 C 1.54475 * 105.47571 * 197.04332 * 11 10 9 13 13 C 1.54628 * 101.76520 * 334.58369 * 12 11 10 14 14 H 1.08995 * 110.60077 * 266.06358 * 13 12 11 15 15 S 1.81399 * 110.48507 * 143.47268 * 13 12 11 16 16 C 1.81401 * 103.00046 * 178.77344 * 15 13 12 17 17 C 1.50699 * 109.47282 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00269 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00071 * 179.72634 * 17 16 15 20 20 N 1.31519 * 120.00145 * 0.27482 * 19 17 16 21 21 Si 1.86798 * 120.00168 * 180.27418 * 19 17 16 22 22 H 1.48500 * 109.47230 * 59.99882 * 21 19 17 23 23 H 1.48501 * 109.47209 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46946 * 299.99984 * 21 19 17 25 25 C 1.34419 * 124.34436 * 85.75844 * 10 9 5 26 26 O 1.21275 * 124.94427 * 359.60447 * 25 10 9 27 27 H 1.08998 * 109.47414 * 300.00296 * 1 2 3 28 28 H 1.08999 * 109.47113 * 60.00339 * 1 2 3 29 29 H 1.09003 * 109.47730 * 180.02562 * 1 2 3 30 30 H 1.07994 * 123.41992 * 0.02562 * 6 5 3 31 31 H 1.07992 * 124.58040 * 179.78473 * 7 6 5 32 32 H 1.08996 * 110.24869 * 316.04744 * 11 10 9 33 33 H 1.09005 * 110.24710 * 78.04308 * 11 10 9 34 34 H 1.09003 * 110.96910 * 216.46775 * 12 11 10 35 35 H 1.08998 * 110.96970 * 92.70623 * 12 11 10 36 36 H 1.08998 * 109.47023 * 60.00584 * 16 15 13 37 37 H 1.09004 * 109.47204 * 300.00476 * 16 15 13 38 38 H 0.96996 * 119.99897 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2018 0.0000 4 8 1.4018 2.2219 -0.0005 5 6 3.5267 1.2783 0.0006 6 6 4.3893 0.1224 -0.1141 7 6 5.6782 0.4288 -0.0852 8 16 5.9043 2.1611 0.0783 9 6 4.2255 2.4542 0.1061 10 7 3.6459 3.7077 0.2251 11 6 3.3758 4.6057 -0.9038 12 6 3.1535 6.0000 -0.2773 13 6 2.6793 5.6333 1.1480 14 1 1.5908 5.6017 1.1938 15 16 3.3301 6.8178 2.3580 16 6 2.6305 6.2273 3.9241 17 6 3.0858 7.1231 5.0471 18 1 3.7312 7.9638 4.8395 19 6 2.6736 6.8731 6.3388 20 7 1.8872 5.8496 6.5917 21 14 3.2318 7.9879 7.7298 22 1 2.7704 9.3749 7.4681 23 1 2.6542 7.5080 9.0110 24 1 4.7142 7.9673 7.8160 25 6 3.2596 4.2571 1.3894 26 8 3.3619 3.7272 2.4754 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3635 -1.0276 0.0005 30 1 4.0202 -0.8880 -0.2095 31 1 6.4809 -0.2904 -0.1535 32 1 4.2299 4.6281 -1.5807 33 1 2.4804 4.2841 -1.4358 34 1 2.3820 6.5509 -0.8154 35 1 4.0843 6.5662 -0.2452 36 1 2.9687 5.2083 4.1118 37 1 1.5421 6.2439 3.8650 38 1 1.5975 5.6735 7.5004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413016414.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:23 Heat of formation + Delta-G solvation = -98.083011 kcal Electronic energy + Delta-G solvation = -25000.718412 eV Core-core repulsion = 21253.790751 eV Total energy + Delta-G solvation = -3746.927661 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.059 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.10051 -41.23930 -38.52615 -37.63394 -37.40769 -35.30485 -33.96485 -30.70563 -30.21299 -28.86685 -28.72857 -26.11425 -25.31055 -23.15748 -22.88885 -22.23633 -20.83411 -19.31875 -18.68978 -18.25978 -18.24855 -17.51588 -17.50284 -17.37330 -16.69153 -16.58531 -15.68526 -15.46234 -15.16504 -14.99848 -14.82969 -14.56949 -14.53314 -14.40376 -14.12480 -13.83705 -13.76499 -13.62660 -13.24753 -13.03984 -12.72811 -12.48823 -12.38731 -12.18659 -11.96014 -11.89483 -11.71733 -11.55654 -11.46476 -10.87422 -10.76520 -10.15611 -10.00543 -9.65178 -8.60652 -8.33631 -6.49724 -0.71890 0.06317 0.64565 0.73366 0.73626 1.35394 1.40394 1.41675 1.49971 1.60290 1.76065 1.90681 2.02911 2.34873 2.99655 3.09969 3.36311 3.61489 3.76193 3.91674 3.98881 4.15662 4.23690 4.24157 4.33220 4.47149 4.60467 4.70899 4.83464 4.88514 4.90179 4.95854 5.08979 5.11404 5.18811 5.38755 5.52789 5.60479 5.85381 6.57092 6.58501 6.85156 7.18116 8.78850 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.013048 B = 0.003397 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.467373 B = 8239.605478 C = 8604.296487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.353 6.353 3 C 0.521 3.479 4 O -0.529 6.529 5 C -0.175 4.175 6 C -0.092 4.092 7 C -0.205 4.205 8 S 0.231 5.769 9 C 0.061 3.939 10 N -0.544 5.544 11 C 0.111 3.889 12 C -0.088 4.088 13 C -0.099 4.099 14 H 0.113 0.887 15 S -0.238 6.238 16 C 0.083 3.917 17 C -0.540 4.540 18 H 0.068 0.932 19 C 0.009 3.991 20 N -0.929 5.929 21 Si 0.984 3.016 22 H -0.260 1.260 23 H -0.276 1.276 24 H -0.264 1.264 25 C 0.528 3.472 26 O -0.548 6.548 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.140 0.860 30 H 0.184 0.816 31 H 0.219 0.781 32 H 0.122 0.878 33 H 0.090 0.910 34 H 0.136 0.864 35 H 0.105 0.895 36 H 0.021 0.979 37 H 0.001 0.999 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.689 -12.674 -23.123 26.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.269 6.269 3 C 0.366 3.634 4 O -0.421 6.421 5 C -0.196 4.196 6 C -0.119 4.119 7 C -0.341 4.341 8 S 0.499 5.501 9 C -0.151 4.151 10 N -0.275 5.275 11 C -0.010 4.010 12 C -0.127 4.127 13 C -0.231 4.231 14 H 0.131 0.869 15 S -0.008 6.008 16 C -0.065 4.065 17 C -0.578 4.578 18 H 0.086 0.914 19 C -0.192 4.192 20 N -0.568 5.568 21 Si 0.806 3.194 22 H -0.184 1.184 23 H -0.201 1.201 24 H -0.189 1.189 25 C 0.314 3.686 26 O -0.424 6.424 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.158 0.842 30 H 0.201 0.799 31 H 0.235 0.765 32 H 0.140 0.860 33 H 0.108 0.892 34 H 0.154 0.846 35 H 0.123 0.877 36 H 0.039 0.961 37 H 0.020 0.980 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.404 -10.993 -22.519 26.130 hybrid contribution -2.771 -1.601 1.438 3.509 sum 4.633 -12.593 -21.081 24.989 Atomic orbital electron populations 1.23553 0.74433 1.05968 1.02186 1.86551 1.25039 1.31215 1.84099 1.20557 0.88686 0.81789 0.72416 1.90858 1.67297 1.36921 1.46982 1.20272 0.90983 0.94537 1.13769 1.21244 0.91463 0.98656 1.00567 1.25893 1.01370 0.98124 1.08697 1.83330 0.98219 1.02997 1.65550 1.21841 0.99156 0.87559 1.06576 1.44738 1.59624 1.13972 1.09195 1.22583 1.04351 0.86885 0.87178 1.22629 1.05140 0.96708 0.88193 1.23949 1.04073 0.93624 1.01433 0.86923 1.86025 1.70402 1.40020 1.04379 1.20868 0.95810 0.98837 0.90968 1.20996 1.31888 1.13021 0.91929 0.91423 1.26084 0.94468 0.97059 1.01553 1.70135 1.35075 1.29782 1.21797 0.85229 0.78953 0.78617 0.76612 1.18397 1.20111 1.18909 1.21383 0.76387 0.87652 0.83199 1.90761 1.55855 1.68165 1.27628 0.93521 0.91274 0.84171 0.79896 0.76477 0.85995 0.89157 0.84613 0.87688 0.96058 0.98030 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.57 113.37 1.20 1.81 16 2 O -0.35 -8.91 10.30 -57.95 -0.60 -9.51 16 3 C 0.52 16.21 7.90 69.96 0.55 16.77 16 4 O -0.53 -19.41 15.23 19.38 0.30 -19.11 16 5 C -0.18 -4.85 6.00 -19.74 -0.12 -4.96 16 6 C -0.09 -1.70 10.13 22.78 0.23 -1.47 16 7 C -0.21 -2.97 11.09 66.68 0.74 -2.23 16 8 S 0.23 4.71 23.01 -56.49 -1.30 3.41 16 9 C 0.06 1.76 5.94 83.38 0.50 2.25 16 10 N -0.54 -17.31 1.89 -634.51 -1.20 -18.51 16 11 C 0.11 2.39 7.27 86.83 0.63 3.02 16 12 C -0.09 -2.03 6.72 31.65 0.21 -1.81 16 13 C -0.10 -3.70 3.46 30.59 0.11 -3.59 16 14 H 0.11 4.36 8.14 -2.39 -0.02 4.34 16 15 S -0.24 -11.08 20.96 -56.49 -1.18 -12.26 16 16 C 0.08 5.01 5.39 71.24 0.38 5.40 16 17 C -0.54 -33.50 9.13 25.60 0.23 -33.27 16 18 H 0.07 4.05 7.71 -2.91 -0.02 4.03 16 19 C 0.01 0.53 5.46 84.65 0.46 0.99 16 20 N -0.93 -60.10 13.29 21.45 0.28 -59.82 16 21 Si 0.98 46.38 29.54 68.60 2.03 48.41 16 22 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 25 C 0.53 22.33 7.02 87.90 0.62 22.95 16 26 O -0.55 -29.60 15.47 -3.01 -0.05 -29.64 16 27 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.18 2.40 8.06 -2.91 -0.02 2.37 16 31 H 0.22 1.26 8.06 -2.91 -0.02 1.24 16 32 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.14 2.21 8.14 -2.39 -0.02 2.20 16 35 H 0.10 2.24 7.88 -2.39 -0.02 2.22 16 36 H 0.02 1.43 6.30 -2.39 -0.02 1.42 16 37 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 Total: -1.00 -89.65 358.53 5.12 -84.53 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 1.09 Total: 6.67 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 5.74 Total: 5.84 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -0.91 Total: -78.33 kcal Atomic # 8 Polarization: -57.92 SS G_CDS: -0.35 Total: -58.27 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Atomic # 16 Polarization: -6.37 SS G_CDS: -2.48 Total: -8.85 kcal Total: -89.65 5.12 -84.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413016414.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.555 kcal (2) G-P(sol) polarization free energy of solvation -89.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds