Wall clock time and date at job start Tue Mar 31 2020 23:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.09009 * 109.46807 * 97.64227 * 3 2 1 5 5 N 1.46496 * 109.47144 * 217.63711 * 3 2 1 6 6 S 1.65604 * 120.00178 * 263.96711 * 5 3 2 7 7 O 1.42102 * 106.40110 * 178.20052 * 6 5 3 8 8 O 1.42099 * 106.39873 * 311.11530 * 6 5 3 9 9 C 1.76195 * 107.21929 * 64.65776 * 6 5 3 10 10 C 1.38631 * 119.75755 * 243.94743 * 9 6 5 11 11 C 1.37603 * 120.26524 * 179.76843 * 10 9 6 12 12 C 1.40740 * 119.77067 * 0.50366 * 11 10 9 13 13 C 1.41397 * 120.23899 * 179.77130 * 12 11 10 14 14 H 1.07996 * 119.99963 * 28.59020 * 13 12 11 15 15 C 1.39941 * 119.99893 * 208.58457 * 13 12 11 16 16 N 1.30827 * 119.99862 * 11.42156 * 15 13 12 17 17 Si 1.86800 * 120.00033 * 191.41342 * 15 13 12 18 18 H 1.48501 * 109.47070 * 90.00313 * 17 15 13 19 19 H 1.48499 * 109.47121 * 210.00488 * 17 15 13 20 20 H 1.48496 * 109.47172 * 330.00426 * 17 15 13 21 21 C 1.40682 * 119.52062 * 359.75028 * 12 11 10 22 22 C 1.37751 * 119.73466 * 0.02562 * 21 12 11 23 23 Cl 1.73603 * 119.88760 * 179.97438 * 22 21 12 24 24 C 1.52995 * 109.47550 * 337.64118 * 3 2 1 25 25 C 1.52997 * 109.47094 * 60.00044 * 24 3 2 26 26 C 1.52998 * 109.47273 * 179.97438 * 24 3 2 27 27 H 4.18738 * 15.04042 * 0.02562 * 4 2 1 28 28 H 0.96996 * 120.00018 * 83.96029 * 5 3 2 29 29 H 1.08004 * 119.86677 * 359.97438 * 10 9 6 30 30 H 1.07997 * 120.11544 * 180.23654 * 11 10 9 31 31 H 0.97008 * 120.00009 * 179.97438 * 16 15 13 32 32 H 1.07998 * 120.12913 * 180.02562 * 21 12 11 33 33 H 1.08996 * 109.46866 * 300.00080 * 24 3 2 34 34 H 1.09004 * 109.47542 * 60.00287 * 25 24 3 35 35 H 1.09005 * 109.47248 * 180.02562 * 25 24 3 36 36 H 1.09006 * 109.47081 * 299.99774 * 25 24 3 37 37 H 1.08997 * 109.47223 * 179.97438 * 26 24 3 38 38 H 1.08996 * 109.47444 * 299.99976 * 26 24 3 39 39 H 1.09002 * 109.47190 * 60.00298 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0093 0.1375 -1.0186 5 7 3.1338 1.0946 0.8434 6 16 3.5513 2.5442 0.1601 7 8 3.9379 3.3956 1.2301 8 8 4.4013 2.2403 -0.9374 9 6 2.0844 3.2399 -0.5244 10 6 1.9879 3.4316 -1.8940 11 6 0.8452 3.9697 -2.4401 12 6 -0.2244 4.3360 -1.6020 13 6 -1.4012 4.8943 -2.1522 14 1 -1.7009 4.6391 -3.1579 15 6 -2.1777 5.7774 -1.3935 16 7 -1.7099 6.2613 -0.2716 17 14 -3.8818 6.2654 -1.9828 18 1 -4.8842 5.3123 -1.4425 19 1 -4.1961 7.6367 -1.5073 20 1 -3.9198 6.2353 -3.4669 21 6 -0.1144 4.1423 -0.2129 22 6 1.0369 3.5977 0.3119 23 17 1.1771 3.3576 2.0255 24 6 3.1567 -1.3331 0.5487 25 6 2.6473 -2.4756 -0.3322 26 6 4.6867 -1.3326 0.5481 27 1 -1.0500 0.0005 0.0002 28 1 3.2122 0.9700 1.8021 29 1 2.8115 3.1543 -2.5352 30 1 0.7712 4.1144 -3.5078 31 1 -2.2480 6.8738 0.2541 32 1 -0.9294 4.4196 0.4393 33 1 2.7934 -1.4699 1.5672 34 1 3.0105 -2.3388 -1.3508 35 1 3.0107 -3.4259 0.0589 36 1 1.5572 -2.4761 -0.3322 37 1 5.0505 -2.2826 0.9394 38 1 5.0496 -1.1960 -0.4706 39 1 5.0500 -0.5186 1.1755 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491630153.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:00 Heat of formation + Delta-G solvation = -27.011051 kcal Electronic energy + Delta-G solvation = -25634.389976 eV Core-core repulsion = 21888.500520 eV Total energy + Delta-G solvation = -3745.889456 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.064 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -37.94545 -37.80038 -36.48798 -35.58697 -35.14864 -34.05461 -32.93024 -31.94179 -30.28806 -29.44661 -27.13223 -25.99838 -25.89208 -21.76357 -21.32506 -20.76109 -18.94146 -18.29957 -17.80436 -17.16300 -16.64856 -16.10724 -15.54235 -15.02996 -14.58406 -14.45653 -14.18389 -13.72552 -13.40508 -13.18602 -12.84342 -12.71948 -12.56759 -12.30677 -12.20170 -11.86748 -11.67207 -11.51014 -11.41920 -11.28811 -11.27148 -11.14968 -11.06467 -10.86998 -10.60835 -10.45809 -10.37383 -10.13754 -10.06123 -9.82640 -9.80899 -9.61376 -9.25293 -8.04554 -7.69387 -7.17987 -4.93493 1.17403 2.05545 2.66889 2.83519 2.85637 2.89175 2.97165 3.07199 3.16739 3.60777 3.82912 4.14493 4.40021 4.56697 4.80308 4.89936 5.07923 5.18088 5.27702 5.42672 5.58244 5.62620 5.78147 5.82377 5.93275 6.02006 6.05412 6.23411 6.30170 6.35060 6.41915 6.59090 6.69198 6.82891 7.01998 7.18852 7.25387 7.36378 7.59650 7.78874 7.96809 8.11193 8.37435 8.42778 9.71869 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.016187 B = 0.004122 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.335103 B = 6791.130870 C = 7225.393099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.202 4.202 3 C 0.273 3.727 4 H 0.109 0.891 5 N -1.110 6.110 6 S 2.694 3.306 7 O -0.967 6.967 8 O -0.983 6.983 9 C -0.785 4.785 10 C 0.008 3.992 11 C -0.233 4.233 12 C 0.146 3.854 13 C -0.430 4.430 14 H 0.091 0.909 15 C 0.069 3.931 16 N -0.767 5.767 17 Si 0.922 3.078 18 H -0.263 1.263 19 H -0.273 1.273 20 H -0.258 1.258 21 C -0.163 4.163 22 C 0.082 3.918 23 Cl -0.103 7.103 24 C -0.092 4.092 25 C -0.147 4.147 26 C -0.149 4.149 27 H 0.213 0.787 28 H 0.413 0.587 29 H 0.116 0.884 30 H 0.106 0.894 31 H 0.291 0.709 32 H 0.134 0.866 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.350 -11.360 1.406 11.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.204 4.204 3 C 0.166 3.834 4 H 0.127 0.873 5 N -0.865 5.865 6 S 2.790 3.210 7 O -0.957 6.957 8 O -0.974 6.974 9 C -0.880 4.880 10 C -0.012 4.012 11 C -0.254 4.254 12 C 0.142 3.858 13 C -0.457 4.457 14 H 0.109 0.891 15 C -0.154 4.154 16 N -0.389 5.389 17 Si 0.745 3.255 18 H -0.188 1.188 19 H -0.198 1.198 20 H -0.181 1.181 21 C -0.184 4.184 22 C 0.054 3.946 23 Cl -0.074 7.074 24 C -0.112 4.112 25 C -0.205 4.205 26 C -0.206 4.206 27 H 0.229 0.771 28 H 0.247 0.753 29 H 0.134 0.866 30 H 0.124 0.876 31 H 0.103 0.897 32 H 0.151 0.849 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.214 -10.815 1.577 11.392 hybrid contribution -1.835 0.460 0.265 1.910 sum 1.379 -10.355 1.842 10.607 Atomic orbital electron populations 1.24831 0.95776 0.99006 0.99593 1.23297 0.94522 1.01350 1.01231 1.17550 0.83326 0.87209 0.95317 0.87329 1.55784 1.83136 1.29202 1.18334 1.01334 0.74374 0.72174 0.73089 1.93562 1.82510 1.64271 1.55389 1.93479 1.64812 1.84415 1.54659 1.29029 1.21522 1.34592 1.02814 1.20179 0.96815 0.92787 0.91430 1.21112 0.94455 1.11036 0.98757 1.17726 0.91296 0.85791 0.90960 1.19939 1.04521 1.20263 1.00973 0.89092 1.26160 1.00416 0.94740 0.94047 1.69783 1.36961 1.20990 1.11158 0.86066 0.80281 0.78662 0.80517 1.18793 1.19754 1.18145 1.21286 0.96749 1.04146 0.96239 1.19990 0.95263 0.98347 0.81020 1.98312 1.97842 1.95562 1.15679 1.21303 0.96396 0.93034 1.00444 1.21829 1.01621 0.97249 0.99793 1.21853 0.94208 1.01737 1.02844 0.77052 0.75332 0.86610 0.87592 0.89732 0.84858 0.90374 0.92219 0.92361 0.92112 0.92475 0.91949 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 19.25 29.55 0.57 -2.02 16 2 C -0.20 -3.08 11.62 -37.12 -0.43 -3.51 16 3 C 0.27 3.84 2.34 -70.72 -0.17 3.67 16 4 H 0.11 1.57 7.51 -51.92 -0.39 1.18 16 5 N -1.11 -17.08 4.37 -7.31 -0.03 -17.11 16 6 S 2.69 52.81 5.02 -107.50 -0.54 52.27 16 7 O -0.97 -21.19 16.52 -57.17 -0.94 -22.13 16 8 O -0.98 -20.26 16.30 -57.17 -0.93 -21.19 16 9 C -0.78 -17.22 5.90 -39.25 -0.23 -17.45 16 10 C 0.01 0.18 9.52 -39.67 -0.38 -0.20 16 11 C -0.23 -5.28 9.79 -38.87 -0.38 -5.66 16 12 C 0.15 3.56 5.55 -106.83 -0.59 2.97 16 13 C -0.43 -10.08 9.06 -37.74 -0.34 -10.42 16 14 H 0.09 2.00 7.87 -52.49 -0.41 1.59 16 15 C 0.07 1.53 5.24 -17.34 -0.09 1.44 16 16 N -0.77 -18.00 10.87 55.55 0.60 -17.39 16 17 Si 0.92 16.55 29.57 -169.99 -5.03 11.53 16 18 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 19 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 20 H -0.26 -4.56 7.11 56.52 0.40 -4.16 16 21 C -0.16 -3.97 8.43 -38.84 -0.33 -4.30 16 22 C 0.08 1.88 6.29 -39.58 -0.25 1.63 16 23 Cl -0.10 -2.11 26.40 -51.86 -1.37 -3.48 16 24 C -0.09 -1.00 2.60 -90.63 -0.24 -1.23 16 25 C -0.15 -1.41 8.94 37.16 0.33 -1.08 16 26 C -0.15 -1.52 9.03 37.16 0.34 -1.19 16 27 H 0.21 2.64 7.80 -54.09 -0.42 2.22 16 28 H 0.41 5.53 8.85 -34.47 -0.30 5.22 16 29 H 0.12 2.30 7.31 -52.48 -0.38 1.92 16 30 H 0.11 2.19 8.06 -52.49 -0.42 1.76 16 31 H 0.29 6.17 8.30 -40.82 -0.34 5.83 16 32 H 0.13 3.33 6.23 -52.49 -0.33 3.01 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.61 7.23 -51.93 -0.38 0.24 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.64 7.61 -51.93 -0.39 0.24 16 LS Contribution 361.41 15.07 5.45 5.45 Total: -1.00 -28.58 361.41 -9.66 -38.24 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -4.68 Total: 11.18 kcal Atomic # 6 Polarization: -35.17 SS G_CDS: -2.19 Total: -37.35 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.57 Total: -34.50 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -1.88 Total: -43.32 kcal Atomic # 14 Polarization: 16.55 SS G_CDS: -5.03 Total: 11.53 kcal Atomic # 16 Polarization: 52.81 SS G_CDS: -0.54 Total: 52.27 kcal Atomic # 17 Polarization: -2.11 SS G_CDS: -1.37 Total: -3.48 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.58 -9.66 -38.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491630153.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.233 kcal (2) G-P(sol) polarization free energy of solvation -28.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds