Wall clock time and date at job start Tue Mar 31 2020 23:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99845 * 2 1 4 4 H 1.48494 * 109.47230 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47021 * 299.99547 * 3 2 1 6 6 H 1.48501 * 109.47039 * 59.99963 * 3 2 1 7 7 C 1.38798 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00371 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99832 * 359.72198 * 7 2 1 10 10 C 1.81004 * 99.99907 * 180.27629 * 9 7 2 11 11 C 1.50699 * 109.46742 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00732 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99778 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00309 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47359 * 180.02562 * 14 13 11 16 16 H 1.09002 * 112.97039 * 53.32317 * 15 14 13 17 17 C 1.53948 * 113.76960 * 185.00254 * 15 14 13 18 18 C 1.53948 * 86.29233 * 137.90887 * 17 15 14 19 19 N 1.47582 * 86.11463 * 336.38861 * 18 17 15 20 20 C 1.34775 * 134.49667 * 204.63213 * 19 18 17 21 21 O 1.21580 * 120.00211 * 180.02562 * 20 19 18 22 22 C 1.47697 * 119.99678 * 0.02562 * 20 19 18 23 23 C 1.39489 * 122.10018 * 179.97438 * 22 20 19 24 24 C 1.35001 * 111.68232 * 179.97438 * 23 22 20 25 25 S 1.71763 * 105.45003 * 0.02562 * 24 23 22 26 26 N 1.30600 * 122.10428 * 359.70768 * 22 20 19 27 27 H 0.96995 * 120.00136 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47255 * 300.00302 * 10 9 7 29 29 H 1.09001 * 109.46783 * 60.00610 * 10 9 7 30 30 H 0.97005 * 120.00069 * 0.02562 * 13 11 10 31 31 H 1.09000 * 109.47102 * 300.00443 * 14 13 11 32 32 H 1.09006 * 109.46942 * 60.00242 * 14 13 11 33 33 H 1.08999 * 113.74082 * 252.24997 * 17 15 14 34 34 H 1.08996 * 113.74180 * 23.45150 * 17 15 14 35 35 H 1.08996 * 113.77292 * 90.68941 * 18 17 15 36 36 H 1.09000 * 113.76678 * 221.98665 * 18 17 15 37 37 H 1.08003 * 124.15945 * 359.96723 * 23 22 20 38 38 H 1.07995 * 127.27233 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0086 10 6 2.5161 -3.8913 0.0147 11 6 1.9876 -5.3026 0.0216 12 8 0.7914 -5.5023 0.0218 13 7 2.8444 -6.3430 0.0264 14 6 2.3307 -7.7150 0.0325 15 6 3.5028 -8.6983 0.0378 16 1 4.2135 -8.5088 0.8422 17 6 3.0761 -10.1729 -0.0785 18 6 4.2554 -10.3333 -1.0548 19 7 4.1322 -8.8807 -1.2846 20 6 4.4622 -8.0530 -2.2958 21 8 4.2349 -6.8620 -2.2053 22 6 5.0999 -8.5927 -3.5137 23 6 5.4590 -7.7764 -4.5863 24 6 6.0247 -8.4861 -5.5857 25 16 6.0330 -10.1155 -5.0421 26 7 5.3677 -9.8634 -3.6521 27 1 -0.4850 0.8400 -0.0004 28 1 3.1247 -3.7359 -0.8761 29 1 3.1246 -3.7266 0.9039 30 1 3.8012 -6.1834 0.0259 31 1 1.7219 -7.8710 0.9230 32 1 1.7223 -7.8791 -0.8570 33 1 3.1923 -10.7376 0.8466 34 1 2.0990 -10.3119 -0.5412 35 1 5.1886 -10.6242 -0.5726 36 1 4.0219 -10.9396 -1.9301 37 1 5.3034 -6.7080 -4.6139 38 1 6.3933 -8.1092 -6.5282 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285833585.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:49 Heat of formation + Delta-G solvation = 16.379499 kcal Electronic energy + Delta-G solvation = -24106.907436 eV Core-core repulsion = 20397.235993 eV Total energy + Delta-G solvation = -3709.671443 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.07044 -39.63851 -38.63316 -37.59293 -34.18486 -32.34048 -32.14276 -30.45663 -29.71957 -27.57365 -26.63491 -25.38981 -23.37445 -22.84492 -21.02021 -20.16644 -19.35776 -18.70207 -17.86716 -17.55085 -16.60670 -16.39866 -15.96187 -15.56658 -15.06794 -14.76593 -14.72372 -14.61170 -13.88963 -13.83686 -13.71175 -13.65537 -13.02074 -12.78097 -12.69388 -12.50749 -12.29983 -11.91585 -11.71844 -11.61044 -11.53775 -11.17244 -11.00520 -10.92307 -10.67126 -10.27252 -10.06122 -9.70565 -9.26987 -9.20019 -8.99251 -8.98415 -8.63812 -8.10931 -6.38410 -6.13119 -3.81943 0.18493 1.04122 1.39004 1.44555 2.38743 2.98334 3.18159 3.27101 3.32558 3.34758 3.41749 3.80603 4.03869 4.12697 4.29282 4.44172 4.56000 4.65963 4.82502 4.92678 4.98591 5.09467 5.14823 5.21761 5.27136 5.35492 5.42476 5.46235 5.64967 5.67300 5.84064 5.97118 6.03634 6.09605 6.34337 6.82109 7.32900 7.68844 7.83883 7.96800 8.44764 8.83678 9.32235 10.94488 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.014710 B = 0.002505 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.976735 B =11174.922700 C =12686.002132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.531 4.531 8 H 0.072 0.928 9 S -0.063 6.063 10 C -0.149 4.149 11 C 0.536 3.464 12 O -0.527 6.527 13 N -0.723 5.723 14 C 0.123 3.877 15 C 0.126 3.874 16 H 0.104 0.896 17 C -0.146 4.146 18 C 0.115 3.885 19 N -0.628 5.628 20 C 0.606 3.394 21 O -0.506 6.506 22 C 0.057 3.943 23 C -0.133 4.133 24 C -0.280 4.280 25 S 0.456 5.544 26 N -0.517 5.517 27 H 0.267 0.733 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.400 0.600 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.175 0.825 38 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.779 -27.664 -7.499 32.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.679 4.679 8 H 0.091 0.909 9 S 0.163 5.837 10 C -0.300 4.300 11 C 0.323 3.677 12 O -0.402 6.402 13 N -0.378 5.378 14 C -0.002 4.002 15 C 0.023 3.977 16 H 0.121 0.879 17 C -0.185 4.185 18 C -0.008 4.008 19 N -0.365 5.365 20 C 0.391 3.609 21 O -0.379 6.379 22 C -0.118 4.118 23 C -0.165 4.165 24 C -0.429 4.429 25 S 0.611 5.389 26 N -0.352 5.352 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.235 0.765 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.192 0.808 38 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 13.831 -29.208 -7.504 33.177 hybrid contribution 2.236 3.291 -0.072 3.979 sum 16.067 -25.917 -7.576 31.420 Atomic orbital electron populations 1.70039 1.05922 1.27181 1.47315 1.24992 0.95022 0.98979 0.94712 0.86121 0.79622 0.81966 0.77809 1.19636 1.20622 1.20629 1.22925 0.94956 0.91723 1.58333 0.90946 1.85327 1.05344 0.96307 1.96682 1.23486 1.06226 0.95416 1.04853 1.20194 0.86355 0.86285 0.74903 1.90674 1.15440 1.85701 1.48425 1.45801 1.10149 1.04686 1.77144 1.21384 0.94697 0.81296 1.02856 1.23216 0.94095 0.95746 0.84625 0.87877 1.23608 0.99817 0.94337 1.00702 1.23129 0.97945 0.81161 0.98566 1.49962 1.60758 1.09747 1.16036 1.16913 0.77910 0.85000 0.81122 1.90905 1.53082 1.14074 1.79855 1.21144 1.04632 0.87755 0.98256 1.21494 0.99983 1.03580 0.91459 1.27198 1.07766 1.02244 1.05661 1.80532 1.47055 1.07644 1.03652 1.72382 1.20590 1.21472 1.20738 0.92353 0.89125 0.89549 0.76511 0.90179 0.91310 0.88985 0.88351 0.89709 0.89088 0.80807 0.79527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -27.10 13.22 55.49 0.73 -26.37 16 2 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 22.22 29.55 -169.99 -5.02 17.19 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.53 -15.88 9.50 30.94 0.29 -15.59 16 8 H 0.07 2.07 7.80 -52.49 -0.41 1.66 16 9 S -0.06 -1.83 20.57 -107.50 -2.21 -4.04 16 10 C -0.15 -3.38 6.16 36.01 0.22 -3.16 16 11 C 0.54 11.33 7.85 -10.99 -0.09 11.24 16 12 O -0.53 -13.02 15.86 5.56 0.09 -12.93 16 13 N -0.72 -11.61 4.27 -60.30 -0.26 -11.87 16 14 C 0.12 1.59 5.32 -4.05 -0.02 1.57 16 15 C 0.13 1.12 4.28 -66.86 -0.29 0.84 16 16 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 17 C -0.15 -0.86 7.86 -25.80 -0.20 -1.06 16 18 C 0.11 0.77 7.71 -2.97 -0.02 0.75 16 19 N -0.63 -6.46 3.49 -172.36 -0.60 -7.06 16 20 C 0.61 7.87 7.94 -12.40 -0.10 7.77 16 21 O -0.51 -8.22 14.77 5.30 0.08 -8.14 16 22 C 0.06 0.63 6.66 -84.06 -0.56 0.07 16 23 C -0.13 -1.29 9.98 -40.27 -0.40 -1.69 16 24 C -0.28 -1.84 11.41 29.58 0.34 -1.50 16 25 S 0.46 2.72 23.20 -107.50 -2.49 0.23 16 26 N -0.52 -4.70 9.20 24.84 0.23 -4.48 16 27 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 28 H 0.09 2.00 8.14 -51.92 -0.42 1.58 16 29 H 0.09 1.80 8.14 -51.92 -0.42 1.38 16 30 H 0.40 5.88 7.53 -40.82 -0.31 5.57 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.10 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.63 7.32 -51.93 -0.38 0.25 16 37 H 0.17 1.74 7.99 -52.48 -0.42 1.32 16 38 H 0.19 0.70 8.06 -52.49 -0.42 0.27 16 LS Contribution 357.71 15.07 5.39 5.39 Total: -1.00 -38.79 357.71 -9.45 -48.24 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -4.45 Total: 2.56 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -0.92 Total: 1.28 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: 0.10 Total: -49.77 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: 0.17 Total: -21.07 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 16 Polarization: 0.89 SS G_CDS: -4.71 Total: -3.81 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -38.79 -9.45 -48.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285833585.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.617 kcal (2) G-P(sol) polarization free energy of solvation -38.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds