Wall clock time and date at job start Tue Mar 31 2020 23:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36453 * 126.89412 * 2 1 4 4 C 1.46809 * 125.56055 * 359.91899 * 3 2 1 5 5 O 1.21677 * 119.99630 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00413 * 180.02562 * 4 3 2 7 7 S 1.65598 * 119.99840 * 180.02562 * 6 4 3 8 8 O 1.42102 * 104.27666 * 181.07214 * 7 6 4 9 9 O 1.42100 * 104.27828 * 308.92479 * 7 6 4 10 10 C 1.81399 * 104.45268 * 65.00008 * 7 6 4 11 11 C 1.50690 * 109.47248 * 179.97438 * 10 7 6 12 12 H 1.08001 * 120.00438 * 359.97438 * 11 10 7 13 13 C 1.37876 * 119.99975 * 180.02562 * 11 10 7 14 14 N 1.31513 * 120.00202 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 120.00153 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46749 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47455 * 119.99587 * 15 13 11 18 18 H 1.48500 * 109.47271 * 240.00150 * 15 13 11 19 19 O 1.35285 * 108.88954 * 179.97438 * 3 2 1 20 20 C 1.32615 * 109.96027 * 359.92242 * 19 3 2 21 21 C 1.39054 * 107.79450 * 0.13956 * 20 19 3 22 22 C 1.47177 * 121.80136 * 179.72433 * 21 20 19 23 23 O 1.21314 * 122.49686 * 168.66629 * 22 21 20 24 24 C 1.52171 * 115.05399 * 348.70526 * 22 21 20 25 25 C 1.53195 * 108.40668 * 42.54371 * 24 22 21 26 26 C 1.50745 * 129.37720 * 180.17731 * 20 19 3 27 27 H 1.08994 * 109.47594 * 90.02514 * 1 2 3 28 28 H 1.09003 * 109.47251 * 210.02472 * 1 2 3 29 29 H 1.09000 * 109.47048 * 330.02240 * 1 2 3 30 30 H 0.96993 * 119.99369 * 359.97438 * 6 4 3 31 31 H 1.08999 * 109.46662 * 300.00290 * 10 7 6 32 32 H 1.08997 * 109.46909 * 59.99712 * 10 7 6 33 33 H 0.96996 * 119.99957 * 179.97438 * 14 13 11 34 34 H 1.09002 * 109.68582 * 282.79949 * 24 22 21 35 35 H 1.08999 * 109.68176 * 162.28104 * 24 22 21 36 36 H 1.08994 * 109.23722 * 55.47689 * 25 24 22 37 37 H 1.09000 * 109.23047 * 174.88932 * 25 24 22 38 38 H 1.08999 * 109.50426 * 39.52875 * 26 20 19 39 39 H 1.08997 * 109.53807 * 279.42578 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3262 1.0913 0.0000 4 6 1.8836 2.4911 -0.0017 5 8 0.6955 2.7534 -0.0028 6 7 2.7933 3.4855 -0.0020 7 16 2.2939 5.0644 -0.0033 8 8 3.5011 5.8137 -0.0291 9 8 1.3637 5.1369 -1.0750 10 6 1.4490 5.2733 1.5883 11 6 0.9437 6.6880 1.7069 12 1 1.1141 7.3914 0.9052 13 6 0.2647 7.0848 2.8393 14 7 0.0575 6.2286 3.8158 15 14 -0.3624 8.8384 2.9861 16 1 -0.0031 9.5966 1.7609 17 1 -1.8388 8.8245 3.1451 18 1 0.2568 9.4881 4.1692 19 8 3.6128 0.6731 0.0006 20 6 3.6580 -0.6522 0.0026 21 6 2.3493 -1.1221 0.0002 22 6 2.0420 -2.5615 -0.0044 23 8 0.9247 -2.9900 0.1945 24 6 3.2297 -3.4731 -0.2763 25 6 4.4324 -2.9498 0.5154 26 6 4.8552 -1.5683 0.0076 27 1 -0.3634 -0.0005 -1.0276 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5135 30 1 3.7404 3.2763 -0.0008 31 1 0.6092 4.5809 1.6473 32 1 2.1470 5.0679 2.3998 33 1 -0.4199 6.5079 4.6126 34 1 3.4607 -3.4673 -1.3415 35 1 2.9939 -4.4883 0.0427 36 1 4.1648 -2.8784 1.5695 37 1 5.2656 -3.6434 0.4028 38 1 5.6238 -1.1591 0.6633 39 1 5.2500 -1.6577 -1.0044 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821584253.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:50 Heat of formation + Delta-G solvation = -173.159298 kcal Electronic energy + Delta-G solvation = -27470.346954 eV Core-core repulsion = 23277.410870 eV Total energy + Delta-G solvation = -4192.936084 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.24617 -41.14160 -40.24327 -38.18246 -37.14322 -36.87467 -35.97408 -35.47086 -35.17036 -31.19389 -31.08415 -29.94887 -28.87795 -25.74147 -25.26120 -24.00178 -22.95432 -21.33846 -20.82022 -20.58538 -19.36297 -18.98964 -18.41444 -18.04572 -17.51058 -17.28865 -16.79830 -16.50805 -16.30110 -16.15030 -15.97415 -15.79618 -15.55625 -15.10121 -14.59266 -14.47858 -14.26025 -14.17067 -13.91176 -13.77336 -13.74038 -13.50728 -13.28130 -13.26562 -13.17116 -12.77212 -12.66337 -12.59158 -12.23034 -12.12162 -11.94633 -11.86487 -11.72596 -11.16719 -10.97446 -10.81951 -10.75266 -9.73843 -8.44908 -6.64602 -0.86617 -0.43992 0.04583 1.08602 1.36507 1.37802 1.39417 1.50728 1.52945 1.82505 2.28326 2.65354 2.81173 2.89087 3.12337 3.22776 3.29937 3.48305 3.72944 3.93175 3.97230 3.98632 4.10362 4.32625 4.53307 4.55257 4.59397 4.61428 4.70044 4.72602 4.74576 4.94807 5.09192 5.11832 5.18153 5.26612 5.27855 5.31911 5.64527 5.68077 6.16997 6.45213 6.47750 7.07564 8.68312 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.019905 B = 0.002906 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.368046 B = 9634.111169 C =10176.493217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.021 4.021 3 C -0.131 4.131 4 C 0.626 3.374 5 O -0.502 6.502 6 N -1.038 6.038 7 S 2.599 3.401 8 O -0.971 6.971 9 O -0.978 6.978 10 C -0.420 4.420 11 C -0.567 4.567 12 H 0.071 0.929 13 C 0.025 3.975 14 N -0.908 5.908 15 Si 0.970 3.030 16 H -0.260 1.260 17 H -0.269 1.269 18 H -0.263 1.263 19 O -0.135 6.135 20 C 0.129 3.871 21 C -0.320 4.320 22 C 0.423 3.577 23 O -0.493 6.493 24 C -0.155 4.155 25 C -0.107 4.107 26 C -0.050 4.050 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.446 0.554 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.275 0.725 34 H 0.130 0.870 35 H 0.110 0.890 36 H 0.069 0.931 37 H 0.137 0.863 38 H 0.129 0.871 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.709 -22.592 -6.385 27.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.023 4.023 3 C -0.182 4.182 4 C 0.415 3.585 5 O -0.377 6.377 6 N -0.801 5.801 7 S 2.699 3.301 8 O -0.962 6.962 9 O -0.968 6.968 10 C -0.555 4.555 11 C -0.606 4.606 12 H 0.089 0.911 13 C -0.179 4.179 14 N -0.544 5.544 15 Si 0.792 3.208 16 H -0.184 1.184 17 H -0.194 1.194 18 H -0.187 1.187 19 O -0.029 6.029 20 C 0.071 3.929 21 C -0.323 4.323 22 C 0.304 3.696 23 O -0.371 6.371 24 C -0.192 4.192 25 C -0.144 4.144 26 C -0.086 4.086 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.285 0.715 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.148 0.852 35 H 0.128 0.872 36 H 0.087 0.913 37 H 0.155 0.845 38 H 0.147 0.853 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 13.618 -21.844 -6.858 26.639 hybrid contribution -0.700 0.820 0.849 1.372 sum 12.919 -21.024 -6.009 25.397 Atomic orbital electron populations 1.20550 0.87931 1.03811 1.03772 1.20524 0.97868 0.90809 0.93147 1.21046 0.81652 0.92944 1.22603 1.16609 0.84800 0.83339 0.73771 1.91049 1.16054 1.82755 1.47867 1.54903 1.19059 1.25944 1.80210 1.05582 0.74228 0.71634 0.78606 1.93508 1.46092 1.68086 1.88501 1.93498 1.65342 1.84398 1.53573 1.27663 1.08649 1.05460 1.13708 1.20748 1.40429 0.93776 1.05664 0.91133 1.25896 0.94506 1.03063 0.94393 1.70047 1.39921 1.37001 1.07480 0.85325 0.78542 0.77683 0.79286 1.18383 1.19428 1.18744 1.83653 1.27091 1.23053 1.69072 1.25137 0.98145 0.80134 0.89486 1.21411 0.93456 0.97170 1.20231 1.22795 0.90139 0.87045 0.69665 1.90548 1.27401 1.80008 1.39108 1.22474 0.92380 0.99407 1.04964 1.21656 0.98371 0.94665 0.99747 1.21020 0.89947 0.90107 1.07501 0.89479 0.89887 0.90689 0.71456 0.90108 0.89415 0.91604 0.85242 0.87180 0.91259 0.84476 0.85284 0.83938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.19 9.64 71.24 0.69 -2.50 16 2 C -0.02 -0.60 6.21 -19.78 -0.12 -0.72 16 3 C -0.13 -3.88 7.11 24.10 0.17 -3.71 16 4 C 0.63 22.87 7.53 86.48 0.65 23.52 16 5 O -0.50 -22.12 12.80 12.11 0.15 -21.96 16 6 N -1.04 -35.37 5.60 -176.30 -0.99 -36.36 16 7 S 2.60 115.18 5.03 -56.49 -0.28 114.89 16 8 O -0.97 -44.03 18.08 -127.65 -2.31 -46.34 16 9 O -0.98 -49.54 17.04 -120.72 -2.06 -51.59 16 10 C -0.42 -21.69 5.64 71.23 0.40 -21.28 16 11 C -0.57 -32.53 9.13 25.60 0.23 -32.30 16 12 H 0.07 3.93 7.71 -2.91 -0.02 3.91 16 13 C 0.02 1.41 5.46 84.65 0.46 1.87 16 14 N -0.91 -53.04 13.29 21.45 0.28 -52.76 16 15 Si 0.97 43.44 29.54 68.60 2.03 45.47 16 16 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 17 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 19 O -0.14 -2.92 10.30 2.60 0.03 -2.89 16 20 C 0.13 1.99 7.41 25.90 0.19 2.18 16 21 C -0.32 -7.02 6.10 -20.23 -0.12 -7.14 16 22 C 0.42 8.15 7.10 28.51 0.20 8.35 16 23 O -0.49 -13.61 16.88 -3.13 -0.05 -13.66 16 24 C -0.16 -0.98 6.16 30.39 0.19 -0.80 16 25 C -0.11 -0.13 5.80 30.71 0.18 0.05 16 26 C -0.05 -0.12 6.24 29.91 0.19 0.06 16 27 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.08 2.44 7.20 -2.39 -0.02 2.42 16 29 H 0.07 2.59 6.43 -2.39 -0.02 2.57 16 30 H 0.45 11.22 8.52 -96.75 -0.82 10.39 16 31 H 0.08 4.44 7.19 -2.39 -0.02 4.42 16 32 H 0.09 4.38 8.14 -2.39 -0.02 4.36 16 33 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 34 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.11 0.54 8.14 -2.39 -0.02 0.53 16 36 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 37 H 0.14 -0.77 8.14 -2.39 -0.02 -0.79 16 38 H 0.13 -0.13 8.14 -2.39 -0.02 -0.15 16 39 H 0.14 -0.41 8.14 -2.39 -0.02 -0.43 16 Total: -1.00 -85.72 349.88 0.41 -85.31 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.30 Total: 12.31 kcal Atomic # 6 Polarization: -35.73 SS G_CDS: 3.31 Total: -32.42 kcal Atomic # 7 Polarization: -88.42 SS G_CDS: -0.70 Total: -89.12 kcal Atomic # 8 Polarization: -132.21 SS G_CDS: -4.24 Total: -136.44 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: 115.18 SS G_CDS: -0.28 Total: 114.89 kcal Total: -85.72 0.41 -85.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821584253.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.847 kcal (2) G-P(sol) polarization free energy of solvation -85.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds