Wall clock time and date at job start Tue Mar 31 2020 23:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86800 * 119.99608 * 2 1 4 4 H 1.48493 * 109.47249 * 239.99672 * 3 2 1 5 5 H 1.48500 * 109.47388 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46794 * 119.99847 * 3 2 1 7 7 C 1.39899 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99450 * 196.70076 * 7 2 1 9 9 C 1.41125 * 120.00025 * 16.69624 * 7 2 1 10 10 C 1.40886 * 120.16288 * 25.51923 * 9 7 2 11 11 C 1.36349 * 119.82944 * 180.26648 * 10 9 7 12 12 C 1.39525 * 120.16977 * 359.46494 * 11 10 9 13 13 N 1.39093 * 119.83536 * 180.27345 * 12 11 10 14 14 C 1.34771 * 120.00144 * 34.38865 * 13 12 11 15 15 O 1.21703 * 120.00496 * 5.09820 * 14 13 12 16 16 C 1.46581 * 119.99886 * 185.10011 * 14 13 12 17 17 C 1.36310 * 125.21362 * 179.71978 * 16 14 13 18 18 C 1.38441 * 113.37761 * 179.84126 * 17 16 14 19 19 C 1.48479 * 122.78456 * 180.16239 * 18 17 16 20 20 N 1.34051 * 126.67247 * 359.97184 * 19 18 17 21 21 N 1.28985 * 107.26473 * 179.83314 * 20 19 18 22 22 N 1.28729 * 108.94564 * 0.43307 * 21 20 19 23 23 H 0.97001 * 125.34059 * 179.74390 * 22 21 20 24 24 N 1.28870 * 109.31471 * 359.72295 * 22 21 20 25 25 C 1.35933 * 114.42970 * 0.44306 * 18 17 16 26 26 S 1.70577 * 110.80031 * 359.75622 * 25 18 17 27 27 C 1.39523 * 120.32372 * 0.24503 * 12 11 10 28 28 C 1.36354 * 120.16690 * 0.02754 * 27 12 11 29 29 H 0.96997 * 120.00514 * 359.97438 * 1 2 3 30 30 H 1.07994 * 120.08478 * 0.02562 * 10 9 7 31 31 H 1.08007 * 119.91694 * 179.73008 * 11 10 9 32 32 H 0.96999 * 119.99533 * 214.38546 * 13 12 11 33 33 H 1.08003 * 123.31073 * 359.97438 * 17 16 14 34 34 H 1.07996 * 124.60069 * 179.75454 * 25 18 17 35 35 H 1.07997 * 119.91580 * 180.02562 * 27 12 11 36 36 H 1.08000 * 120.08699 * 180.02562 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0965 1.6965 -1.2124 5 1 1.2777 2.7465 0.0006 6 1 3.0964 1.6965 1.2126 7 6 2.0083 -1.2115 -0.0005 8 1 3.0542 -1.2313 0.2683 9 6 1.3473 -2.4078 -0.3522 10 6 0.2144 -2.3710 -1.1889 11 6 -0.4222 -3.5304 -1.5199 12 6 0.0522 -4.7522 -1.0414 13 7 -0.5992 -5.9312 -1.3881 14 6 -1.1643 -6.0561 -2.6052 15 8 -1.0256 -5.1756 -3.4339 16 6 -1.9461 -7.2524 -2.9311 17 6 -2.5660 -7.4859 -4.1224 18 6 -3.2346 -8.6974 -4.1656 19 6 -3.9778 -9.1633 -5.3635 20 7 -4.1081 -8.5123 -6.5281 21 7 -4.8220 -9.2553 -7.3041 22 7 -5.1464 -10.3290 -6.6725 23 1 -5.6853 -11.0507 -7.0326 24 7 -4.6426 -10.2947 -5.4868 25 6 -3.1591 -9.4224 -3.0182 26 16 -2.2339 -8.6021 -1.8431 27 6 1.1772 -4.7970 -0.2173 28 6 1.8209 -3.6453 0.1267 29 1 -0.4851 0.8400 0.0004 30 1 -0.1512 -1.4266 -1.5639 31 1 -1.2935 -3.5034 -2.1577 32 1 -0.6468 -6.6635 -0.7538 33 1 -2.5367 -6.7947 -4.9518 34 1 -3.6221 -10.3868 -2.8706 35 1 1.5390 -5.7464 0.1490 36 1 2.6919 -3.6816 0.7643 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822814252.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:24 Heat of formation + Delta-G solvation = 124.828858 kcal Electronic energy + Delta-G solvation = -24482.308988 eV Core-core repulsion = 20674.189062 eV Total energy + Delta-G solvation = -3808.119926 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.069 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.48137 -41.28603 -39.42715 -38.63302 -36.23690 -35.29644 -34.79175 -34.09127 -31.64204 -31.28605 -30.35546 -27.39619 -26.71826 -25.40087 -24.76014 -23.25614 -22.71551 -21.62061 -20.80190 -19.95322 -19.37858 -19.19783 -18.16718 -18.07378 -17.16891 -17.09396 -16.59199 -16.22739 -15.74975 -15.25575 -15.11314 -14.97945 -14.46848 -14.25313 -14.07252 -13.98387 -13.89884 -13.64880 -13.26337 -13.20596 -12.92263 -12.76412 -12.43222 -12.40338 -12.22794 -12.15469 -11.92428 -11.75357 -11.51442 -11.24104 -10.95651 -10.70782 -10.01586 -9.48900 -9.45410 -8.86855 -8.59708 -6.26795 -0.71653 -0.00592 0.30097 0.42048 0.64357 0.87939 1.15905 1.39397 1.42799 1.49192 1.52629 1.72134 2.17002 2.17864 2.22350 2.73536 2.76787 3.16996 3.71368 3.78598 3.97877 4.16843 4.28914 4.40402 4.44208 4.46727 4.73571 4.94462 4.96262 5.03851 5.11389 5.18014 5.29384 5.41030 5.61212 5.68000 5.85403 6.06013 6.10640 6.33243 6.60644 6.68265 6.92930 6.99633 7.10076 7.26763 8.33778 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.024960 B = 0.002078 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.520329 B =13473.324704 C =14318.651915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.030 3.970 3 Si 0.984 3.016 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.254 1.254 7 C -0.491 4.491 8 H 0.083 0.917 9 C 0.074 3.926 10 C -0.180 4.180 11 C -0.097 4.097 12 C 0.003 3.997 13 N -0.635 5.635 14 C 0.573 3.427 15 O -0.565 6.565 16 C -0.295 4.295 17 C -0.030 4.030 18 C -0.066 4.066 19 C 0.231 3.769 20 N -0.303 5.303 21 N -0.058 5.058 22 N -0.197 5.197 23 H 0.496 0.504 24 N -0.286 5.286 25 C -0.177 4.177 26 S 0.342 5.658 27 C -0.094 4.094 28 C -0.222 4.222 29 H 0.288 0.712 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.413 0.587 33 H 0.141 0.859 34 H 0.213 0.787 35 H 0.138 0.862 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.982 -24.073 -4.250 26.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.185 4.185 3 Si 0.804 3.196 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.178 1.178 7 C -0.520 4.520 8 H 0.101 0.899 9 C 0.072 3.928 10 C -0.200 4.200 11 C -0.118 4.118 12 C -0.090 4.090 13 N -0.279 5.279 14 C 0.361 3.639 15 O -0.445 6.445 16 C -0.415 4.415 17 C -0.063 4.063 18 C -0.083 4.083 19 C -0.051 4.051 20 N -0.175 5.175 21 N -0.053 5.053 22 N -0.049 5.049 23 H 0.355 0.645 24 N -0.140 5.140 25 C -0.319 4.319 26 S 0.611 5.389 27 C -0.114 4.114 28 C -0.242 4.242 29 H 0.098 0.902 30 H 0.115 0.885 31 H 0.108 0.892 32 H 0.250 0.750 33 H 0.159 0.841 34 H 0.230 0.770 35 H 0.156 0.844 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.918 -23.599 -3.924 25.897 hybrid contribution -0.566 0.709 -1.399 1.668 sum -10.484 -22.890 -5.324 25.733 Atomic orbital electron populations 1.69904 1.09128 1.30619 1.35441 1.26838 0.95508 1.04788 0.91320 0.85224 0.78716 0.75476 0.80139 1.18743 1.19465 1.17804 1.19806 0.98120 0.92203 1.41912 0.89937 1.18028 0.91871 0.93741 0.89178 1.20866 1.00520 0.96468 1.02190 1.20445 0.99117 0.92310 0.99880 1.17153 0.98476 0.84652 1.08745 1.42615 1.54389 1.16192 1.14691 1.17407 0.79304 0.85504 0.81678 1.90832 1.61665 1.43005 1.49037 1.24200 1.12712 1.02678 1.01889 1.20461 0.93245 0.95729 0.96902 1.16068 1.04972 0.95952 0.91300 1.23153 0.98946 0.88708 0.94280 1.76171 1.15010 1.24476 1.01830 1.78892 1.10869 0.94153 1.21339 1.47785 1.33989 1.17077 1.06037 0.64495 1.74833 1.14396 1.21321 1.03409 1.26163 1.03376 1.06069 0.96288 1.82708 1.41143 1.04358 1.10740 1.20411 0.93273 0.98536 0.99203 1.20826 1.04113 0.92407 1.06810 0.90191 0.88521 0.89181 0.74971 0.84123 0.77012 0.84412 0.86839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.60 10.95 21.82 0.24 -44.36 16 2 C 0.03 1.56 5.15 85.24 0.44 2.00 16 3 Si 0.98 38.97 29.59 68.60 2.03 41.00 16 4 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 5 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 6 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 7 C -0.49 -26.70 9.04 23.38 0.21 -26.48 16 8 H 0.08 4.23 7.90 -2.91 -0.02 4.21 16 9 C 0.07 4.10 5.57 -21.27 -0.12 3.98 16 10 C -0.18 -10.20 8.63 22.48 0.19 -10.00 16 11 C -0.10 -5.07 8.57 22.14 0.19 -4.88 16 12 C 0.00 0.13 6.27 38.61 0.24 0.37 16 13 N -0.63 -21.83 5.29 -306.77 -1.62 -23.46 16 14 C 0.57 20.93 7.50 86.42 0.65 21.57 16 15 O -0.56 -26.50 14.53 -4.36 -0.06 -26.56 16 16 C -0.29 -7.83 6.42 24.00 0.15 -7.68 16 17 C -0.03 -0.79 9.75 21.87 0.21 -0.58 16 18 C -0.07 -1.39 5.81 -21.03 -0.12 -1.51 16 19 C 0.23 5.01 8.03 137.39 1.10 6.11 16 20 N -0.30 -7.64 12.46 -52.17 -0.65 -8.29 16 21 N -0.06 -1.12 13.47 37.02 0.50 -0.62 16 22 N -0.20 -2.29 7.90 37.02 0.29 -2.00 16 23 H 0.50 0.39 8.96 -347.54 -3.12 -2.73 16 24 N -0.29 -4.54 12.30 -52.12 -0.64 -5.18 16 25 C -0.18 -2.45 10.72 67.28 0.72 -1.73 16 26 S 0.34 4.94 22.11 -56.49 -1.25 3.69 16 27 C -0.09 -3.93 9.90 22.14 0.22 -3.71 16 28 C -0.22 -10.55 9.74 22.48 0.22 -10.33 16 29 H 0.29 14.14 8.30 -92.71 -0.77 13.37 16 30 H 0.10 5.79 6.18 -2.91 -0.02 5.78 16 31 H 0.09 4.80 6.46 -2.91 -0.02 4.79 16 32 H 0.41 10.29 7.91 -92.71 -0.73 9.56 16 33 H 0.14 4.37 8.05 -2.91 -0.02 4.35 16 34 H 0.21 1.52 8.06 -2.91 -0.02 1.50 16 35 H 0.14 4.42 8.06 -2.91 -0.02 4.39 16 36 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -76.95 338.94 0.49 -76.46 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: -2.65 Total: 22.18 kcal Atomic # 6 Polarization: -37.18 SS G_CDS: 4.31 Total: -32.87 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -1.88 Total: -83.91 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.06 Total: -26.56 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Atomic # 16 Polarization: 4.94 SS G_CDS: -1.25 Total: 3.69 kcal Total: -76.95 0.49 -76.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822814252.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.288 kcal (2) G-P(sol) polarization free energy of solvation -76.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds