Wall clock time and date at job start Tue Mar 31 2020 23:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86800 * 119.99608 * 2 1 4 4 H 1.48493 * 109.47249 * 239.99672 * 3 2 1 5 5 H 1.48500 * 109.47388 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46794 * 119.99847 * 3 2 1 7 7 C 1.39899 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99450 * 196.70076 * 7 2 1 9 9 C 1.41125 * 120.00025 * 16.69624 * 7 2 1 10 10 C 1.40886 * 120.16288 * 25.51923 * 9 7 2 11 11 C 1.36349 * 119.82944 * 180.26648 * 10 9 7 12 12 C 1.39525 * 120.16977 * 359.46494 * 11 10 9 13 13 N 1.39093 * 119.83536 * 180.27345 * 12 11 10 14 14 C 1.34771 * 120.00144 * 34.38865 * 13 12 11 15 15 O 1.21703 * 120.00496 * 5.09820 * 14 13 12 16 16 C 1.46581 * 119.99886 * 185.10011 * 14 13 12 17 17 C 1.36310 * 125.21362 * 179.71978 * 16 14 13 18 18 C 1.38441 * 113.37761 * 179.84126 * 17 16 14 19 19 C 1.48479 * 122.78456 * 180.16239 * 18 17 16 20 20 N 1.34051 * 126.67247 * 359.97184 * 19 18 17 21 21 N 1.28985 * 107.26473 * 179.83314 * 20 19 18 22 22 N 1.28729 * 108.94564 * 0.43307 * 21 20 19 23 23 H 0.97001 * 125.34059 * 179.74390 * 22 21 20 24 24 N 1.28870 * 109.31471 * 359.72295 * 22 21 20 25 25 C 1.35933 * 114.42970 * 0.44306 * 18 17 16 26 26 S 1.70577 * 110.80031 * 359.75622 * 25 18 17 27 27 C 1.39523 * 120.32372 * 0.24503 * 12 11 10 28 28 C 1.36354 * 120.16690 * 0.02754 * 27 12 11 29 29 H 0.96997 * 120.00514 * 359.97438 * 1 2 3 30 30 H 1.07994 * 120.08478 * 0.02562 * 10 9 7 31 31 H 1.08007 * 119.91694 * 179.73008 * 11 10 9 32 32 H 0.96999 * 119.99533 * 214.38546 * 13 12 11 33 33 H 1.08003 * 123.31073 * 359.97438 * 17 16 14 34 34 H 1.07996 * 124.60069 * 179.75454 * 25 18 17 35 35 H 1.07997 * 119.91580 * 180.02562 * 27 12 11 36 36 H 1.08000 * 120.08699 * 180.02562 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0965 1.6965 -1.2124 5 1 1.2777 2.7465 0.0006 6 1 3.0964 1.6965 1.2126 7 6 2.0083 -1.2115 -0.0005 8 1 3.0542 -1.2313 0.2683 9 6 1.3473 -2.4078 -0.3522 10 6 0.2144 -2.3710 -1.1889 11 6 -0.4222 -3.5304 -1.5199 12 6 0.0522 -4.7522 -1.0414 13 7 -0.5992 -5.9312 -1.3881 14 6 -1.1643 -6.0561 -2.6052 15 8 -1.0256 -5.1756 -3.4339 16 6 -1.9461 -7.2524 -2.9311 17 6 -2.5660 -7.4859 -4.1224 18 6 -3.2346 -8.6974 -4.1656 19 6 -3.9778 -9.1633 -5.3635 20 7 -4.1081 -8.5123 -6.5281 21 7 -4.8220 -9.2553 -7.3041 22 7 -5.1464 -10.3290 -6.6725 23 1 -5.6853 -11.0507 -7.0326 24 7 -4.6426 -10.2947 -5.4868 25 6 -3.1591 -9.4224 -3.0182 26 16 -2.2339 -8.6021 -1.8431 27 6 1.1772 -4.7970 -0.2173 28 6 1.8209 -3.6453 0.1267 29 1 -0.4851 0.8400 0.0004 30 1 -0.1512 -1.4266 -1.5639 31 1 -1.2935 -3.5034 -2.1577 32 1 -0.6468 -6.6635 -0.7538 33 1 -2.5367 -6.7947 -4.9518 34 1 -3.6221 -10.3868 -2.8706 35 1 1.5390 -5.7464 0.1490 36 1 2.6919 -3.6816 0.7643 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822814252.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:25 Heat of formation + Delta-G solvation = 147.079498 kcal Electronic energy + Delta-G solvation = -24481.344128 eV Core-core repulsion = 20674.189062 eV Total energy + Delta-G solvation = -3807.155066 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.069 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.73271 -39.78210 -38.21177 -37.08460 -34.54491 -34.49176 -33.31167 -32.99156 -30.25855 -29.48023 -28.82271 -26.32877 -25.27550 -24.59821 -23.48442 -21.57384 -21.20240 -20.26033 -19.67846 -19.08870 -18.15663 -17.42494 -17.32971 -16.64615 -16.11162 -15.52904 -15.19235 -14.74583 -14.33063 -13.99720 -13.86521 -13.47720 -13.20045 -13.11752 -12.97094 -12.64247 -12.42173 -12.06585 -11.84477 -11.64929 -11.44893 -11.39725 -11.29136 -11.17182 -11.10162 -11.09277 -10.70296 -10.00934 -9.71084 -9.52662 -9.15400 -9.05587 -8.95506 -8.70392 -7.54272 -7.02083 -6.74877 -4.31415 0.16974 0.76910 1.15248 1.35636 1.51130 1.95409 2.53868 2.74121 3.06458 3.07538 3.09773 3.15600 3.38867 3.58860 3.68268 3.92913 3.96879 4.62462 4.68322 4.99124 5.06930 5.11410 5.19075 5.64911 5.69460 5.87510 6.00810 6.07087 6.13038 6.36936 6.73262 6.95575 7.02155 7.12859 7.25964 7.56807 7.64108 7.86488 7.91431 8.03871 8.15274 8.27744 8.59556 8.66738 8.86678 8.97632 10.16946 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.024960 B = 0.002078 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.520329 B =13473.324704 C =14318.651915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.456 4.456 8 H 0.078 0.922 9 C 0.107 3.893 10 C -0.155 4.155 11 C -0.082 4.082 12 C -0.010 4.010 13 N -0.641 5.641 14 C 0.570 3.430 15 O -0.512 6.512 16 C -0.250 4.250 17 C -0.034 4.034 18 C -0.044 4.044 19 C 0.244 3.756 20 N -0.262 5.262 21 N -0.048 5.048 22 N -0.230 5.230 23 H 0.475 0.525 24 N -0.297 5.297 25 C -0.205 4.205 26 S 0.250 5.750 27 C -0.100 4.100 28 C -0.215 4.215 29 H 0.282 0.718 30 H 0.121 0.879 31 H 0.102 0.898 32 H 0.390 0.610 33 H 0.166 0.834 34 H 0.179 0.821 35 H 0.091 0.909 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.704 -20.572 -5.519 23.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.485 4.485 8 H 0.097 0.903 9 C 0.104 3.896 10 C -0.174 4.174 11 C -0.102 4.102 12 C -0.102 4.102 13 N -0.284 5.284 14 C 0.356 3.644 15 O -0.389 6.389 16 C -0.370 4.370 17 C -0.066 4.066 18 C -0.062 4.062 19 C -0.038 4.038 20 N -0.135 5.135 21 N -0.043 5.043 22 N -0.075 5.075 23 H 0.329 0.671 24 N -0.149 5.149 25 C -0.346 4.346 26 S 0.517 5.483 27 C -0.121 4.121 28 C -0.235 4.235 29 H 0.093 0.907 30 H 0.139 0.861 31 H 0.120 0.880 32 H 0.224 0.776 33 H 0.183 0.817 34 H 0.196 0.804 35 H 0.109 0.891 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.619 -20.034 -5.204 22.824 hybrid contribution -0.492 -0.041 -0.957 1.077 sum -10.110 -20.074 -6.161 23.306 Atomic orbital electron populations 1.69828 1.07579 1.29481 1.34539 1.25945 0.94777 1.01423 0.92295 0.86337 0.80119 0.80114 0.79988 1.18754 1.20317 1.19010 1.19533 0.97718 0.91168 1.40078 0.90338 1.17683 0.91383 0.92107 0.88387 1.20980 0.99124 0.96735 1.00597 1.20417 0.99164 0.91244 0.99423 1.17088 0.98700 0.84099 1.10344 1.42782 1.54691 1.16908 1.13994 1.16855 0.80191 0.84863 0.82500 1.90861 1.59951 1.40549 1.47518 1.24674 1.10987 1.01702 0.99654 1.20540 0.93249 0.95183 0.97599 1.16180 1.03744 0.96150 0.90085 1.23091 0.98232 0.88109 0.94376 1.76182 1.13492 1.23014 1.00817 1.78952 1.10620 0.93435 1.21331 1.47709 1.35486 1.17428 1.06920 0.67080 1.74887 1.14802 1.22392 1.02861 1.25690 1.05676 1.05671 0.97594 1.83050 1.43245 1.08371 1.13604 1.20030 0.94379 0.97242 1.00401 1.20537 1.03520 0.92572 1.06895 0.90685 0.86125 0.87997 0.77606 0.81650 0.80407 0.89088 0.88522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.37 10.95 55.55 0.61 -19.76 16 2 C 0.07 1.85 5.15 -17.34 -0.09 1.76 16 3 Si 0.91 18.61 29.59 -169.99 -5.03 13.58 16 4 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.46 -11.96 9.04 -37.87 -0.34 -12.31 16 8 H 0.08 1.96 7.90 -52.48 -0.41 1.55 16 9 C 0.11 2.85 5.57 -106.80 -0.59 2.25 16 10 C -0.15 -4.12 8.63 -39.26 -0.34 -4.45 16 11 C -0.08 -2.05 8.57 -39.78 -0.34 -2.39 16 12 C -0.01 -0.23 6.27 -83.61 -0.52 -0.75 16 13 N -0.64 -11.40 5.29 -10.95 -0.06 -11.46 16 14 C 0.57 10.33 7.50 -12.90 -0.10 10.24 16 15 O -0.51 -11.39 14.53 5.19 0.08 -11.32 16 16 C -0.25 -3.43 6.42 -36.91 -0.24 -3.67 16 17 C -0.03 -0.45 9.75 -40.20 -0.39 -0.84 16 18 C -0.04 -0.50 5.81 -106.43 -0.62 -1.12 16 19 C 0.24 2.81 8.03 -156.30 -1.25 1.55 16 20 N -0.26 -3.32 12.46 32.16 0.40 -2.92 16 21 N -0.05 -0.49 13.47 60.35 0.81 0.32 16 22 N -0.23 -1.58 7.90 60.35 0.48 -1.11 16 23 H 0.48 0.83 8.96 -340.37 -3.05 -2.22 16 24 N -0.30 -2.74 12.30 32.17 0.40 -2.35 16 25 C -0.20 -1.83 10.72 29.91 0.32 -1.51 16 26 S 0.25 2.29 22.11 -107.50 -2.38 -0.09 16 27 C -0.10 -2.17 9.90 -39.78 -0.39 -2.57 16 28 C -0.22 -5.14 9.74 -39.26 -0.38 -5.53 16 29 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 30 H 0.12 3.33 6.18 -52.49 -0.32 3.01 16 31 H 0.10 2.53 6.46 -52.48 -0.34 2.19 16 32 H 0.39 5.44 7.91 -40.82 -0.32 5.12 16 33 H 0.17 2.36 8.05 -52.48 -0.42 1.94 16 34 H 0.18 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 338.94 15.07 5.11 5.11 Total: -1.00 -32.62 338.94 -10.15 -42.77 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -5.28 Total: 6.55 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -5.28 Total: -19.33 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 2.64 Total: -37.27 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.08 Total: -11.32 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -2.38 Total: -0.09 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.62 -10.15 -42.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822814252.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.848 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds