Wall clock time and date at job start Tue Mar 31 2020 22:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 119.99864 * 2 1 4 4 H 1.48504 * 109.46923 * 269.99825 * 3 2 1 5 5 H 1.48491 * 109.47283 * 29.99992 * 3 2 1 6 6 H 1.48498 * 109.46748 * 150.00090 * 3 2 1 7 7 C 1.38799 * 120.00060 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00271 * 0.02562 * 7 2 1 9 9 S 1.76202 * 120.00168 * 180.02562 * 7 2 1 10 10 C 1.81002 * 100.00109 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47185 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99609 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00322 * 179.97438 * 11 10 9 14 14 C 1.47427 * 125.64613 * 359.97438 * 13 11 10 15 15 C 1.54909 * 104.83281 * 204.16163 * 14 13 11 16 16 C 1.55158 * 101.61642 * 322.96922 * 15 14 13 17 17 H 1.08996 * 110.72495 * 153.88672 * 16 15 14 18 18 O 1.42904 * 110.71806 * 277.16236 * 16 15 14 19 19 C 1.47014 * 125.65286 * 180.02562 * 13 11 10 20 20 H 1.09001 * 109.88533 * 59.49138 * 19 13 11 21 21 C 1.50704 * 109.88539 * 298.48229 * 19 13 11 22 22 C 1.38242 * 119.98188 * 321.17863 * 21 19 13 23 23 C 1.38222 * 120.00887 * 179.72384 * 22 21 19 24 24 C 1.38345 * 119.98432 * 0.54845 * 23 22 21 25 25 Cl 1.73604 * 120.01056 * 179.70391 * 24 23 22 26 26 C 1.38345 * 119.97907 * 359.72221 * 24 23 22 27 27 C 1.38222 * 119.98583 * 0.02562 * 26 24 23 28 28 H 0.96995 * 120.00395 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47283 * 59.99456 * 10 9 7 30 30 H 1.09006 * 109.46877 * 300.00014 * 10 9 7 31 31 H 1.09001 * 110.36908 * 85.32181 * 14 13 11 32 32 H 1.09000 * 110.46067 * 323.04540 * 14 13 11 33 33 H 1.09002 * 111.00594 * 81.06240 * 15 14 13 34 34 H 1.09002 * 111.00655 * 204.87504 * 15 14 13 35 35 H 0.96700 * 113.99819 * 298.54098 * 18 16 15 36 36 H 1.07997 * 119.99760 * 359.97438 * 22 21 19 37 37 H 1.08003 * 120.00522 * 180.27309 * 23 22 21 38 38 H 1.07994 * 120.00907 * 179.97438 * 26 24 23 39 39 H 1.07995 * 119.99234 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0866 -2.9846 0.0009 11 6 5.5731 -3.2326 0.0021 12 8 6.3440 -2.2963 0.0025 13 7 6.0458 -4.4947 0.0026 14 6 5.2251 -5.7194 0.0027 15 6 6.1393 -6.8092 0.6163 16 6 7.5234 -6.4211 0.0323 17 1 8.3269 -6.7656 0.6831 18 8 7.6801 -6.9455 -1.2878 19 6 7.4650 -4.8782 0.0043 20 1 7.9576 -4.4726 0.8880 21 6 8.1376 -4.3594 -1.2406 22 6 7.4671 -4.3837 -2.4493 23 6 8.0814 -3.9028 -3.5903 24 6 9.3715 -3.4077 -3.5246 25 17 10.1465 -2.8106 -4.9588 26 6 10.0441 -3.3889 -2.3158 27 6 9.4269 -3.8652 -1.1744 28 1 -0.4850 0.8400 0.0004 29 1 3.6440 -3.4315 -0.8893 30 1 3.6433 -3.4318 0.8907 31 1 4.9451 -5.9886 -1.0157 32 1 4.3349 -5.5816 0.6163 33 1 6.1434 -6.7484 1.7046 34 1 5.8397 -7.8031 0.2838 35 1 7.6445 -7.9107 -1.3343 36 1 6.4618 -4.7746 -2.5013 37 1 7.5559 -3.9177 -4.5337 38 1 11.0514 -3.0029 -2.2641 39 1 9.9517 -3.8502 -0.2307 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425107278.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:11 Heat of formation + Delta-G solvation = -78.830713 kcal Electronic energy + Delta-G solvation = -24932.499862 eV Core-core repulsion = 21184.363337 eV Total energy + Delta-G solvation = -3748.136525 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.064 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.70780 -39.87530 -38.91256 -37.38391 -36.26332 -34.68822 -33.03420 -32.12628 -31.97764 -30.24989 -28.52415 -27.85227 -24.70809 -23.83763 -23.03540 -22.02806 -20.49508 -19.61406 -18.51439 -18.30758 -17.75563 -17.15740 -17.04826 -16.61044 -16.20688 -16.10206 -15.88024 -15.36229 -15.16201 -14.92433 -14.63287 -14.44077 -14.36971 -14.01112 -13.69317 -13.47938 -13.34260 -13.12642 -13.05023 -12.97131 -12.67641 -12.57162 -12.44603 -12.15535 -11.89125 -11.77277 -11.69541 -11.18871 -11.03240 -10.81764 -10.54339 -9.95687 -9.85493 -9.43834 -9.01866 -8.53202 -6.24009 0.17751 0.38656 0.94636 1.14652 1.29726 1.43482 1.50593 1.53311 2.01040 2.23303 2.64556 2.71100 2.85272 3.18800 3.46507 3.57981 3.73470 3.85015 3.92653 3.95646 4.09151 4.18424 4.28770 4.37470 4.40793 4.54038 4.56665 4.70841 4.74586 4.78817 4.98753 5.02985 5.16424 5.21313 5.27052 5.27526 5.60235 5.69318 5.86069 6.09609 6.33416 6.92243 7.01542 7.06989 8.59279 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.010897 B = 0.003588 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.798943 B = 7802.414351 C = 9666.750665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.049 3.951 3 Si 0.911 3.089 4 H -0.264 1.264 5 H -0.257 1.257 6 H -0.238 1.238 7 C -0.528 4.528 8 H 0.063 0.937 9 S -0.174 6.174 10 C -0.102 4.102 11 C 0.549 3.451 12 O -0.552 6.552 13 N -0.608 5.608 14 C 0.088 3.912 15 C -0.149 4.149 16 C 0.113 3.887 17 H 0.110 0.890 18 O -0.565 6.565 19 C 0.172 3.828 20 H 0.097 0.903 21 C -0.068 4.068 22 C -0.076 4.076 23 C -0.127 4.127 24 C -0.047 4.047 25 Cl -0.077 7.077 26 C -0.117 4.117 27 C -0.105 4.105 28 H 0.277 0.723 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.120 0.880 35 H 0.398 0.602 36 H 0.118 0.882 37 H 0.133 0.867 38 H 0.148 0.852 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.176 -19.821 -0.939 28.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.157 4.157 3 Si 0.733 3.267 4 H -0.189 1.189 5 H -0.181 1.181 6 H -0.161 1.161 7 C -0.676 4.676 8 H 0.081 0.919 9 S 0.053 5.947 10 C -0.253 4.253 11 C 0.337 3.663 12 O -0.429 6.429 13 N -0.343 5.343 14 C -0.034 4.034 15 C -0.187 4.187 16 C 0.053 3.947 17 H 0.127 0.873 18 O -0.374 6.374 19 C 0.069 3.931 20 H 0.115 0.885 21 C -0.069 4.069 22 C -0.094 4.094 23 C -0.146 4.146 24 C -0.074 4.074 25 Cl -0.048 7.048 26 C -0.136 4.136 27 C -0.123 4.123 28 H 0.087 0.913 29 H 0.123 0.877 30 H 0.130 0.870 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.138 0.862 35 H 0.249 0.751 36 H 0.136 0.864 37 H 0.151 0.849 38 H 0.166 0.834 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 21.205 -17.607 -1.204 27.588 hybrid contribution -1.421 -0.519 -0.299 1.542 sum 19.784 -18.125 -1.503 26.874 Atomic orbital electron populations 1.70005 1.07230 1.29028 1.49121 1.25506 0.95220 1.02070 0.92865 0.85913 0.80741 0.79855 0.80158 1.18905 1.18125 1.16145 1.22441 0.90139 0.96695 1.58294 0.91912 1.84747 1.06545 1.05901 1.97549 1.23208 0.95654 0.99591 1.06837 1.19595 0.89297 0.81863 0.75583 1.90706 1.59171 1.42882 1.50136 1.48465 1.07525 1.04980 1.73331 1.22657 0.95295 0.83220 1.02241 1.23525 0.93719 0.99332 1.02119 1.22665 0.97848 0.88913 0.85239 0.87294 1.86624 1.95807 1.27832 1.27159 1.20838 0.81274 0.95514 0.95464 0.88538 1.19985 0.94536 0.97412 0.94977 1.20757 0.99484 0.97496 0.91683 1.21144 0.93740 0.99800 0.99904 1.21006 0.94596 1.03188 0.88607 1.98347 1.80924 1.86976 1.38559 1.21178 1.01156 1.00581 0.90674 1.21162 0.94563 0.97702 0.98878 0.91327 0.87689 0.87025 0.90608 0.89700 0.88329 0.86178 0.75095 0.86355 0.84924 0.83439 0.83267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.85 13.97 21.65 0.30 -55.55 16 2 C 0.05 2.89 5.50 84.86 0.47 3.35 16 3 Si 0.91 45.42 27.74 68.60 1.90 47.32 16 4 H -0.26 -12.95 7.11 99.48 0.71 -12.24 16 5 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 6 H -0.24 -11.85 6.74 99.48 0.67 -11.18 16 7 C -0.53 -30.88 10.04 67.95 0.68 -30.20 16 8 H 0.06 3.86 8.03 -2.91 -0.02 3.83 16 9 S -0.17 -8.91 18.55 -56.49 -1.05 -9.96 16 10 C -0.10 -3.93 5.16 71.24 0.37 -3.57 16 11 C 0.55 19.37 7.50 87.66 0.66 20.03 16 12 O -0.55 -23.94 15.69 -3.03 -0.05 -23.99 16 13 N -0.61 -14.87 2.33 -791.99 -1.84 -16.72 16 14 C 0.09 1.41 6.68 86.85 0.58 1.99 16 15 C -0.15 -1.16 6.80 31.99 0.22 -0.95 16 16 C 0.11 1.18 4.18 31.82 0.13 1.31 16 17 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 18 O -0.57 -6.47 11.37 -148.98 -1.69 -8.16 16 19 C 0.17 3.46 3.04 44.63 0.14 3.60 16 20 H 0.10 1.92 8.03 -2.39 -0.02 1.90 16 21 C -0.07 -1.66 3.64 -19.86 -0.07 -1.73 16 22 C -0.08 -2.02 8.08 22.27 0.18 -1.84 16 23 C -0.13 -3.39 9.83 22.29 0.22 -3.17 16 24 C -0.05 -1.21 6.32 22.32 0.14 -1.07 16 25 Cl -0.08 -1.79 28.96 -2.72 -0.08 -1.87 16 26 C -0.12 -2.71 9.83 22.29 0.22 -2.49 16 27 C -0.10 -2.36 9.67 22.27 0.22 -2.15 16 28 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 29 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 30 H 0.11 3.93 7.85 -2.39 -0.02 3.91 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.08 1.36 7.48 -2.39 -0.02 1.34 16 33 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.40 0.84 9.11 -74.06 -0.67 0.16 16 36 H 0.12 3.18 7.70 -2.91 -0.02 3.16 16 37 H 0.13 3.25 8.06 -2.91 -0.02 3.22 16 38 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 39 H 0.15 2.56 8.05 -2.91 -0.02 2.53 16 Total: -1.00 -78.37 357.22 2.01 -76.36 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 0.37 Total: 9.44 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: 4.14 Total: -16.87 kcal Atomic # 7 Polarization: -70.72 SS G_CDS: -1.54 Total: -72.26 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -1.74 Total: -32.15 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.90 Total: 47.32 kcal Atomic # 16 Polarization: -8.91 SS G_CDS: -1.05 Total: -9.96 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -0.08 Total: -1.87 kcal Total: -78.37 2.01 -76.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425107278.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.466 kcal (2) G-P(sol) polarization free energy of solvation -78.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds