Wall clock time and date at job start Wed Apr 1 2020 00:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31591 * 122.23056 * 2 1 4 4 C 1.29951 * 117.13515 * 180.02562 * 3 2 1 5 5 N 1.38892 * 125.36502 * 180.02562 * 4 3 2 6 6 C 1.34769 * 120.00188 * 180.02562 * 5 4 3 7 7 O 1.21297 * 119.99970 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00510 * 180.02562 * 6 5 4 9 9 C 1.53005 * 110.53495 * 57.38228 * 8 6 5 10 10 C 1.54627 * 110.49116 * 179.97438 * 8 6 5 11 11 C 1.54476 * 101.76424 * 93.87868 * 10 8 6 12 12 N 1.46755 * 105.47483 * 25.41616 * 11 10 8 13 13 C 1.34424 * 111.30504 * 342.98562 * 12 11 10 14 14 O 1.21280 * 124.94844 * 180.44336 * 13 12 11 15 15 S 1.76147 * 109.27010 * 0.26608 * 4 3 2 16 16 C 1.34656 * 122.22804 * 180.02562 * 2 1 3 17 17 S 1.76202 * 125.93151 * 359.97438 * 16 2 1 18 18 C 1.76198 * 99.99949 * 179.97438 * 17 16 2 19 19 H 1.07996 * 119.99824 * 359.97438 * 18 17 16 20 20 C 1.38428 * 119.99671 * 180.02562 * 18 17 16 21 21 N 1.31810 * 120.00415 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99760 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47408 * 59.99495 * 22 20 18 24 24 H 1.48498 * 109.46931 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46773 * 299.99464 * 22 20 18 26 26 H 1.08994 * 109.47037 * 89.97063 * 1 2 3 27 27 H 1.08993 * 109.47190 * 209.97562 * 1 2 3 28 28 H 1.08999 * 109.46760 * 329.97462 * 1 2 3 29 29 H 0.97004 * 119.99899 * 0.02562 * 5 4 3 30 30 H 1.09010 * 109.46699 * 182.61639 * 9 8 6 31 31 H 1.08997 * 109.47420 * 302.61246 * 9 8 6 32 32 H 1.09001 * 109.46897 * 62.62286 * 9 8 6 33 33 H 1.09005 * 110.96879 * 212.00028 * 10 8 6 34 34 H 1.08997 * 110.96950 * 335.75941 * 10 8 6 35 35 H 1.08999 * 110.24071 * 144.41555 * 11 10 8 36 36 H 1.08996 * 110.24528 * 266.32562 * 11 10 8 37 37 H 0.97008 * 124.35283 * 162.98250 * 12 11 10 38 38 H 0.97000 * 120.00310 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5032 0.9977 -0.0005 5 7 4.4045 2.0545 -0.0001 6 6 5.7298 1.8099 -0.0012 7 8 6.1355 0.6668 -0.0022 8 6 6.7078 2.9564 -0.0002 9 6 6.4692 3.8643 1.2081 10 6 8.1611 2.4282 -0.0012 11 6 8.4916 2.4185 -1.5101 12 7 7.6128 3.4292 -2.1100 13 6 6.5992 3.7461 -1.2860 14 8 5.7244 4.5478 -1.5370 15 16 3.9346 -0.7101 -0.0088 16 6 2.2251 -1.1391 -0.0005 17 16 1.5696 -2.7746 -0.0006 18 6 3.0665 -3.7042 -0.0021 19 1 4.0186 -3.1945 -0.0031 20 6 3.0219 -5.0877 -0.0032 21 7 1.8599 -5.7098 -0.0025 22 14 4.6089 -6.0732 -0.0041 23 1 5.3989 -5.7405 1.2085 24 1 4.2907 -7.5237 -0.0057 25 1 5.3984 -5.7388 -1.2165 26 1 -0.3633 0.0005 -1.0276 27 1 -0.3633 -0.8901 0.5134 28 1 -0.3633 0.8898 0.5142 29 1 4.0801 2.9687 0.0010 30 1 7.1540 4.7114 1.1668 31 1 5.4414 4.2268 1.1929 32 1 6.6426 3.3014 2.1253 33 1 8.8227 3.1057 0.5388 34 1 8.2108 1.4223 0.4156 35 1 9.5365 2.6850 -1.6690 36 1 8.2845 1.4365 -1.9353 37 1 7.7463 3.8187 -2.9884 38 1 1.8287 -6.6793 -0.0036 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602089945.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:47 Heat of formation + Delta-G solvation = -57.695572 kcal Electronic energy + Delta-G solvation = -24728.746401 eV Core-core repulsion = 21015.862822 eV Total energy + Delta-G solvation = -3712.883579 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -42.59786 -40.73035 -39.98114 -37.59186 -36.23176 -34.81466 -34.36611 -32.01503 -29.79372 -28.81540 -27.72627 -26.86656 -25.62499 -23.34085 -22.80657 -22.06236 -20.65448 -19.65171 -19.18726 -18.53354 -18.40301 -17.47819 -17.07571 -17.00067 -16.90407 -16.04227 -15.83987 -15.46950 -15.17571 -14.97992 -14.93853 -14.78745 -14.40378 -13.78617 -13.58216 -13.50935 -13.42156 -13.29485 -13.27512 -13.05301 -12.87787 -12.46314 -12.32298 -12.23003 -12.14861 -12.04355 -11.44566 -11.34504 -11.06596 -10.80213 -10.51546 -10.50944 -10.20933 -9.55956 -8.56946 -8.38999 -6.30186 -0.30965 0.15071 0.75938 0.89296 1.19177 1.26249 1.37460 1.41208 1.52214 1.68252 1.94969 2.15147 2.25683 2.82584 3.01060 3.09343 3.14528 3.37598 3.67381 3.76145 3.99178 4.33785 4.40963 4.60671 4.63838 4.66120 4.73036 4.82729 4.92161 4.95933 5.02186 5.07120 5.09627 5.29206 5.43288 5.61173 5.75465 5.84942 6.01941 6.56639 6.82168 6.87192 7.02233 8.50572 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.014031 B = 0.003614 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.035538 B = 7746.809142 C = 9265.549401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.035 3.965 3 N -0.484 5.484 4 C 0.218 3.782 5 N -0.603 5.603 6 C 0.525 3.475 7 O -0.517 6.517 8 C -0.105 4.105 9 C -0.132 4.132 10 C -0.113 4.113 11 C 0.093 3.907 12 N -0.713 5.713 13 C 0.524 3.476 14 O -0.553 6.553 15 S 0.174 5.826 16 C -0.279 4.279 17 S 0.104 5.896 18 C -0.577 4.577 19 H 0.082 0.918 20 C 0.036 3.964 21 N -0.896 5.896 22 Si 0.986 3.014 23 H -0.262 1.262 24 H -0.265 1.265 25 H -0.264 1.264 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.430 0.570 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.132 0.868 34 H 0.103 0.897 35 H 0.126 0.874 36 H 0.068 0.932 37 H 0.424 0.576 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.920 17.874 0.239 23.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.107 4.107 3 N -0.206 5.206 4 C -0.154 4.154 5 N -0.253 5.253 6 C 0.311 3.689 7 O -0.392 6.392 8 C -0.112 4.112 9 C -0.190 4.190 10 C -0.151 4.151 11 C -0.030 4.030 12 N -0.368 5.368 13 C 0.308 3.692 14 O -0.431 6.431 15 S 0.419 5.581 16 C -0.515 4.515 17 S 0.352 5.648 18 C -0.726 4.726 19 H 0.100 0.900 20 C -0.172 4.172 21 N -0.531 5.531 22 Si 0.807 3.193 23 H -0.187 1.187 24 H -0.190 1.190 25 H -0.188 1.188 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.271 0.729 30 H 0.119 0.881 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.150 0.850 34 H 0.121 0.879 35 H 0.144 0.856 36 H 0.087 0.913 37 H 0.264 0.736 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 14.253 16.657 0.190 21.923 hybrid contribution 0.625 0.246 -0.544 0.865 sum 14.878 16.903 -0.354 22.521 Atomic orbital electron populations 1.20247 0.85651 1.03196 1.03068 1.19704 0.98465 0.84104 1.08411 1.66007 1.02919 1.31718 1.19980 1.24124 0.90218 0.93028 1.08073 1.42592 1.04360 1.08120 1.70246 1.20807 0.81581 0.91125 0.75427 1.90701 1.77074 1.23148 1.48243 1.21645 0.97291 0.93969 0.98257 1.21829 1.04143 0.98960 0.94057 1.22885 0.90006 1.05208 0.96996 1.22395 0.96402 0.91506 0.92717 1.46185 1.27672 1.42695 1.20263 1.20452 0.81421 0.81480 0.85866 1.90774 1.37186 1.36631 1.78475 1.85774 1.02144 0.97058 1.73145 1.28631 1.01709 1.06099 1.15018 1.82934 1.11277 0.85936 1.84692 1.23425 0.93825 0.94839 1.60477 0.89971 1.25906 1.01480 0.97401 0.92369 1.70087 1.26287 1.10808 1.45891 0.85169 0.77220 0.77174 0.79740 1.18692 1.18963 1.18842 0.90411 0.91104 0.89615 0.72895 0.88107 0.91673 0.89275 0.85034 0.87867 0.85569 0.91335 0.73560 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.18 10.02 71.24 0.71 -1.46 16 2 C 0.03 1.48 6.73 41.77 0.28 1.76 16 3 N -0.48 -19.74 10.55 -184.86 -1.95 -21.69 16 4 C 0.22 8.51 8.40 179.15 1.50 10.02 16 5 N -0.60 -18.50 5.27 -309.56 -1.63 -20.13 16 6 C 0.53 14.41 6.52 87.66 0.57 14.98 16 7 O -0.52 -17.11 12.99 -3.08 -0.04 -17.15 16 8 C -0.10 -1.87 0.75 -52.93 -0.04 -1.91 16 9 C -0.13 -1.73 8.32 71.98 0.60 -1.14 16 10 C -0.11 -1.27 6.02 31.65 0.19 -1.08 16 11 C 0.09 0.94 7.78 86.83 0.68 1.61 16 12 N -0.71 -10.02 6.24 -459.83 -2.87 -12.88 16 13 C 0.52 10.72 7.15 87.90 0.63 11.35 16 14 O -0.55 -15.13 17.87 -3.03 -0.05 -15.19 16 15 S 0.17 7.75 18.35 -56.49 -1.04 6.71 16 16 C -0.28 -13.24 6.67 67.00 0.45 -12.79 16 17 S 0.10 5.42 20.74 -56.49 -1.17 4.25 16 18 C -0.58 -32.29 9.26 67.87 0.63 -31.66 16 19 H 0.08 4.54 5.97 -2.91 -0.02 4.52 16 20 C 0.04 1.94 5.49 84.74 0.47 2.40 16 21 N -0.90 -50.46 13.22 21.59 0.29 -50.17 16 22 Si 0.99 42.25 29.55 68.60 2.03 44.27 16 23 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 24 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 25 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 26 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.07 2.51 7.37 -2.39 -0.02 2.49 16 28 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.43 11.61 8.12 -92.71 -0.75 10.85 16 30 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.06 0.98 7.44 -2.39 -0.02 0.96 16 32 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.13 0.57 7.91 -2.38 -0.02 0.55 16 34 H 0.10 1.48 6.96 -2.39 -0.02 1.46 16 35 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.42 4.54 8.96 -92.70 -0.83 3.71 16 38 H 0.28 14.65 8.32 -92.71 -0.77 13.88 16 Total: -1.00 -73.61 349.13 -0.21 -73.82 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -0.44 Total: 16.07 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: 6.67 Total: -7.92 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -6.16 Total: -104.87 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -0.09 Total: -32.34 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 16 Polarization: 13.17 SS G_CDS: -2.21 Total: 10.97 kcal Total: -73.61 -0.21 -73.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602089945.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.125 kcal (2) G-P(sol) polarization free energy of solvation -73.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds