Wall clock time and date at job start Tue Mar 31 2020 23:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99938 * 2 1 4 4 H 1.48504 * 109.46945 * 239.99886 * 3 2 1 5 5 H 1.48496 * 109.47353 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47293 * 120.00134 * 3 2 1 7 7 C 1.37874 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00230 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99890 * 359.97438 * 7 2 1 10 10 S 1.81401 * 109.47140 * 180.02562 * 9 7 2 11 11 O 1.42102 * 110.54326 * 68.37786 * 10 9 7 12 12 O 1.42097 * 110.54474 * 291.62389 * 10 9 7 13 13 N 1.65608 * 104.44945 * 179.97438 * 10 9 7 14 14 C 1.34772 * 119.99575 * 65.00158 * 13 10 9 15 15 O 1.21278 * 120.00468 * 359.97438 * 14 13 10 16 16 C 1.50706 * 119.99858 * 180.02562 * 14 13 10 17 17 C 1.53000 * 109.47129 * 180.02562 * 16 14 13 18 18 H 1.08996 * 109.70854 * 54.99132 * 17 16 14 19 19 C 1.53475 * 109.70707 * 175.57781 * 17 16 14 20 20 O 1.43169 * 108.23601 * 179.38083 * 19 17 16 21 21 C 1.36104 * 116.72608 * 313.81723 * 20 19 17 22 22 C 1.38707 * 119.38706 * 197.14847 * 21 20 19 23 23 C 1.38192 * 120.06029 * 180.18654 * 22 21 20 24 24 C 1.38252 * 120.11693 * 359.97438 * 23 22 21 25 25 C 1.38198 * 120.11247 * 359.95009 * 24 23 22 26 26 C 1.38702 * 120.06639 * 0.02562 * 25 24 23 27 27 O 1.36107 * 119.39517 * 180.16006 * 26 25 24 28 28 H 0.97004 * 119.99856 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47493 * 60.00337 * 9 7 2 30 30 H 1.09006 * 109.47122 * 300.00170 * 9 7 2 31 31 H 0.96999 * 120.00176 * 245.00119 * 13 10 9 32 32 H 1.08998 * 109.46534 * 299.99469 * 16 14 13 33 33 H 1.08995 * 109.47126 * 59.99109 * 16 14 13 34 34 H 1.09000 * 109.70830 * 299.12290 * 19 17 16 35 35 H 1.09004 * 109.70830 * 59.75075 * 19 17 16 36 36 H 1.07998 * 119.96507 * 0.16920 * 22 21 20 37 37 H 1.08003 * 119.94288 * 179.97438 * 23 22 21 38 38 H 1.08001 * 119.94093 * 179.97438 * 24 23 22 39 39 H 1.08002 * 119.96615 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 16 2.4299 -3.8779 -0.0005 11 8 3.1266 -3.9383 1.2365 12 8 3.1266 -3.9383 -1.2375 13 7 1.4795 -5.2341 0.0002 14 6 0.6885 -5.5031 -1.0573 15 8 0.6724 -4.7518 -2.0093 16 6 -0.1768 -6.7370 -1.0565 17 6 -0.9686 -6.8055 -2.3639 18 1 -0.2843 -6.7578 -3.2110 19 6 -1.7675 -8.1149 -2.4171 20 8 -2.5059 -8.1396 -3.6434 21 6 -3.1777 -7.0037 -3.9765 22 6 -4.1804 -7.0617 -4.9331 23 6 -4.8687 -5.9161 -5.2846 24 6 -4.5605 -4.7097 -4.6838 25 6 -3.5637 -4.6454 -3.7288 26 6 -2.8692 -5.7915 -3.3710 27 8 -1.8923 -5.7132 -2.4266 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5570 0.8897 31 1 1.4921 -5.8348 0.7617 32 1 0.4528 -7.6221 -0.9667 33 1 -0.8677 -6.6956 -0.2145 34 1 -1.0847 -8.9638 -2.3809 35 1 -2.4560 -8.1599 -1.5733 36 1 -4.4231 -8.0029 -5.4038 37 1 -5.6489 -5.9633 -6.0300 38 1 -5.1000 -3.8161 -4.9610 39 1 -3.3251 -3.7018 -3.2607 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835409213.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:47 Heat of formation + Delta-G solvation = -188.497804 kcal Electronic energy + Delta-G solvation = -27528.856598 eV Core-core repulsion = 23335.255387 eV Total energy + Delta-G solvation = -4193.601211 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.34874 -41.08708 -38.67610 -38.22919 -38.09601 -37.07543 -35.62076 -35.43110 -34.00501 -31.61700 -31.12790 -30.26101 -28.37970 -25.67321 -25.15623 -23.76111 -22.75821 -21.53009 -20.81686 -19.94218 -19.32782 -18.79172 -18.44218 -18.26722 -17.73919 -17.52138 -16.69383 -16.38606 -16.31734 -16.17750 -16.05903 -15.68173 -15.38508 -15.14687 -14.83132 -14.76647 -14.53234 -14.18340 -13.93750 -13.61074 -13.52142 -13.24145 -13.15547 -13.11576 -12.81256 -12.75469 -12.71521 -12.57111 -12.13224 -12.05319 -11.93229 -11.89718 -11.55808 -11.26000 -11.05882 -10.81279 -9.62957 -9.05562 -8.44864 -6.64890 -0.75308 0.30917 0.34251 1.09834 1.34677 1.39362 1.47275 1.59737 2.04425 2.24587 2.27674 2.73079 2.75703 2.88870 2.95545 3.31025 3.38433 3.51286 3.71554 3.86581 4.07075 4.14059 4.26582 4.31542 4.38757 4.42791 4.50637 4.61545 4.63361 4.69785 4.73277 4.91360 5.20663 5.23836 5.25497 5.52548 5.65191 5.73230 5.76095 5.96675 6.44528 6.44798 6.52791 7.07105 8.67831 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.012913 B = 0.003405 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.829616 B = 8220.460035 C =10038.443700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.025 3.975 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.256 1.256 7 C -0.571 4.571 8 H 0.068 0.932 9 C -0.422 4.422 10 S 2.602 3.398 11 O -0.979 6.979 12 O -0.987 6.987 13 N -1.040 6.040 14 C 0.524 3.476 15 O -0.529 6.529 16 C -0.122 4.122 17 C 0.050 3.950 18 H 0.074 0.926 19 C 0.031 3.969 20 O -0.315 6.315 21 C 0.031 3.969 22 C -0.119 4.119 23 C -0.114 4.114 24 C -0.115 4.115 25 C -0.142 4.142 26 C 0.032 3.968 27 O -0.321 6.321 28 H 0.274 0.726 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.450 0.550 32 H 0.184 0.816 33 H 0.150 0.850 34 H 0.166 0.834 35 H 0.096 0.904 36 H 0.156 0.844 37 H 0.166 0.834 38 H 0.153 0.847 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.483 -19.978 -3.947 22.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.180 1.180 7 C -0.610 4.610 8 H 0.086 0.914 9 C -0.557 4.557 10 S 2.702 3.298 11 O -0.969 6.969 12 O -0.977 6.977 13 N -0.807 5.807 14 C 0.312 3.688 15 O -0.402 6.402 16 C -0.163 4.163 17 C -0.007 4.007 18 H 0.092 0.908 19 C -0.044 4.044 20 O -0.230 6.230 21 C -0.014 4.014 22 C -0.137 4.137 23 C -0.131 4.131 24 C -0.133 4.133 25 C -0.160 4.160 26 C -0.013 4.013 27 O -0.236 6.236 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.290 0.710 32 H 0.201 0.799 33 H 0.168 0.832 34 H 0.184 0.816 35 H 0.114 0.886 36 H 0.173 0.827 37 H 0.184 0.816 38 H 0.170 0.830 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.651 -19.429 -4.601 22.177 hybrid contribution 0.038 1.217 0.546 1.334 sum -9.613 -18.213 -4.055 20.989 Atomic orbital electron populations 1.70046 1.07692 1.29015 1.47640 1.25902 0.95997 1.03349 0.92651 0.85468 0.78698 0.77029 0.79933 1.19005 1.19234 1.18012 1.20712 0.93106 0.90506 1.56661 0.91371 1.27656 1.10781 1.11133 1.06092 1.05306 0.76026 0.75639 0.72866 1.93499 1.71460 1.86385 1.45561 1.93485 1.71724 1.85954 1.46525 1.54877 1.55497 1.42457 1.27884 1.21431 0.78466 0.88806 0.80096 1.90955 1.64251 1.50368 1.34672 1.22037 0.98788 0.96669 0.98803 1.23152 0.90488 0.87087 0.99997 0.90812 1.23959 0.96152 0.98356 0.85920 1.86256 1.62784 1.32576 1.41393 1.19141 0.97077 0.84541 1.00601 1.20812 0.93946 1.01180 0.97781 1.21317 1.00398 0.90893 1.00534 1.21256 0.96724 0.99915 0.95440 1.20743 0.98802 0.96284 1.00217 1.19253 0.92973 0.94171 0.94869 1.86403 1.39420 1.45742 1.52058 0.91665 0.90838 0.89791 0.70972 0.79924 0.83198 0.81640 0.88622 0.82679 0.81643 0.82971 0.86457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.83 13.29 21.45 0.28 -53.54 16 2 C 0.02 1.40 5.46 84.65 0.46 1.87 16 3 Si 0.97 43.92 29.54 68.60 2.03 45.94 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 6 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 7 C -0.57 -33.28 9.13 25.60 0.23 -33.05 16 8 H 0.07 3.85 7.71 -2.91 -0.02 3.83 16 9 C -0.42 -22.03 5.64 71.24 0.40 -21.63 16 10 S 2.60 112.24 5.03 -56.49 -0.28 111.96 16 11 O -0.98 -43.46 18.08 -127.65 -2.31 -45.77 16 12 O -0.99 -49.67 17.04 -120.73 -2.06 -51.73 16 13 N -1.04 -29.91 5.60 -173.54 -0.97 -30.88 16 14 C 0.52 15.78 7.46 87.66 0.65 16.44 16 15 O -0.53 -22.64 13.56 21.82 0.30 -22.35 16 16 C -0.12 -1.92 5.43 29.85 0.16 -1.76 16 17 C 0.05 1.10 2.55 30.75 0.08 1.18 16 18 H 0.07 1.93 7.96 -2.39 -0.02 1.91 16 19 C 0.03 0.44 6.56 72.14 0.47 0.92 16 20 O -0.32 -6.83 10.42 -82.51 -0.86 -7.68 16 21 C 0.03 0.79 6.49 22.56 0.15 0.94 16 22 C -0.12 -2.38 9.96 22.37 0.22 -2.16 16 23 C -0.11 -2.02 10.04 22.26 0.22 -1.80 16 24 C -0.12 -2.50 10.04 22.26 0.22 -2.28 16 25 C -0.14 -4.14 9.96 22.37 0.22 -3.92 16 26 C 0.03 0.97 6.49 22.56 0.15 1.12 16 27 O -0.32 -10.16 9.36 -71.81 -0.67 -10.83 16 28 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 29 H 0.07 4.16 7.19 -2.39 -0.02 4.15 16 30 H 0.08 4.24 8.14 -2.39 -0.02 4.22 16 31 H 0.45 7.76 8.79 -96.74 -0.85 6.91 16 32 H 0.18 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.15 1.47 8.14 -2.39 -0.02 1.46 16 34 H 0.17 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 37 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 38 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 39 H 0.12 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -90.96 351.36 -0.64 -91.60 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.25 Total: 17.42 kcal Atomic # 6 Polarization: -47.79 SS G_CDS: 3.65 Total: -44.14 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -0.69 Total: -84.43 kcal Atomic # 8 Polarization: -132.76 SS G_CDS: -5.60 Total: -138.36 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 112.24 SS G_CDS: -0.28 Total: 111.96 kcal Total: -90.96 -0.64 -91.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835409213.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.894 kcal (2) G-P(sol) polarization free energy of solvation -90.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds