Wall clock time and date at job start Wed Apr 1 2020 00:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47123 * 2 1 4 4 C 1.53003 * 109.47123 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47295 * 180.02562 * 4 3 2 6 6 C 1.36938 * 119.99558 * 275.00129 * 5 4 3 7 7 H 1.08005 * 119.99582 * 143.07452 * 6 5 4 8 8 C 1.38812 * 120.00229 * 323.06838 * 6 5 4 9 9 N 1.31616 * 120.00062 * 157.45343 * 8 6 5 10 10 Si 1.86798 * 120.00019 * 337.44826 * 8 6 5 11 11 H 1.48492 * 109.47171 * 95.47773 * 10 8 6 12 12 H 1.48497 * 109.47221 * 215.47851 * 10 8 6 13 13 H 1.48509 * 109.46922 * 335.47488 * 10 8 6 14 14 S 1.65595 * 120.00011 * 94.99999 * 5 4 3 15 15 O 1.42100 * 106.40254 * 342.52071 * 14 5 4 16 16 O 1.42103 * 106.40179 * 209.59898 * 14 5 4 17 17 C 1.76201 * 107.21751 * 96.06277 * 14 5 4 18 18 C 1.35501 * 120.05035 * 114.62234 * 17 14 5 19 19 C 1.39495 * 121.57915 * 179.70356 * 18 17 14 20 20 C 1.35510 * 121.58508 * 0.56371 * 19 18 17 21 21 C 1.41755 * 119.89569 * 359.44627 * 20 19 18 22 22 N 1.32331 * 131.00705 * 180.28423 * 21 20 19 23 23 S 1.55537 * 109.42338 * 179.97438 * 22 21 20 24 24 N 1.55533 * 100.20404 * 359.97438 * 23 22 21 25 25 C 1.32325 * 109.42361 * 0.02562 * 24 23 22 26 26 H 1.09005 * 109.46783 * 300.00057 * 1 2 3 27 27 H 1.08996 * 109.47403 * 59.99648 * 1 2 3 28 28 H 1.08999 * 109.46979 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47037 * 239.99806 * 2 1 3 30 30 H 1.09001 * 109.46866 * 119.99876 * 2 1 3 31 31 H 1.08997 * 109.47322 * 59.99981 * 3 2 1 32 32 H 1.09001 * 109.47148 * 299.99703 * 3 2 1 33 33 H 1.09005 * 109.46783 * 59.99943 * 4 3 2 34 34 H 1.08994 * 109.46899 * 300.00268 * 4 3 2 35 35 H 0.96999 * 120.00510 * 179.97438 * 9 8 6 36 36 H 1.07994 * 119.21144 * 359.97218 * 18 17 14 37 37 H 1.08003 * 119.21029 * 180.30454 * 19 18 17 38 38 H 1.07993 * 120.04857 * 179.71233 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.1897 3.5039 -1.1799 7 1 3.9600 4.5583 -1.2242 8 6 4.6179 2.8384 -2.3203 9 7 4.3352 3.3236 -3.5107 10 14 5.5955 1.2542 -2.1656 11 1 4.6766 0.0928 -2.2749 12 1 6.6072 1.1888 -3.2506 13 1 6.2799 1.2216 -0.8480 14 16 4.4517 3.5622 1.4303 15 8 3.8402 2.7964 2.4593 16 8 4.2083 4.9499 1.2451 17 6 6.1915 3.3868 1.6465 18 6 6.9905 4.4811 1.6347 19 6 8.3708 4.3797 1.8089 20 6 8.9776 3.1812 1.9867 21 6 8.2036 1.9939 2.0102 22 7 8.5582 0.7292 2.1711 23 16 7.2935 -0.1742 2.1117 24 7 6.1955 0.9036 1.8839 25 6 6.7573 2.1006 1.8344 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9284 -0.8892 34 1 3.9329 0.9287 0.8908 35 1 4.6347 2.8587 -4.3076 36 1 6.5476 5.4555 1.4913 37 1 8.9708 5.2777 1.7977 38 1 10.0488 3.1311 2.1146 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001260386593.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:48 Heat of formation + Delta-G solvation = 9.935870 kcal Electronic energy + Delta-G solvation = -26481.013689 eV Core-core repulsion = 22771.062830 eV Total energy + Delta-G solvation = -3709.950860 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.64324 -36.79103 -36.34649 -35.75457 -34.53823 -33.97128 -33.69085 -32.08355 -30.14541 -28.34219 -27.32567 -24.63218 -22.85382 -22.41055 -22.20228 -20.68162 -19.46194 -18.33760 -17.52734 -17.10067 -16.74069 -16.13185 -15.82873 -15.45925 -15.37515 -14.78943 -14.69576 -14.06940 -13.57323 -13.10513 -13.03754 -12.74177 -12.58566 -12.14314 -12.01331 -11.85670 -11.80293 -11.70667 -11.44081 -11.41088 -11.15022 -10.91553 -10.89119 -10.81471 -10.71087 -10.59422 -10.45942 -10.37801 -10.13144 -9.82997 -9.74127 -9.08517 -8.56125 -8.49691 -8.18221 -6.79054 -4.19944 -0.10684 1.49403 1.57651 1.61504 1.82389 1.93149 2.92805 3.07534 3.10758 3.53036 3.90987 4.10004 4.40656 4.62845 4.82070 4.90989 5.04621 5.23728 5.32104 5.40809 5.42301 5.56056 5.64122 5.77154 5.81905 6.08259 6.15626 6.17888 6.20860 6.27914 6.31011 6.37334 6.39112 6.43694 6.53907 6.76363 6.89942 7.00480 7.11802 7.33032 8.14121 8.75936 8.86807 10.26785 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.010949 B = 0.006183 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.694590 B = 4527.691847 C = 4785.874678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.128 4.128 4 C 0.120 3.880 5 N -0.818 5.818 6 C -0.248 4.248 7 H 0.126 0.874 8 C 0.070 3.930 9 N -0.820 5.820 10 Si 0.878 3.122 11 H -0.266 1.266 12 H -0.288 1.288 13 H -0.260 1.260 14 S 2.540 3.460 15 O -0.985 6.985 16 O -0.975 6.975 17 C -0.602 4.602 18 C 0.002 3.998 19 C -0.110 4.110 20 C -0.042 4.042 21 C 0.065 3.935 22 N -0.595 5.595 23 S 0.770 5.230 24 N -0.579 5.579 25 C 0.151 3.849 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.282 0.718 36 H 0.153 0.847 37 H 0.142 0.858 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.195 -5.649 6.066 9.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.168 4.168 4 C -0.006 4.006 5 N -0.642 5.642 6 C -0.397 4.397 7 H 0.143 0.857 8 C -0.146 4.146 9 N -0.456 5.456 10 Si 0.705 3.295 11 H -0.193 1.193 12 H -0.215 1.215 13 H -0.184 1.184 14 S 2.640 3.360 15 O -0.975 6.975 16 O -0.965 6.965 17 C -0.685 4.685 18 C -0.023 4.023 19 C -0.135 4.135 20 C -0.067 4.067 21 C -0.096 4.096 22 N -0.446 5.446 23 S 0.817 5.183 24 N -0.429 5.429 25 C -0.009 4.009 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.171 0.829 37 H 0.159 0.841 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.550 -7.569 6.992 11.264 hybrid contribution 1.728 0.761 -0.467 1.945 sum 6.277 -6.808 6.525 11.329 Atomic orbital electron populations 1.21744 0.96111 1.00843 1.01892 1.21475 0.95647 0.97430 1.01588 1.21919 0.95559 0.96123 1.03197 1.21442 0.94178 0.83162 1.01781 1.53920 1.66336 1.22428 1.21515 1.19419 1.39314 0.97975 0.82963 0.85717 1.25764 0.95100 0.98627 0.95099 1.69827 1.38341 1.39379 0.98010 0.86902 0.80526 0.83183 0.78885 1.19300 1.21501 1.18375 1.11041 0.74560 0.74824 0.75611 1.93379 1.74905 1.70922 1.58268 1.93383 1.84069 1.32821 1.86203 1.31606 1.32476 0.93017 1.11412 1.20787 0.93143 0.98690 0.89692 1.20971 0.95222 0.97644 0.99692 1.20338 0.99192 0.88459 0.98703 1.21363 0.93266 0.90746 1.04210 1.72167 1.36430 1.08923 1.27116 1.78359 0.79824 1.18572 1.41518 1.72266 1.37537 1.06737 1.26355 1.20339 0.90157 0.90932 0.99447 0.92792 0.92693 0.93340 0.92356 0.92154 0.91637 0.90591 0.92814 0.89699 0.90754 0.82948 0.84067 0.84366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.63 16 2 C -0.12 -1.94 5.93 -26.73 -0.16 -2.10 16 3 C -0.13 -2.47 5.51 -26.73 -0.15 -2.62 16 4 C 0.12 2.57 4.32 -4.04 -0.02 2.55 16 5 N -0.82 -19.13 2.48 -59.91 -0.15 -19.28 16 6 C -0.25 -6.21 9.58 -15.06 -0.14 -6.35 16 7 H 0.13 3.34 7.64 -52.48 -0.40 2.94 16 8 C 0.07 1.74 5.32 -17.43 -0.09 1.65 16 9 N -0.82 -20.93 13.97 55.49 0.78 -20.16 16 10 Si 0.88 19.45 25.02 -169.99 -4.25 15.19 16 11 H -0.27 -5.63 6.68 56.52 0.38 -5.25 16 12 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.26 -5.76 6.94 56.52 0.39 -5.36 16 14 S 2.54 59.23 5.53 -107.50 -0.59 58.64 16 15 O -0.99 -24.15 16.71 -57.17 -0.96 -25.11 16 16 O -0.97 -24.17 15.96 -57.17 -0.91 -25.09 16 17 C -0.60 -12.51 5.93 -39.21 -0.23 -12.74 16 18 C 0.00 0.04 9.43 -40.09 -0.38 -0.34 16 19 C -0.11 -1.52 9.89 -40.09 -0.40 -1.92 16 20 C -0.04 -0.61 10.09 -39.21 -0.40 -1.01 16 21 C 0.06 1.15 7.16 -83.17 -0.60 0.56 16 22 N -0.60 -9.91 11.44 25.63 0.29 -9.61 16 23 S 0.77 11.57 23.60 -107.50 -2.54 9.03 16 24 N -0.58 -11.31 10.22 25.62 0.26 -11.04 16 25 C 0.15 3.07 6.69 -83.17 -0.56 2.51 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.05 1.16 2.99 -51.93 -0.16 1.00 16 34 H 0.08 1.78 6.24 -51.93 -0.32 1.46 16 35 H 0.28 6.66 8.31 -40.82 -0.34 6.32 16 36 H 0.15 2.46 7.22 -52.49 -0.38 2.08 16 37 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 38 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 340.96 15.07 5.14 5.14 Total: -1.00 -30.94 340.96 -9.91 -40.85 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -4.23 Total: 2.87 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -2.75 Total: -21.43 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: 1.18 Total: -60.10 kcal Atomic # 8 Polarization: -48.33 SS G_CDS: -1.87 Total: -50.19 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.25 Total: 15.19 kcal Atomic # 16 Polarization: 70.80 SS G_CDS: -3.13 Total: 67.67 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.94 -9.91 -40.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260386593.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.787 kcal (2) G-P(sol) polarization free energy of solvation -30.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds