Wall clock time and date at job start Tue Mar 31 2020 23:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99938 * 2 1 4 4 H 1.48504 * 109.46945 * 239.99886 * 3 2 1 5 5 H 1.48496 * 109.47353 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47293 * 120.00134 * 3 2 1 7 7 C 1.37874 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00230 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99890 * 359.97438 * 7 2 1 10 10 S 1.81401 * 109.47140 * 180.02562 * 9 7 2 11 11 O 1.42102 * 110.54326 * 68.37786 * 10 9 7 12 12 O 1.42097 * 110.54474 * 291.62389 * 10 9 7 13 13 N 1.65608 * 104.44945 * 179.97438 * 10 9 7 14 14 C 1.34772 * 119.99575 * 65.00158 * 13 10 9 15 15 O 1.21278 * 120.00468 * 359.97438 * 14 13 10 16 16 C 1.50706 * 119.99858 * 180.02562 * 14 13 10 17 17 C 1.53000 * 109.47129 * 180.02562 * 16 14 13 18 18 H 1.08996 * 109.70854 * 54.99132 * 17 16 14 19 19 C 1.53475 * 109.70707 * 175.57781 * 17 16 14 20 20 O 1.43169 * 108.23601 * 179.38083 * 19 17 16 21 21 C 1.36104 * 116.72608 * 313.81723 * 20 19 17 22 22 C 1.38707 * 119.38706 * 197.14847 * 21 20 19 23 23 C 1.38192 * 120.06029 * 180.18654 * 22 21 20 24 24 C 1.38252 * 120.11693 * 359.97438 * 23 22 21 25 25 C 1.38198 * 120.11247 * 359.95009 * 24 23 22 26 26 C 1.38702 * 120.06639 * 0.02562 * 25 24 23 27 27 O 1.36107 * 119.39517 * 180.16006 * 26 25 24 28 28 H 0.97004 * 119.99856 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47493 * 60.00337 * 9 7 2 30 30 H 1.09006 * 109.47122 * 300.00170 * 9 7 2 31 31 H 0.96999 * 120.00176 * 245.00119 * 13 10 9 32 32 H 1.08998 * 109.46534 * 299.99469 * 16 14 13 33 33 H 1.08995 * 109.47126 * 59.99109 * 16 14 13 34 34 H 1.09000 * 109.70830 * 299.12290 * 19 17 16 35 35 H 1.09004 * 109.70830 * 59.75075 * 19 17 16 36 36 H 1.07998 * 119.96507 * 0.16920 * 22 21 20 37 37 H 1.08003 * 119.94288 * 179.97438 * 23 22 21 38 38 H 1.08001 * 119.94093 * 179.97438 * 24 23 22 39 39 H 1.08002 * 119.96615 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 16 2.4299 -3.8779 -0.0005 11 8 3.1266 -3.9383 1.2365 12 8 3.1266 -3.9383 -1.2375 13 7 1.4795 -5.2341 0.0002 14 6 0.6885 -5.5031 -1.0573 15 8 0.6724 -4.7518 -2.0093 16 6 -0.1768 -6.7370 -1.0565 17 6 -0.9686 -6.8055 -2.3639 18 1 -0.2843 -6.7578 -3.2110 19 6 -1.7675 -8.1149 -2.4171 20 8 -2.5059 -8.1396 -3.6434 21 6 -3.1777 -7.0037 -3.9765 22 6 -4.1804 -7.0617 -4.9331 23 6 -4.8687 -5.9161 -5.2846 24 6 -4.5605 -4.7097 -4.6838 25 6 -3.5637 -4.6454 -3.7288 26 6 -2.8692 -5.7915 -3.3710 27 8 -1.8923 -5.7132 -2.4266 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5570 0.8897 31 1 1.4921 -5.8348 0.7617 32 1 0.4528 -7.6221 -0.9667 33 1 -0.8677 -6.6956 -0.2145 34 1 -1.0847 -8.9638 -2.3809 35 1 -2.4560 -8.1599 -1.5733 36 1 -4.4231 -8.0029 -5.4038 37 1 -5.6489 -5.9633 -6.0300 38 1 -5.1000 -3.8161 -4.9610 39 1 -3.3251 -3.7018 -3.2607 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835409213.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:47 Heat of formation + Delta-G solvation = -158.114787 kcal Electronic energy + Delta-G solvation = -27527.539092 eV Core-core repulsion = 23335.255387 eV Total energy + Delta-G solvation = -4192.283705 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.45886 -39.81108 -37.80108 -37.31270 -36.27094 -35.20378 -34.17458 -33.35232 -33.13059 -30.74623 -29.37993 -29.05475 -27.54232 -24.28655 -23.53513 -22.84290 -21.59032 -20.66562 -19.27179 -18.96903 -17.89377 -17.49090 -17.12961 -16.91441 -16.42914 -15.81958 -15.40694 -15.32837 -15.16984 -14.76062 -14.64941 -14.47021 -14.24823 -13.96442 -13.94986 -13.85241 -13.10743 -12.56177 -12.41906 -12.17779 -12.06601 -11.99028 -11.82538 -11.48022 -11.33372 -11.32276 -11.22891 -11.12280 -10.88816 -10.67367 -10.58181 -10.51705 -10.04226 -9.82306 -9.17933 -8.72930 -8.69962 -8.15244 -6.32466 -4.44101 1.00538 1.21181 1.23287 2.32629 2.85658 3.00037 3.11540 3.24574 3.26953 3.31543 3.64746 3.86538 4.22514 4.26033 4.36121 4.53573 4.55956 4.65035 4.86384 4.90816 4.95240 4.99374 5.04319 5.15857 5.17445 5.25746 5.34211 5.37773 5.44975 5.77649 6.06197 6.11753 6.39100 6.53958 6.56835 6.75702 6.80855 6.95767 7.34594 7.41107 7.69910 7.75432 8.56754 9.23253 10.79110 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.012913 B = 0.003405 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.829616 B = 8220.460035 C =10038.443700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.078 3.922 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.537 4.537 8 H 0.070 0.930 9 C -0.402 4.402 10 S 2.553 3.447 11 O -0.970 6.970 12 O -0.953 6.953 13 N -1.061 6.061 14 C 0.532 3.468 15 O -0.472 6.472 16 C -0.137 4.137 17 C 0.063 3.937 18 H 0.098 0.902 19 C 0.028 3.972 20 O -0.307 6.307 21 C 0.042 3.958 22 C -0.116 4.116 23 C -0.122 4.122 24 C -0.114 4.114 25 C -0.110 4.110 26 C 0.062 3.938 27 O -0.288 6.288 28 H 0.269 0.731 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.424 0.576 32 H 0.125 0.875 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.079 0.921 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.945 -17.610 -4.215 20.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.128 4.128 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.576 4.576 8 H 0.088 0.912 9 C -0.539 4.539 10 S 2.655 3.345 11 O -0.960 6.960 12 O -0.943 6.943 13 N -0.821 5.821 14 C 0.317 3.683 15 O -0.342 6.342 16 C -0.178 4.178 17 C 0.005 3.995 18 H 0.116 0.884 19 C -0.048 4.048 20 O -0.221 6.221 21 C -0.003 4.003 22 C -0.135 4.135 23 C -0.141 4.141 24 C -0.133 4.133 25 C -0.129 4.129 26 C 0.016 3.984 27 O -0.202 6.202 28 H 0.079 0.921 29 H 0.117 0.883 30 H 0.103 0.897 31 H 0.258 0.742 32 H 0.143 0.857 33 H 0.135 0.865 34 H 0.141 0.859 35 H 0.097 0.903 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.109 -17.052 -4.915 19.947 hybrid contribution -0.075 0.587 0.655 0.883 sum -9.184 -16.464 -4.261 19.328 Atomic orbital electron populations 1.69951 1.06247 1.27844 1.47103 1.24912 0.95032 0.99539 0.93366 0.86408 0.79632 0.81323 0.79456 1.19365 1.20647 1.19414 1.20240 0.92684 0.88509 1.56190 0.91219 1.27579 1.09786 1.09074 1.07436 1.07151 0.77277 0.76008 0.74031 1.93519 1.71231 1.85972 1.45303 1.93528 1.70857 1.85223 1.44728 1.55499 1.56196 1.43964 1.26447 1.20186 0.79004 0.87618 0.81540 1.90962 1.62659 1.48089 1.32474 1.21812 0.99019 0.98297 0.98718 1.22892 0.90689 0.86191 0.99730 0.88440 1.23660 0.95811 0.98919 0.86443 1.86285 1.62661 1.33261 1.39899 1.18926 0.96430 0.84732 1.00211 1.20385 0.94730 0.99773 0.98594 1.20889 1.00377 0.91957 1.00835 1.20955 0.97582 0.98274 0.96444 1.20621 0.96912 0.96886 0.98480 1.18980 0.92350 0.93162 0.93876 1.86450 1.38674 1.43495 1.51582 0.92095 0.88276 0.89748 0.74188 0.85705 0.86482 0.85859 0.90258 0.85074 0.85260 0.85060 0.84283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.13 13.29 55.43 0.74 -24.40 16 2 C 0.08 2.19 5.46 -17.82 -0.10 2.10 16 3 Si 0.91 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -15.10 9.13 -34.44 -0.31 -15.42 16 8 H 0.07 1.91 7.71 -52.48 -0.40 1.50 16 9 C -0.40 -10.01 5.64 36.00 0.20 -9.81 16 10 S 2.55 54.46 5.03 -107.50 -0.54 53.92 16 11 O -0.97 -21.81 18.08 -57.54 -1.04 -22.85 16 12 O -0.95 -23.50 17.04 -64.78 -1.10 -24.60 16 13 N -1.06 -15.87 5.60 31.22 0.17 -15.70 16 14 C 0.53 8.16 7.46 -10.98 -0.08 8.08 16 15 O -0.47 -9.65 13.56 -20.42 -0.28 -9.93 16 16 C -0.14 -1.27 5.43 -27.88 -0.15 -1.42 16 17 C 0.06 0.72 2.55 -26.49 -0.07 0.65 16 18 H 0.10 1.24 7.96 -51.93 -0.41 0.83 16 19 C 0.03 0.24 6.56 37.40 0.25 0.48 16 20 O -0.31 -3.58 10.42 -32.85 -0.34 -3.92 16 21 C 0.04 0.54 6.49 -39.14 -0.25 0.28 16 22 C -0.12 -1.26 9.96 -39.43 -0.39 -1.66 16 23 C -0.12 -1.20 10.04 -39.59 -0.40 -1.60 16 24 C -0.11 -1.25 10.04 -39.59 -0.40 -1.64 16 25 C -0.11 -1.50 9.96 -39.42 -0.39 -1.89 16 26 C 0.06 0.89 6.49 -39.14 -0.25 0.63 16 27 O -0.29 -4.36 9.36 -44.09 -0.41 -4.77 16 28 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.10 2.61 7.19 -51.93 -0.37 2.24 16 30 H 0.08 2.03 8.14 -51.92 -0.42 1.60 16 31 H 0.42 4.26 8.79 -34.48 -0.30 3.96 16 32 H 0.13 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.12 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 38 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 351.36 15.07 5.29 5.29 Total: -1.00 -38.80 351.36 -9.32 -48.12 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -4.43 Total: 3.85 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: -2.35 Total: -21.22 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 0.91 Total: -40.09 kcal Atomic # 8 Polarization: -62.90 SS G_CDS: -3.18 Total: -66.07 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 54.46 SS G_CDS: -0.54 Total: 53.92 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -38.80 -9.32 -48.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835409213.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.997 kcal (2) G-P(sol) polarization free energy of solvation -38.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds