Wall clock time and date at job start Tue Mar 31 2020 23:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46988 * 186.96359 * 3 2 1 5 5 C 1.53000 * 109.47021 * 66.96695 * 3 2 1 6 6 N 1.46492 * 109.47422 * 306.96681 * 3 2 1 7 7 C 1.46499 * 119.99860 * 305.61635 * 6 3 2 8 8 S 1.65600 * 120.00147 * 125.61418 * 6 3 2 9 9 O 1.42095 * 106.40499 * 38.77071 * 8 6 3 10 10 O 1.42102 * 106.40268 * 171.68915 * 8 6 3 11 11 C 1.76201 * 107.21839 * 285.23025 * 8 6 3 12 12 C 1.38633 * 119.75703 * 114.90094 * 11 8 6 13 13 C 1.37600 * 120.26100 * 179.76541 * 12 11 8 14 14 C 1.40741 * 119.77106 * 0.50482 * 13 12 11 15 15 C 1.41405 * 120.23599 * 179.77204 * 14 13 12 16 16 H 1.07998 * 119.99811 * 144.77885 * 15 14 13 17 17 C 1.39934 * 119.99788 * 324.77576 * 15 14 13 18 18 N 1.30830 * 119.99903 * 169.14968 * 17 15 14 19 19 Si 1.86805 * 120.00445 * 349.15252 * 17 15 14 20 20 H 1.48500 * 109.47112 * 87.08033 * 19 17 15 21 21 H 1.48501 * 109.47228 * 207.08180 * 19 17 15 22 22 H 1.48505 * 109.46692 * 327.07999 * 19 17 15 23 23 C 1.40681 * 119.52565 * 359.74496 * 14 13 12 24 24 C 1.37748 * 119.72981 * 0.02562 * 23 14 13 25 25 Cl 1.73602 * 119.88643 * 179.97438 * 24 23 14 26 26 H 4.44651 * 5.63387 * 179.97438 * 4 1 2 27 27 H 1.08999 * 109.47029 * 179.97438 * 4 3 2 28 28 H 1.09001 * 109.46864 * 300.00486 * 4 3 2 29 29 H 1.08996 * 109.46629 * 59.99955 * 4 3 2 30 30 H 1.09004 * 109.47482 * 289.92732 * 5 3 2 31 31 H 1.09004 * 109.47380 * 49.92699 * 5 3 2 32 32 H 1.08999 * 109.47603 * 169.92473 * 5 3 2 33 33 H 1.09001 * 109.47052 * 269.99579 * 7 6 3 34 34 H 1.08999 * 109.47357 * 30.00140 * 7 6 3 35 35 H 1.09006 * 109.47396 * 150.00104 * 7 6 3 36 36 H 1.07994 * 119.86544 * 359.97438 * 12 11 8 37 37 H 1.07994 * 120.11530 * 180.23250 * 13 12 11 38 38 H 0.97005 * 120.00017 * 179.97438 * 18 17 15 39 39 H 1.07997 * 120.12958 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.4328 0.1749 5 6 3.1563 -0.5635 -1.3275 6 7 3.1348 -0.8297 1.1035 7 6 2.6823 -0.5692 2.4723 8 16 4.1987 -2.0627 0.8037 9 8 5.0954 -1.5863 -0.1904 10 8 4.6268 -2.5406 2.0716 11 6 3.2833 -3.3726 0.0614 12 6 3.5529 -3.7456 -1.2463 13 6 2.8477 -4.7703 -1.8345 14 6 1.8418 -5.4339 -1.1074 15 6 1.1078 -6.4850 -1.7039 16 1 0.7905 -7.3280 -1.1080 17 6 0.7923 -6.4328 -3.0662 18 7 0.3048 -7.4885 -3.6657 19 14 1.0674 -4.8558 -4.0290 20 1 2.4609 -4.8254 -4.5413 21 1 0.1191 -4.8009 -5.1705 22 1 0.8410 -3.6876 -3.1406 23 6 1.5724 -5.0443 0.2173 24 6 2.2939 -4.0190 0.7880 25 17 1.9643 -3.5346 2.4221 26 1 -1.0502 -0.0004 -0.0002 27 1 4.2454 1.4332 0.1753 28 1 2.7916 2.0505 -0.6462 29 1 2.7918 1.8347 1.1206 30 1 2.9476 -1.6325 -1.3722 31 1 2.6534 -0.0604 -2.1534 32 1 4.2312 -0.3997 -1.4028 33 1 3.3574 0.1414 2.9491 34 1 1.6748 -0.1538 2.4491 35 1 2.6779 -1.5014 3.0372 36 1 4.3218 -3.2321 -1.8043 37 1 3.0622 -5.0614 -2.8521 38 1 0.0857 -7.4523 -4.6100 39 1 0.8030 -5.5471 0.7843 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491537185.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:50 Heat of formation + Delta-G solvation = -9.073721 kcal Electronic energy + Delta-G solvation = -26488.970383 eV Core-core repulsion = 22743.858748 eV Total energy + Delta-G solvation = -3745.111635 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.064 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.99155 -39.38533 -38.31754 -37.52111 -36.84720 -35.78065 -33.86791 -32.84013 -32.07092 -31.63059 -28.64559 -27.63016 -26.59603 -23.80199 -23.78909 -23.16074 -20.33597 -19.74323 -19.32384 -18.67368 -17.86381 -17.45193 -17.19073 -16.35973 -16.28787 -15.90756 -15.65343 -15.08356 -14.91865 -14.81719 -14.71091 -14.49859 -14.45540 -13.75229 -13.60586 -13.53665 -13.27994 -13.10563 -12.99111 -12.93405 -12.73954 -12.65186 -12.59852 -12.39819 -12.09957 -11.97512 -11.84241 -11.81474 -11.42327 -11.42044 -11.15413 -11.08186 -10.24568 -9.95600 -9.66383 -9.13892 -6.89043 -0.52512 0.04822 0.50430 1.00403 1.20199 1.30968 1.40725 1.60852 1.91817 1.98371 2.16721 2.37842 2.72699 3.08559 3.32987 3.48071 3.66146 3.96811 3.99429 4.18126 4.34548 4.54820 4.57688 4.59543 4.64528 4.74500 4.77721 4.84364 4.86656 4.92360 5.03009 5.08687 5.10210 5.17629 5.24398 5.32518 5.41618 5.59357 5.65766 5.80128 6.03429 6.33114 6.46419 6.70216 7.90800 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.014005 B = 0.005377 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.765072 B = 5206.135833 C = 5722.284218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.215 4.215 3 C 0.291 3.709 4 C -0.145 4.145 5 C -0.218 4.218 6 N -0.985 5.985 7 C 0.080 3.920 8 S 2.711 3.289 9 O -0.976 6.976 10 O -0.982 6.982 11 C -0.793 4.793 12 C 0.020 3.980 13 C -0.261 4.261 14 C 0.116 3.884 15 C -0.445 4.445 16 H 0.075 0.925 17 C 0.053 3.947 18 N -0.815 5.815 19 Si 0.955 3.045 20 H -0.245 1.245 21 H -0.269 1.269 22 H -0.252 1.252 23 C -0.219 4.219 24 C 0.088 3.912 25 Cl -0.067 7.067 26 H 0.243 0.757 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.117 0.883 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.147 0.853 37 H 0.123 0.877 38 H 0.305 0.695 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.788 16.031 3.773 16.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.217 4.217 3 C 0.205 3.795 4 C -0.204 4.204 5 C -0.275 4.275 6 N -0.823 5.823 7 C -0.064 4.064 8 S 2.806 3.194 9 O -0.967 6.967 10 O -0.972 6.972 11 C -0.884 4.884 12 C 0.000 4.000 13 C -0.281 4.281 14 C 0.112 3.888 15 C -0.472 4.472 16 H 0.093 0.907 17 C -0.166 4.166 18 N -0.438 5.438 19 Si 0.777 3.223 20 H -0.169 1.169 21 H -0.194 1.194 22 H -0.175 1.175 23 C -0.240 4.240 24 C 0.060 3.940 25 Cl -0.038 7.038 26 H 0.260 0.740 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.136 0.864 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.164 0.836 37 H 0.140 0.860 38 H 0.116 0.884 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.545 15.862 3.945 16.418 hybrid contribution -1.200 -0.777 -0.494 1.512 sum 0.346 15.085 3.452 15.479 Atomic orbital electron populations 1.25652 0.96622 0.99053 0.98321 1.23374 0.94644 1.01672 1.01994 1.17201 0.83575 0.93147 0.85602 1.22143 1.02289 0.92027 1.03925 1.23186 1.05919 1.02249 0.96180 1.57553 1.64603 1.46332 1.13827 1.21818 1.01773 1.02635 0.80203 1.01084 0.73423 0.72520 0.72417 1.93462 1.62535 1.79940 1.60729 1.93506 1.80438 1.80909 1.42383 1.29885 1.22330 1.28552 1.07589 1.20541 0.95304 0.92802 0.91357 1.21441 1.01276 1.03492 1.01845 1.17929 0.89450 0.89742 0.91677 1.19738 1.28880 1.03903 0.94703 0.90655 1.26870 0.91324 1.00646 0.97807 1.69625 1.29510 1.30713 1.13958 0.85656 0.79857 0.78648 0.78151 1.16934 1.19439 1.17543 1.21154 1.04215 1.01033 0.97566 1.20165 0.94270 0.95271 0.84256 1.98321 1.94720 1.90144 1.20609 0.74049 0.90631 0.89553 0.90707 0.92436 0.88511 0.86423 0.90345 0.89764 0.91275 0.83565 0.85977 0.88415 0.85985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.17 19.25 74.32 1.43 -2.74 16 2 C -0.22 -5.68 10.73 31.12 0.33 -5.34 16 3 C 0.29 7.63 1.03 1.80 0.00 7.63 16 4 C -0.15 -2.80 8.49 71.98 0.61 -2.19 16 5 C -0.22 -6.13 7.01 71.98 0.50 -5.62 16 6 N -0.99 -28.75 2.95 -504.01 -1.49 -30.23 16 7 C 0.08 1.99 9.00 127.77 1.15 3.14 16 8 S 2.71 97.39 4.45 -56.49 -0.25 97.14 16 9 O -0.98 -35.31 13.22 -128.00 -1.69 -37.00 16 10 O -0.98 -38.95 15.19 -128.00 -1.94 -40.89 16 11 C -0.79 -32.04 4.93 22.48 0.11 -31.93 16 12 C 0.02 0.79 7.60 22.21 0.17 0.96 16 13 C -0.26 -11.50 7.16 22.73 0.16 -11.33 16 14 C 0.12 5.51 5.04 -21.29 -0.11 5.40 16 15 C -0.45 -22.49 9.59 23.46 0.23 -22.26 16 16 H 0.08 4.07 8.06 -2.91 -0.02 4.04 16 17 C 0.05 2.55 5.47 85.25 0.47 3.01 16 18 N -0.82 -39.73 13.93 21.82 0.30 -39.42 16 19 Si 0.96 37.85 24.52 68.60 1.68 39.54 16 20 H -0.24 -9.05 6.45 99.48 0.64 -8.40 16 21 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 22 H -0.25 -10.32 6.98 99.48 0.69 -9.63 16 23 C -0.22 -9.80 9.57 22.75 0.22 -9.58 16 24 C 0.09 3.68 6.29 22.27 0.14 3.82 16 25 Cl -0.07 -2.39 23.25 -2.72 -0.06 -2.46 16 26 H 0.24 3.87 7.80 -4.41 -0.03 3.84 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.07 1.26 7.81 -2.39 -0.02 1.24 16 30 H 0.06 1.89 3.79 -2.39 -0.01 1.88 16 31 H 0.10 2.29 8.10 -2.38 -0.02 2.27 16 32 H 0.12 3.29 5.86 -2.39 -0.01 3.27 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.08 1.83 7.04 -2.39 -0.02 1.81 16 35 H 0.07 1.92 4.56 -2.38 -0.01 1.91 16 36 H 0.15 5.20 7.22 -2.91 -0.02 5.18 16 37 H 0.12 5.15 4.71 -2.91 -0.01 5.14 16 38 H 0.30 13.16 8.30 -92.70 -0.77 12.40 16 39 H 0.12 5.23 8.06 -2.91 -0.02 5.20 16 Total: -1.00 -58.08 334.93 2.98 -55.10 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: 1.01 Total: 25.27 kcal Atomic # 6 Polarization: -72.46 SS G_CDS: 5.42 Total: -67.04 kcal Atomic # 7 Polarization: -68.48 SS G_CDS: -1.18 Total: -69.66 kcal Atomic # 8 Polarization: -74.26 SS G_CDS: -3.64 Total: -77.89 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 1.68 Total: 39.54 kcal Atomic # 16 Polarization: 97.39 SS G_CDS: -0.25 Total: 97.14 kcal Atomic # 17 Polarization: -2.39 SS G_CDS: -0.06 Total: -2.46 kcal Total: -58.08 2.98 -55.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491537185.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.031 kcal (2) G-P(sol) polarization free energy of solvation -58.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds