Wall clock time and date at job start Tue Mar 31 2020 23:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 H 1.09001 * 109.47042 * 140.70941 * 3 2 1 5 5 C 1.53005 * 109.47293 * 20.71656 * 3 2 1 6 6 C 1.53001 * 109.47175 * 175.00029 * 5 3 2 7 7 C 1.53003 * 109.46806 * 180.02562 * 6 5 3 8 8 N 1.46500 * 109.47393 * 260.71503 * 3 2 1 9 9 S 1.65602 * 119.99814 * 264.68194 * 8 3 2 10 10 O 1.42097 * 106.40135 * 178.07646 * 9 8 3 11 11 O 1.42103 * 106.40083 * 310.99807 * 9 8 3 12 12 C 1.76202 * 107.21823 * 64.53676 * 9 8 3 13 13 C 1.38633 * 119.75636 * 244.24298 * 12 9 8 14 14 C 1.37611 * 120.26177 * 179.76273 * 13 12 9 15 15 C 1.40734 * 119.76796 * 0.50970 * 14 13 12 16 16 C 1.41396 * 120.23726 * 179.76631 * 15 14 13 17 17 H 1.08005 * 120.00416 * 151.81948 * 16 15 14 18 18 C 1.39949 * 120.00062 * 331.82884 * 16 15 14 19 19 N 1.30826 * 120.00142 * 161.39785 * 18 16 15 20 20 Si 1.86804 * 119.99748 * 341.39401 * 18 16 15 21 21 H 1.48496 * 109.47076 * 95.31923 * 20 18 16 22 22 H 1.48497 * 109.47100 * 215.32388 * 20 18 16 23 23 H 1.48506 * 109.46837 * 335.32087 * 20 18 16 24 24 C 1.40676 * 119.53079 * 359.74521 * 15 14 13 25 25 C 1.37755 * 119.72666 * 359.97438 * 24 15 14 26 26 Cl 1.73606 * 119.88584 * 179.97438 * 25 24 15 27 27 H 4.18732 * 15.04014 * 0.02562 * 4 2 1 28 28 H 1.08998 * 109.46955 * 294.99697 * 5 3 2 29 29 H 1.09000 * 109.47277 * 54.99472 * 5 3 2 30 30 H 1.08998 * 109.46909 * 299.99697 * 6 5 3 31 31 H 1.08996 * 109.47008 * 59.99631 * 6 5 3 32 32 H 1.09006 * 109.46921 * 299.99288 * 7 6 5 33 33 H 1.08996 * 109.47656 * 60.00005 * 7 6 5 34 34 H 1.09000 * 109.46628 * 179.97438 * 7 6 5 35 35 H 0.96998 * 120.00262 * 84.95331 * 8 3 2 36 36 H 1.07998 * 119.86824 * 359.97438 * 13 12 9 37 37 H 1.07996 * 120.11201 * 180.22908 * 14 13 12 38 38 H 0.97000 * 119.99732 * 179.97438 * 19 18 16 39 39 H 1.07997 * 120.13736 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0089 0.7962 -0.6508 5 6 3.1566 -1.3484 -0.5103 6 6 4.6814 -1.3049 -0.6285 7 6 5.1919 -2.6537 -1.1394 8 7 3.1342 0.2237 1.3631 9 16 3.5349 1.7520 1.8593 10 8 3.9231 1.6426 3.2219 11 8 4.3786 2.2927 0.8518 12 6 2.0571 2.7114 1.8385 13 6 1.9460 3.7850 0.9685 14 6 0.7947 4.5383 0.9401 15 6 -0.2686 4.2223 1.8061 16 6 -1.4542 4.9927 1.7887 17 1 -2.3951 4.5423 2.0684 18 6 -1.4084 6.3388 1.4088 19 7 -2.5036 6.9521 1.0402 20 14 0.2167 7.2600 1.4281 21 1 0.8184 7.2306 0.0708 22 1 -0.0176 8.6686 1.8354 23 1 1.1410 6.6127 2.3935 24 6 -0.1439 3.1341 2.6889 25 6 1.0153 2.3900 2.6964 26 17 1.1739 1.0467 3.7846 27 1 -1.0500 -0.0003 0.0009 28 1 2.8686 -2.1337 0.1885 29 1 2.7220 -1.5550 -1.4883 30 1 4.9694 -0.5195 -1.3273 31 1 5.1159 -1.0982 0.3495 32 1 4.9039 -3.4394 -0.4408 33 1 4.7574 -2.8599 -2.1175 34 1 6.2782 -2.6226 -1.2240 35 1 3.2266 -0.5243 1.9737 36 1 2.7649 4.0291 0.3080 37 1 0.7094 5.3719 0.2588 38 1 -2.4719 7.8853 0.7773 39 1 -0.9540 2.8826 3.3573 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491374232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:53 Heat of formation + Delta-G solvation = -44.320002 kcal Electronic energy + Delta-G solvation = -25445.671502 eV Core-core repulsion = 21699.031473 eV Total energy + Delta-G solvation = -3746.640028 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.064 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.83886 -38.64572 -38.11959 -37.44469 -36.83977 -35.79833 -34.40563 -33.09226 -32.71619 -31.54911 -29.34685 -27.70161 -25.01723 -23.75961 -23.13347 -22.00279 -20.66690 -19.71895 -19.37981 -19.11102 -18.30550 -17.36069 -17.20261 -16.38759 -16.27569 -15.82069 -15.68076 -15.48657 -15.01332 -14.76341 -14.68156 -14.60949 -14.41815 -13.77178 -13.55938 -13.14520 -13.10756 -12.96587 -12.90041 -12.78702 -12.68296 -12.63348 -12.53791 -12.22920 -12.05296 -11.88196 -11.74807 -11.53078 -11.45436 -11.35648 -11.22912 -10.97741 -10.71100 -10.06369 -9.60647 -9.20822 -6.87663 -0.44639 0.12127 0.59004 1.09604 1.19290 1.33091 1.40825 1.69459 1.98032 1.98517 2.17813 2.45663 2.79305 3.16959 3.42497 3.54388 3.96731 4.01147 4.10548 4.20655 4.35177 4.38629 4.55611 4.61436 4.66649 4.74784 4.90537 4.97063 5.03741 5.07205 5.13415 5.19725 5.23207 5.31512 5.33607 5.43772 5.54863 5.61427 5.83058 6.03991 6.08787 6.37286 6.47078 6.78002 7.83079 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.015783 B = 0.004070 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.599919 B = 6878.235322 C = 6925.038266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.223 4.223 3 C 0.263 3.737 4 H 0.107 0.893 5 C -0.106 4.106 6 C -0.132 4.132 7 C -0.149 4.149 8 N -1.094 6.094 9 S 2.715 3.285 10 O -0.984 6.984 11 O -0.989 6.989 12 C -0.797 4.797 13 C 0.018 3.982 14 C -0.265 4.265 15 C 0.115 3.885 16 C -0.434 4.434 17 H 0.080 0.920 18 C 0.058 3.942 19 N -0.800 5.800 20 Si 0.953 3.047 21 H -0.247 1.247 22 H -0.268 1.268 23 H -0.255 1.255 24 C -0.222 4.222 25 C 0.099 3.901 26 Cl -0.072 7.072 27 H 0.228 0.772 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.426 0.574 36 H 0.139 0.861 37 H 0.115 0.885 38 H 0.307 0.693 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.335 -12.655 -4.231 15.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.225 4.225 3 C 0.156 3.844 4 H 0.125 0.875 5 C -0.145 4.145 6 C -0.170 4.170 7 C -0.206 4.206 8 N -0.854 5.854 9 S 2.808 3.192 10 O -0.975 6.975 11 O -0.979 6.979 12 C -0.889 4.889 13 C -0.001 4.001 14 C -0.285 4.285 15 C 0.111 3.889 16 C -0.460 4.460 17 H 0.098 0.902 18 C -0.165 4.165 19 N -0.422 5.422 20 Si 0.775 3.225 21 H -0.172 1.172 22 H -0.193 1.193 23 H -0.179 1.179 24 C -0.243 4.243 25 C 0.071 3.929 26 Cl -0.043 7.043 27 H 0.245 0.755 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.263 0.737 36 H 0.157 0.843 37 H 0.133 0.867 38 H 0.118 0.882 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.983 -12.133 -4.089 15.640 hybrid contribution -1.142 0.513 0.424 1.322 sum 7.841 -11.620 -3.665 14.489 Atomic orbital electron populations 1.25455 0.96672 0.99787 0.97920 1.23727 0.95202 1.01417 1.02163 1.17787 0.82672 1.01657 0.82282 0.87538 1.21811 0.96214 0.93640 1.02800 1.21603 0.94475 0.98912 1.01989 1.21745 1.01117 0.96252 1.01490 1.55413 1.82858 1.25620 1.21520 1.00781 0.73321 0.72707 0.72441 1.93538 1.82440 1.86280 1.35207 1.93482 1.64772 1.78893 1.60753 1.29619 1.22464 1.20287 1.16515 1.20495 0.96321 0.90609 0.92712 1.21239 0.96740 1.05395 1.05096 1.17842 0.91815 0.91011 0.88279 1.19822 0.94938 0.95494 1.35779 0.90187 1.26882 1.01377 0.98497 0.89698 1.69651 1.31652 1.14326 1.26567 0.85665 0.78252 0.77267 0.81334 1.17211 1.19343 1.17883 1.21010 0.97817 1.01197 1.04243 1.20040 0.94478 0.88495 0.89900 1.98334 1.97627 1.44893 1.63487 0.75507 0.89835 0.88951 0.91786 0.92055 0.92196 0.92053 0.92406 0.73749 0.84287 0.86727 0.88191 0.86118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.94 19.25 74.32 1.43 -3.51 16 2 C -0.22 -6.14 12.85 31.12 0.40 -5.74 16 3 C 0.26 6.38 2.74 43.19 0.12 6.50 16 4 H 0.11 2.69 7.51 -2.39 -0.02 2.67 16 5 C -0.11 -1.83 4.77 30.60 0.15 -1.69 16 6 C -0.13 -2.24 5.82 30.60 0.18 -2.06 16 7 C -0.15 -1.97 9.91 71.98 0.71 -1.26 16 8 N -1.09 -29.01 4.61 -177.02 -0.82 -29.83 16 9 S 2.71 95.39 5.03 -56.49 -0.28 95.11 16 10 O -0.98 -38.53 16.50 -128.00 -2.11 -40.64 16 11 O -0.99 -36.99 16.30 -128.00 -2.09 -39.08 16 12 C -0.80 -32.01 5.86 22.48 0.13 -31.88 16 13 C 0.02 0.76 9.52 22.22 0.21 0.97 16 14 C -0.26 -11.77 7.17 22.73 0.16 -11.60 16 15 C 0.11 5.38 5.14 -21.30 -0.11 5.27 16 16 C -0.43 -21.46 9.58 23.46 0.22 -21.23 16 17 H 0.08 4.16 8.06 -2.91 -0.02 4.14 16 18 C 0.06 2.71 5.41 85.26 0.46 3.17 16 19 N -0.80 -38.06 13.93 21.83 0.30 -37.75 16 20 Si 0.95 38.23 24.48 68.60 1.68 39.91 16 21 H -0.25 -9.28 6.68 99.48 0.66 -8.62 16 22 H -0.27 -9.96 7.11 99.48 0.71 -9.26 16 23 H -0.26 -10.89 6.84 99.48 0.68 -10.21 16 24 C -0.22 -9.77 9.57 22.75 0.22 -9.55 16 25 C 0.10 4.05 6.29 22.27 0.14 4.19 16 26 Cl -0.07 -2.56 26.40 -2.72 -0.07 -2.64 16 27 H 0.23 5.20 7.80 -4.42 -0.03 5.16 16 28 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 1.11 7.75 -2.39 -0.02 1.09 16 32 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.43 9.34 8.84 -96.75 -0.85 8.48 16 36 H 0.14 5.14 7.31 -2.91 -0.02 5.12 16 37 H 0.12 4.90 4.53 -2.91 -0.01 4.89 16 38 H 0.31 12.89 8.30 -92.71 -0.77 12.12 16 39 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 Total: -1.00 -58.02 358.77 1.20 -56.82 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: 0.16 Total: 26.53 kcal Atomic # 6 Polarization: -72.86 SS G_CDS: 4.43 Total: -68.43 kcal Atomic # 7 Polarization: -67.07 SS G_CDS: -0.51 Total: -67.58 kcal Atomic # 8 Polarization: -75.52 SS G_CDS: -4.20 Total: -79.72 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 1.68 Total: 39.91 kcal Atomic # 16 Polarization: 95.39 SS G_CDS: -0.28 Total: 95.11 kcal Atomic # 17 Polarization: -2.56 SS G_CDS: -0.07 Total: -2.64 kcal Total: -58.02 1.20 -56.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491374232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.500 kcal (2) G-P(sol) polarization free energy of solvation -58.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds