Wall clock time and date at job start Tue Mar 31 2020 23:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86798 * 119.99753 * 2 1 4 4 H 1.48504 * 109.47205 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47220 * 299.99703 * 3 2 1 6 6 H 1.48496 * 109.47287 * 59.99887 * 3 2 1 7 7 C 1.39944 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99953 * 197.85833 * 7 2 1 9 9 C 1.41392 * 119.99965 * 17.86866 * 7 2 1 10 10 C 1.40734 * 120.24578 * 24.39330 * 9 7 2 11 11 C 1.37601 * 119.74418 * 179.97438 * 10 9 7 12 12 C 1.38659 * 120.24775 * 359.74084 * 11 10 9 13 13 C 1.38613 * 120.50001 * 0.51855 * 12 11 10 14 14 S 1.76201 * 119.87286 * 179.76199 * 13 12 11 15 15 O 1.42098 * 106.39922 * 156.18759 * 14 13 12 16 16 O 1.42103 * 106.40465 * 23.26192 * 14 13 12 17 17 N 1.65607 * 107.21654 * 269.72265 * 14 13 12 18 18 C 1.47426 * 125.65013 * 270.05451 * 17 14 13 19 19 C 1.54906 * 104.83058 * 155.82914 * 18 17 14 20 20 H 1.09001 * 111.03411 * 278.91826 * 19 18 17 21 21 O 1.42895 * 111.00486 * 155.08705 * 19 18 17 22 22 C 1.55150 * 101.58616 * 37.00476 * 19 18 17 23 23 C 1.47022 * 125.64574 * 90.00218 * 17 14 13 24 24 H 1.09002 * 109.88221 * 300.52308 * 23 17 14 25 25 C 1.50696 * 110.01252 * 61.61616 * 23 17 14 26 26 O 1.20827 * 119.99908 * 359.33440 * 25 23 17 27 27 O 1.34230 * 120.00088 * 179.33975 * 25 23 17 28 28 C 1.37634 * 120.25011 * 359.48740 * 13 12 11 29 29 H 0.97003 * 120.00316 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.12904 * 359.95982 * 10 9 7 31 31 H 1.07997 * 119.87375 * 180.02562 * 11 10 9 32 32 H 1.08003 * 119.74801 * 180.25345 * 12 11 10 33 33 H 1.08997 * 110.36170 * 36.98668 * 18 17 14 34 34 H 1.09000 * 110.36418 * 274.66169 * 18 17 14 35 35 H 0.96700 * 114.00515 * 67.79900 * 21 19 18 36 36 H 1.09001 * 110.71639 * 82.86412 * 22 19 18 37 37 H 1.08999 * 110.72473 * 206.13560 * 22 19 18 38 38 H 0.96706 * 116.99746 * 179.97438 * 27 25 23 39 39 H 1.07999 * 120.12630 * 180.23068 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8834 2.3965 1.2124 7 6 2.0080 -1.2120 0.0005 8 1 3.0490 -1.2343 0.2874 9 6 1.3522 -2.4071 -0.3746 10 6 0.2210 -2.3625 -1.2108 11 6 -0.4089 -3.5320 -1.5699 12 6 0.0700 -4.7514 -1.1155 13 6 1.1801 -4.8067 -0.2873 14 16 1.7708 -6.3648 0.2855 15 8 3.1441 -6.1817 0.6015 16 8 1.3099 -7.3353 -0.6445 17 7 1.0006 -6.6853 1.7161 18 6 1.4795 -6.2977 3.0554 19 6 0.2040 -6.2458 3.9330 20 1 -0.3287 -5.3051 3.7936 21 8 0.5215 -6.4522 5.3108 22 6 -0.6129 -7.4367 3.3660 23 6 -0.2747 -7.4025 1.8607 24 1 -1.0593 -6.8770 1.3163 25 6 -0.1386 -8.8078 1.3338 26 8 0.9128 -9.1795 0.8689 27 8 -1.1855 -9.6466 1.3810 28 6 1.8259 -3.6497 0.0848 29 1 -0.4851 0.8400 -0.0004 30 1 -0.1513 -1.4142 -1.5690 31 1 -1.2769 -3.5003 -2.2118 32 1 -0.4283 -5.6646 -1.4058 33 1 1.9552 -5.3177 3.0192 34 1 2.1746 -7.0439 3.4403 35 1 1.0317 -5.7336 5.7088 36 1 -0.2868 -8.3757 3.8132 37 1 -1.6802 -7.2828 3.5250 38 1 -1.0502 -10.5377 1.0308 39 1 2.6929 -3.6955 0.7272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794909683.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:03 Heat of formation + Delta-G solvation = -182.368264 kcal Electronic energy + Delta-G solvation = -28359.914383 eV Core-core repulsion = 24166.578968 eV Total energy + Delta-G solvation = -4193.335415 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.56551 -38.63494 -37.70567 -36.71433 -36.18002 -35.61669 -35.26257 -33.91264 -30.65699 -30.14656 -29.84981 -29.17771 -25.55192 -24.23788 -22.02656 -21.58392 -21.37308 -21.01890 -18.83902 -18.44639 -18.07996 -17.56527 -17.21540 -16.46380 -15.94768 -15.75246 -15.38754 -15.22089 -14.75938 -14.68926 -14.17033 -13.78332 -13.57740 -13.45030 -13.32388 -13.08192 -12.64002 -12.58650 -12.01061 -11.94148 -11.73815 -11.59536 -11.50988 -11.43227 -11.42191 -11.32053 -11.14279 -11.02232 -10.95665 -10.65701 -10.55072 -10.24028 -9.83024 -9.68921 -9.41817 -9.06126 -8.11180 -7.77795 -6.99573 -4.60401 0.81276 2.11963 2.22601 2.56053 2.82596 2.96295 2.99718 3.03093 3.30570 3.77941 3.93856 4.13151 4.28141 4.35451 4.46128 4.77239 4.91797 5.05854 5.09013 5.26641 5.32466 5.46137 5.56816 5.64365 5.84149 5.93668 5.95605 6.10578 6.24386 6.48870 6.58120 6.69619 6.82886 6.97786 7.14508 7.31078 7.40635 7.65840 7.74280 7.87380 7.89208 8.33726 8.60239 8.64947 9.95752 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.015191 B = 0.003839 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.705456 B = 7291.046044 C = 7970.624956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.911 3.089 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.460 4.460 8 H 0.084 0.916 9 C 0.092 3.908 10 C -0.117 4.117 11 C -0.119 4.119 12 C -0.149 4.149 13 C -0.635 4.635 14 S 2.701 3.299 15 O -0.961 6.961 16 O -0.950 6.950 17 N -0.991 5.991 18 C 0.089 3.911 19 C 0.093 3.907 20 H 0.087 0.913 21 O -0.557 6.557 22 C -0.105 4.105 23 C 0.166 3.834 24 H 0.122 0.878 25 C 0.461 3.539 26 O -0.482 6.482 27 O -0.516 6.516 28 C -0.127 4.127 29 H 0.283 0.717 30 H 0.126 0.874 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.386 0.614 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.410 0.590 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.669 -8.759 7.658 12.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.489 4.489 8 H 0.102 0.898 9 C 0.089 3.911 10 C -0.137 4.137 11 C -0.139 4.139 12 C -0.170 4.170 13 C -0.727 4.727 14 S 2.798 3.202 15 O -0.952 6.952 16 O -0.941 6.941 17 N -0.827 5.827 18 C -0.036 4.036 19 C 0.033 3.967 20 H 0.105 0.895 21 O -0.363 6.363 22 C -0.144 4.144 23 C 0.057 3.943 24 H 0.139 0.861 25 C 0.299 3.701 26 O -0.367 6.367 27 O -0.327 6.327 28 C -0.149 4.149 29 H 0.094 0.906 30 H 0.143 0.857 31 H 0.117 0.883 32 H 0.123 0.877 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.234 0.766 36 H 0.109 0.891 37 H 0.121 0.879 38 H 0.269 0.731 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.264 -9.422 7.140 12.568 hybrid contribution 0.289 1.400 -0.325 1.466 sum -3.975 -8.022 6.816 11.252 Atomic orbital electron populations 1.69781 1.07672 1.29615 1.34763 1.25937 0.94781 1.01585 0.91959 0.86208 0.81115 0.80476 0.78730 1.18171 1.19547 1.19816 1.19663 0.98409 0.90937 1.39870 0.89815 1.17689 0.91762 0.91958 0.89707 1.21656 0.97580 0.97193 0.97268 1.20816 0.99381 0.93065 1.00624 1.20070 0.97128 0.97305 1.02508 1.29888 1.09985 1.18232 1.14551 1.01621 0.73067 0.74246 0.71227 1.93520 1.30634 1.87417 1.83595 1.93545 1.81807 1.59112 1.59624 1.58738 1.33797 1.68452 1.21711 1.22746 0.97348 1.01895 0.81644 1.22996 0.94159 0.98453 0.81126 0.89466 1.86459 1.77108 1.49554 1.23134 1.22509 1.01868 0.99943 0.90061 1.20689 0.88258 0.86661 0.98701 0.86071 1.23738 0.81628 0.88560 0.76142 1.90774 1.29249 1.76532 1.40127 1.84476 1.42193 1.28009 1.78069 1.20770 1.00435 0.91614 1.02038 0.90568 0.85663 0.88278 0.87694 0.89117 0.90271 0.76618 0.89107 0.87912 0.73122 0.87120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.90 10.95 55.55 0.61 -18.29 16 2 C 0.08 1.77 5.14 -17.34 -0.09 1.68 16 3 Si 0.91 17.50 29.60 -169.99 -5.03 12.47 16 4 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 6 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.46 -11.45 9.05 -37.74 -0.34 -11.79 16 8 H 0.08 2.02 7.91 -52.48 -0.41 1.60 16 9 C 0.09 2.32 5.58 -106.82 -0.60 1.73 16 10 C -0.12 -2.84 8.70 -38.87 -0.34 -3.18 16 11 C -0.12 -2.62 10.02 -39.66 -0.40 -3.02 16 12 C -0.15 -3.19 9.53 -39.29 -0.37 -3.56 16 13 C -0.63 -13.83 5.97 -39.66 -0.24 -14.07 16 14 S 2.70 54.06 5.58 -107.50 -0.60 53.46 16 15 O -0.96 -21.35 16.85 -57.17 -0.96 -22.31 16 16 O -0.95 -20.67 14.12 -66.59 -0.94 -21.61 16 17 N -0.99 -15.52 3.14 -105.64 -0.33 -15.85 16 18 C 0.09 1.15 6.72 -2.53 -0.02 1.13 16 19 C 0.09 0.96 4.43 -24.59 -0.11 0.85 16 20 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 21 O -0.56 -5.26 13.47 -35.23 -0.47 -5.73 16 22 C -0.11 -1.05 6.17 -24.90 -0.15 -1.20 16 23 C 0.17 2.15 3.57 -68.11 -0.24 1.91 16 24 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 25 C 0.46 6.52 7.00 36.00 0.25 6.78 16 26 O -0.48 -8.77 14.62 -26.37 -0.39 -9.15 16 27 O -0.52 -5.28 13.39 -39.26 -0.53 -5.80 16 28 C -0.13 -2.99 9.26 -38.87 -0.36 -3.35 16 29 H 0.28 6.10 8.30 -40.82 -0.34 5.76 16 30 H 0.13 3.09 6.15 -52.49 -0.32 2.76 16 31 H 0.10 1.89 8.06 -52.49 -0.42 1.46 16 32 H 0.11 2.03 7.59 -52.48 -0.40 1.63 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.39 2.12 9.12 45.56 0.42 2.54 16 36 H 0.09 0.91 7.84 -51.93 -0.41 0.50 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.41 2.56 9.10 45.56 0.41 2.98 16 39 H 0.11 2.49 7.60 -52.49 -0.40 2.09 16 LS Contribution 346.58 15.07 5.22 5.22 Total: -1.00 -34.17 346.58 -9.21 -43.38 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -2.78 Total: 10.33 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: -3.00 Total: -26.11 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.28 Total: -34.15 kcal Atomic # 8 Polarization: -61.32 SS G_CDS: -3.29 Total: -64.61 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.47 kcal Atomic # 16 Polarization: 54.06 SS G_CDS: -0.60 Total: 53.46 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.17 -9.21 -43.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794909683.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.990 kcal (2) G-P(sol) polarization free energy of solvation -34.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds