Wall clock time and date at job start Wed Apr 1 2020 00:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45203 * 109.47521 * 2 1 4 4 C 1.34225 * 117.00325 * 180.02562 * 3 2 1 5 5 O 1.20828 * 119.99903 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00320 * 180.02562 * 4 3 2 7 7 S 1.81394 * 109.47420 * 179.97438 * 6 4 3 8 8 O 1.42102 * 110.54033 * 68.37233 * 7 6 4 9 9 O 1.42098 * 110.54366 * 291.62835 * 7 6 4 10 10 N 1.65596 * 104.45028 * 179.97438 * 7 6 4 11 11 C 1.34780 * 119.99818 * 65.00189 * 10 7 6 12 12 O 1.21544 * 119.99932 * 359.97438 * 11 10 7 13 13 C 1.47887 * 119.99821 * 179.97438 * 11 10 7 14 14 C 1.39922 * 120.02762 * 359.97438 * 13 11 10 15 15 C 1.38324 * 120.35956 * 180.02562 * 14 13 11 16 16 C 1.37743 * 120.41166 * 359.97438 * 15 14 13 17 17 C 1.40753 * 120.04404 * 0.02562 * 16 15 14 18 18 C 1.41428 * 120.18094 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00377 * 24.37846 * 18 17 16 20 20 C 1.39938 * 120.00012 * 204.38668 * 18 17 16 21 21 N 1.30825 * 119.99869 * 17.84278 * 20 18 17 22 22 Si 1.86804 * 120.00158 * 197.84304 * 20 18 17 23 23 H 1.48505 * 109.46701 * 94.69079 * 22 20 18 24 24 H 1.48499 * 109.47242 * 214.69090 * 22 20 18 25 25 H 1.48500 * 109.47130 * 334.69434 * 22 20 18 26 26 C 1.38993 * 120.02489 * 179.97438 * 13 11 10 27 27 H 1.09006 * 109.46716 * 59.99726 * 1 2 3 28 28 H 1.08998 * 109.47317 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47183 * 300.00228 * 1 2 3 30 30 H 1.09002 * 109.47183 * 239.99772 * 2 1 3 31 31 H 1.09000 * 109.47036 * 120.00002 * 2 1 3 32 32 H 1.09006 * 109.46959 * 59.99400 * 6 4 3 33 33 H 1.09000 * 109.46849 * 300.00183 * 6 4 3 34 34 H 0.97004 * 120.00042 * 245.00073 * 10 7 6 35 35 H 1.08009 * 119.81952 * 0.02562 * 14 13 11 36 36 H 1.08004 * 119.79125 * 180.02562 * 15 14 13 37 37 H 1.08004 * 119.98157 * 179.97438 * 16 15 14 38 38 H 0.97002 * 120.00058 * 179.97438 * 21 20 18 39 39 H 1.07998 * 120.19965 * 359.70686 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9209 2.9373 0.0000 7 16 5.7323 2.8424 -0.0001 8 8 6.2045 2.3270 -1.2374 9 8 6.2047 2.3260 1.2365 10 7 6.2290 4.4221 -0.0002 11 6 5.9606 5.2129 1.0577 12 8 5.3537 4.7667 2.0115 13 6 6.4046 6.6236 1.0578 14 6 7.1038 7.1377 -0.0397 15 6 7.5227 8.4559 -0.0466 16 6 7.2563 9.2778 1.0262 17 6 6.5542 8.7785 2.1392 18 6 6.2786 9.6200 3.2420 19 1 6.2347 10.6906 3.1067 20 6 6.0629 9.0655 4.5086 21 7 6.4485 7.8411 4.7609 22 14 5.2243 10.0736 5.8391 23 1 3.7697 9.7748 5.8435 24 1 5.8047 9.7281 7.1616 25 1 5.4319 11.5191 5.5697 26 6 6.1276 7.4397 2.1483 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.5853 3.4690 0.8905 33 1 3.5845 3.4700 -0.8895 34 1 6.7130 4.7783 -0.7617 35 1 7.3175 6.5017 -0.8862 36 1 8.0614 8.8433 -0.8988 37 1 7.5871 10.3059 1.0136 38 1 6.2993 7.4568 5.6389 39 1 5.5841 7.0484 2.9956 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838849599.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:41 Heat of formation + Delta-G solvation = -197.015816 kcal Electronic energy + Delta-G solvation = -26959.329818 eV Core-core repulsion = 22765.359237 eV Total energy + Delta-G solvation = -4193.970580 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.94543 -41.37034 -39.01526 -38.47833 -38.20750 -37.42703 -35.92486 -35.34624 -33.19946 -32.00905 -31.62194 -31.30802 -27.26375 -25.27987 -24.60648 -22.92077 -22.79531 -21.96574 -20.93847 -19.90285 -19.59117 -18.73719 -18.35149 -18.28414 -17.97377 -17.23330 -16.94009 -16.71522 -16.41049 -16.17151 -15.96670 -15.56420 -15.15999 -14.71147 -14.63983 -14.33635 -14.17211 -13.89905 -13.77873 -13.57042 -13.50861 -13.44162 -13.13186 -12.97378 -12.81884 -12.67781 -12.59682 -12.53739 -12.29664 -12.20487 -12.05296 -11.97939 -11.70417 -11.51848 -11.17473 -11.08404 -9.57717 -9.40691 -8.66883 -6.37433 -1.43763 0.09895 0.59489 0.98360 0.99932 1.28339 1.39912 1.47450 1.53706 1.74733 2.20357 2.38399 2.73232 2.82110 3.08040 3.38093 3.62508 3.67064 3.89549 3.92998 3.94915 4.01198 4.26498 4.41674 4.57859 4.66236 4.86517 4.87706 4.95929 5.06193 5.14673 5.24600 5.29828 5.47766 5.55695 5.83178 5.92752 6.05324 6.11934 6.27737 6.48198 6.57821 6.88760 6.92359 8.29811 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.013490 B = 0.003007 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.133569 B = 9309.390384 C =10595.038091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.043 3.957 3 O -0.341 6.341 4 C 0.500 3.500 5 O -0.535 6.535 6 C -0.635 4.635 7 S 2.636 3.364 8 O -0.940 6.940 9 O -0.958 6.958 10 N -1.032 6.032 11 C 0.591 3.409 12 O -0.531 6.531 13 C -0.145 4.145 14 C -0.194 4.194 15 C -0.095 4.095 16 C -0.208 4.208 17 C 0.064 3.936 18 C -0.492 4.492 19 H 0.085 0.915 20 C 0.031 3.969 21 N -0.824 5.824 22 Si 0.981 3.019 23 H -0.265 1.265 24 H -0.273 1.273 25 H -0.252 1.252 26 C -0.121 4.121 27 H 0.074 0.926 28 H 0.106 0.894 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.190 0.810 33 H 0.223 0.777 34 H 0.450 0.550 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.109 0.891 38 H 0.288 0.712 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.760 -8.286 -11.703 17.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.030 4.030 3 O -0.257 6.257 4 C 0.343 3.657 5 O -0.426 6.426 6 C -0.762 4.762 7 S 2.728 3.272 8 O -0.930 6.930 9 O -0.948 6.948 10 N -0.801 5.801 11 C 0.383 3.617 12 O -0.407 6.407 13 C -0.150 4.150 14 C -0.214 4.214 15 C -0.113 4.113 16 C -0.228 4.228 17 C 0.062 3.938 18 C -0.521 4.521 19 H 0.103 0.897 20 C -0.184 4.184 21 N -0.449 5.449 22 Si 0.802 3.198 23 H -0.190 1.190 24 H -0.198 1.198 25 H -0.175 1.175 26 C -0.142 4.142 27 H 0.093 0.907 28 H 0.124 0.876 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.207 0.793 33 H 0.240 0.760 34 H 0.292 0.708 35 H 0.162 0.838 36 H 0.159 0.841 37 H 0.128 0.872 38 H 0.098 0.902 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.449 -9.847 -10.830 17.422 hybrid contribution -0.405 0.704 0.693 1.068 sum -9.854 -9.143 -10.137 16.836 Atomic orbital electron populations 1.21867 0.89740 1.04828 1.03993 1.23628 0.97626 0.78103 1.03676 1.86494 1.21573 1.34954 1.82639 1.22081 0.82499 0.89495 0.71590 1.90816 1.60901 1.43439 1.47458 1.30794 1.25691 1.01089 1.18659 1.04385 0.77046 0.71964 0.73777 1.93619 1.78268 1.76125 1.45019 1.93612 1.77643 1.76892 1.46684 1.54717 1.65529 1.31973 1.27879 1.18683 0.76062 0.87227 0.79748 1.90855 1.40621 1.75433 1.33801 1.19516 1.06177 0.91068 0.98232 1.20956 1.05538 0.96824 0.98034 1.20948 0.99011 0.93434 0.97882 1.21469 1.04351 1.00328 0.96608 1.17945 0.90098 0.92237 0.93524 1.19870 1.44184 0.95279 0.92811 0.89710 1.26805 0.93302 0.96081 1.02198 1.69862 1.34482 1.16301 1.24287 0.85201 0.78794 0.79479 0.76353 1.18962 1.19776 1.17538 1.21536 1.01085 0.94823 0.96746 0.90715 0.87588 0.91396 0.89847 0.90777 0.79293 0.75969 0.70819 0.83774 0.84087 0.87244 0.90177 0.87480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.29 71.98 0.74 -0.76 16 2 C 0.04 0.70 6.19 71.98 0.45 1.15 16 3 O -0.34 -7.39 10.22 -51.37 -0.53 -7.91 16 4 C 0.50 12.92 7.98 71.24 0.57 13.48 16 5 O -0.53 -16.97 15.61 21.97 0.34 -16.63 16 6 C -0.63 -13.90 6.48 71.24 0.46 -13.43 16 7 S 2.64 78.21 4.25 -56.49 -0.24 77.97 16 8 O -0.94 -28.72 18.08 -127.64 -2.31 -31.02 16 9 O -0.96 -38.54 17.04 -120.72 -2.06 -40.60 16 10 N -1.03 -28.66 5.55 -175.57 -0.98 -29.64 16 11 C 0.59 22.30 7.51 86.80 0.65 22.96 16 12 O -0.53 -23.33 14.43 12.50 0.18 -23.15 16 13 C -0.14 -6.03 5.87 -20.13 -0.12 -6.15 16 14 C -0.19 -6.61 9.55 22.70 0.22 -6.39 16 15 C -0.09 -3.33 10.01 22.17 0.22 -3.11 16 16 C -0.21 -8.84 9.78 22.77 0.22 -8.62 16 17 C 0.06 3.22 5.57 -21.32 -0.12 3.11 16 18 C -0.49 -25.08 9.05 23.47 0.21 -24.86 16 19 H 0.08 4.09 7.91 -2.91 -0.02 4.06 16 20 C 0.03 1.55 5.14 85.25 0.44 1.99 16 21 N -0.82 -43.64 10.96 21.82 0.24 -43.40 16 22 Si 0.98 37.61 29.60 68.60 2.03 39.64 16 23 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 24 H -0.27 -10.18 7.11 99.48 0.71 -9.48 16 25 H -0.25 -9.16 7.11 99.48 0.71 -8.45 16 26 C -0.12 -6.11 8.23 23.01 0.19 -5.92 16 27 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 1.26 8.13 -2.39 -0.02 1.24 16 31 H 0.07 1.26 8.13 -2.39 -0.02 1.25 16 32 H 0.19 4.14 7.19 -2.39 -0.02 4.12 16 33 H 0.22 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.45 9.07 6.81 -96.74 -0.66 8.41 16 35 H 0.14 3.42 6.38 -2.91 -0.02 3.40 16 36 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 37 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 38 H 0.29 14.11 8.30 -92.71 -0.77 13.34 16 39 H 0.11 5.98 5.75 -2.91 -0.02 5.96 16 Total: -1.00 -75.47 355.98 1.27 -74.19 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 0.45 Total: 27.09 kcal Atomic # 6 Polarization: -30.68 SS G_CDS: 4.13 Total: -26.55 kcal Atomic # 7 Polarization: -72.30 SS G_CDS: -0.74 Total: -73.04 kcal Atomic # 8 Polarization: -114.94 SS G_CDS: -4.37 Total: -119.31 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 2.03 Total: 39.64 kcal Atomic # 16 Polarization: 78.21 SS G_CDS: -0.24 Total: 77.97 kcal Total: -75.47 1.27 -74.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838849599.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.825 kcal (2) G-P(sol) polarization free energy of solvation -75.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds