Wall clock time and date at job start Tue Mar 31 2020 22:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 119.99864 * 2 1 4 4 H 1.48504 * 109.46923 * 269.99825 * 3 2 1 5 5 H 1.48491 * 109.47283 * 29.99992 * 3 2 1 6 6 H 1.48498 * 109.46748 * 150.00090 * 3 2 1 7 7 C 1.38799 * 120.00060 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00271 * 0.02562 * 7 2 1 9 9 S 1.76202 * 120.00168 * 180.02562 * 7 2 1 10 10 C 1.81002 * 100.00109 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47185 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99609 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00322 * 179.97438 * 11 10 9 14 14 C 1.47427 * 125.64613 * 359.97438 * 13 11 10 15 15 C 1.54909 * 104.83281 * 204.16163 * 14 13 11 16 16 C 1.55158 * 101.61642 * 322.96922 * 15 14 13 17 17 H 1.08996 * 110.72495 * 153.88672 * 16 15 14 18 18 O 1.42904 * 110.71806 * 277.16236 * 16 15 14 19 19 C 1.47014 * 125.65286 * 180.02562 * 13 11 10 20 20 H 1.09001 * 109.88533 * 59.49138 * 19 13 11 21 21 C 1.50704 * 109.88539 * 298.48229 * 19 13 11 22 22 C 1.38242 * 119.98188 * 321.17863 * 21 19 13 23 23 C 1.38222 * 120.00887 * 179.72384 * 22 21 19 24 24 C 1.38345 * 119.98432 * 0.54845 * 23 22 21 25 25 Cl 1.73604 * 120.01056 * 179.70391 * 24 23 22 26 26 C 1.38345 * 119.97907 * 359.72221 * 24 23 22 27 27 C 1.38222 * 119.98583 * 0.02562 * 26 24 23 28 28 H 0.96995 * 120.00395 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47283 * 59.99456 * 10 9 7 30 30 H 1.09006 * 109.46877 * 300.00014 * 10 9 7 31 31 H 1.09001 * 110.36908 * 85.32181 * 14 13 11 32 32 H 1.09000 * 110.46067 * 323.04540 * 14 13 11 33 33 H 1.09002 * 111.00594 * 81.06240 * 15 14 13 34 34 H 1.09002 * 111.00655 * 204.87504 * 15 14 13 35 35 H 0.96700 * 113.99819 * 298.54098 * 18 16 15 36 36 H 1.07997 * 119.99760 * 359.97438 * 22 21 19 37 37 H 1.08003 * 120.00522 * 180.27309 * 23 22 21 38 38 H 1.07994 * 120.00907 * 179.97438 * 26 24 23 39 39 H 1.07995 * 119.99234 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0866 -2.9846 0.0009 11 6 5.5731 -3.2326 0.0021 12 8 6.3440 -2.2963 0.0025 13 7 6.0458 -4.4947 0.0026 14 6 5.2251 -5.7194 0.0027 15 6 6.1393 -6.8092 0.6163 16 6 7.5234 -6.4211 0.0323 17 1 8.3269 -6.7656 0.6831 18 8 7.6801 -6.9455 -1.2878 19 6 7.4650 -4.8782 0.0043 20 1 7.9576 -4.4726 0.8880 21 6 8.1376 -4.3594 -1.2406 22 6 7.4671 -4.3837 -2.4493 23 6 8.0814 -3.9028 -3.5903 24 6 9.3715 -3.4077 -3.5246 25 17 10.1465 -2.8106 -4.9588 26 6 10.0441 -3.3889 -2.3158 27 6 9.4269 -3.8652 -1.1744 28 1 -0.4850 0.8400 0.0004 29 1 3.6440 -3.4315 -0.8893 30 1 3.6433 -3.4318 0.8907 31 1 4.9451 -5.9886 -1.0157 32 1 4.3349 -5.5816 0.6163 33 1 6.1434 -6.7484 1.7046 34 1 5.8397 -7.8031 0.2838 35 1 7.6445 -7.9107 -1.3343 36 1 6.4618 -4.7746 -2.5013 37 1 7.5559 -3.9177 -4.5337 38 1 11.0514 -3.0029 -2.2641 39 1 9.9517 -3.8502 -0.2307 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425107278.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:12 Heat of formation + Delta-G solvation = -55.235212 kcal Electronic energy + Delta-G solvation = -24931.476684 eV Core-core repulsion = 21184.363337 eV Total energy + Delta-G solvation = -3747.113347 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.064 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.75278 -38.78935 -37.94907 -36.44892 -35.46285 -32.44954 -32.06241 -31.20952 -30.99112 -28.98448 -27.64436 -25.62465 -23.79772 -22.88608 -22.19794 -21.20264 -19.25592 -17.89314 -17.71298 -17.14214 -16.69636 -16.18585 -15.49644 -15.25974 -15.03175 -14.95050 -14.67213 -14.23412 -13.83625 -13.57809 -13.50483 -13.44224 -13.20956 -12.82543 -12.60883 -12.44206 -12.30792 -12.06633 -11.75754 -11.51500 -11.35158 -11.27396 -11.01572 -10.99580 -10.82973 -10.63875 -10.36290 -9.86584 -9.55877 -9.01102 -8.98855 -8.79120 -8.50613 -8.47161 -6.93085 -6.29941 -4.01781 1.13793 1.34985 2.10854 2.61925 2.91002 3.13479 3.33330 3.50345 3.54382 3.60302 3.81367 4.09139 4.28638 4.32879 4.54386 4.64467 4.74228 4.76443 4.87543 5.00076 5.09279 5.12370 5.20760 5.32104 5.34077 5.39125 5.43978 5.54177 5.66939 5.69431 5.76824 5.93420 5.97778 6.16079 6.20896 6.24385 6.56640 6.79873 7.26386 7.50968 7.93072 8.39852 8.40506 9.16394 10.79287 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.010897 B = 0.003588 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.798943 B = 7802.414351 C = 9666.750665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.097 3.903 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.140 6.140 10 C -0.117 4.117 11 C 0.547 3.453 12 O -0.506 6.506 13 N -0.620 5.620 14 C 0.102 3.898 15 C -0.165 4.165 16 C 0.101 3.899 17 H 0.080 0.920 18 O -0.546 6.546 19 C 0.184 3.816 20 H 0.095 0.905 21 C -0.061 4.061 22 C -0.061 4.061 23 C -0.113 4.113 24 C -0.034 4.034 25 Cl -0.081 7.081 26 C -0.114 4.114 27 C -0.096 4.096 28 H 0.271 0.729 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.378 0.622 36 H 0.124 0.876 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.500 -18.084 -1.700 25.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.112 4.112 3 Si 0.680 3.320 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.268 4.268 11 C 0.336 3.664 12 O -0.378 6.378 13 N -0.357 5.357 14 C -0.021 4.021 15 C -0.203 4.203 16 C 0.041 3.959 17 H 0.098 0.902 18 O -0.352 6.352 19 C 0.080 3.920 20 H 0.112 0.888 21 C -0.062 4.062 22 C -0.079 4.079 23 C -0.131 4.131 24 C -0.060 4.060 25 Cl -0.053 7.053 26 C -0.132 4.132 27 C -0.115 4.115 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.225 0.775 36 H 0.142 0.858 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 19.533 -15.789 -1.965 25.193 hybrid contribution -0.929 -0.866 -0.023 1.270 sum 18.605 -16.655 -1.988 25.050 Atomic orbital electron populations 1.69933 1.05910 1.27786 1.48060 1.24694 0.94428 0.98926 0.93134 0.86751 0.81901 0.83318 0.79999 1.19171 1.19909 1.15926 1.22304 0.88232 0.97518 1.58840 0.89409 1.84830 1.09297 0.99829 1.97407 1.23260 0.93533 1.04379 1.05602 1.20004 0.90561 0.80547 0.75323 1.90731 1.58679 1.41032 1.47408 1.48568 1.05647 1.05618 1.75912 1.22296 0.94682 0.83691 1.01425 1.23522 0.95665 0.99397 1.01732 1.22708 0.96279 0.92167 0.84738 0.90212 1.86663 1.95730 1.25805 1.26989 1.20472 0.83038 0.92275 0.96171 0.88754 1.19747 0.94109 0.97684 0.94703 1.20720 0.99518 0.96634 0.91061 1.20990 0.93239 0.99342 0.99562 1.20859 0.94456 1.02742 0.87955 1.98353 1.81101 1.87027 1.38773 1.20880 1.00324 1.01072 0.90962 1.20820 0.94531 0.98243 0.97906 0.91925 0.88644 0.88577 0.90960 0.89894 0.89429 0.89170 0.77465 0.85761 0.85302 0.85286 0.85549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.52 13.97 55.49 0.78 -25.74 16 2 C 0.10 2.83 5.50 -17.43 -0.10 2.74 16 3 Si 0.86 21.88 27.74 -169.99 -4.72 17.16 16 4 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 7 C -0.52 -14.97 10.04 30.94 0.31 -14.66 16 8 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 9 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 10 C -0.12 -2.27 5.16 36.01 0.19 -2.09 16 11 C 0.55 9.79 7.50 -10.99 -0.08 9.71 16 12 O -0.51 -10.94 15.69 5.56 0.09 -10.85 16 13 N -0.62 -8.06 2.33 -164.26 -0.38 -8.44 16 14 C 0.10 0.95 6.68 -2.53 -0.02 0.93 16 15 C -0.16 -0.98 6.80 -24.58 -0.17 -1.15 16 16 C 0.10 0.71 4.18 -24.84 -0.10 0.61 16 17 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 18 O -0.55 -3.98 11.37 -35.23 -0.40 -4.38 16 19 C 0.18 2.05 3.04 -68.05 -0.21 1.85 16 20 H 0.09 1.04 8.03 -51.93 -0.42 0.63 16 21 C -0.06 -0.78 3.64 -104.62 -0.38 -1.17 16 22 C -0.06 -0.83 8.08 -39.59 -0.32 -1.15 16 23 C -0.11 -1.50 9.83 -39.55 -0.39 -1.89 16 24 C -0.03 -0.44 6.32 -39.50 -0.25 -0.69 16 25 Cl -0.08 -0.97 28.96 -51.86 -1.50 -2.47 16 26 C -0.11 -1.38 9.83 -39.55 -0.39 -1.77 16 27 C -0.10 -1.16 9.67 -39.59 -0.38 -1.54 16 28 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.10 1.75 8.14 -51.92 -0.42 1.32 16 30 H 0.10 1.72 7.85 -51.91 -0.41 1.32 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.76 7.48 -51.93 -0.39 0.37 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.38 1.10 9.11 45.56 0.42 1.52 16 36 H 0.12 1.68 7.70 -52.49 -0.40 1.27 16 37 H 0.13 1.55 8.06 -52.48 -0.42 1.12 16 38 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.13 1.23 8.05 -52.49 -0.42 0.80 16 LS Contribution 357.22 15.07 5.38 5.38 Total: -1.00 -35.41 357.22 -9.20 -44.61 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -4.16 Total: 0.56 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -2.29 Total: -10.27 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: 0.39 Total: -34.19 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.31 Total: -15.24 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.72 Total: 17.16 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.41 -9.20 -44.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425107278.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.629 kcal (2) G-P(sol) polarization free energy of solvation -35.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds