Wall clock time and date at job start Tue Mar 31 2020 23:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 119.99643 * 2 1 4 4 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46793 * 120.00353 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00445 * 3 2 1 7 7 C 1.38798 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99506 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99738 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47234 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99701 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00005 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99680 * 180.02562 * 13 11 10 15 15 C 1.53010 * 109.47032 * 179.97438 * 14 13 11 16 16 H 1.08996 * 112.74090 * 303.76505 * 15 14 13 17 17 C 1.53494 * 113.46481 * 172.94275 * 15 14 13 18 18 C 1.53503 * 83.34194 * 219.15676 * 17 15 14 19 19 N 1.47062 * 113.46110 * 74.50683 * 15 14 13 20 20 C 1.34780 * 136.06361 * 321.92954 * 19 15 14 21 21 O 1.21576 * 119.99415 * 0.02562 * 20 19 15 22 22 C 1.47685 * 120.00185 * 180.02562 * 20 19 15 23 23 C 1.39490 * 122.10391 * 179.74243 * 22 20 19 24 24 C 1.35001 * 111.68210 * 179.78451 * 23 22 20 25 25 S 1.71754 * 105.45249 * 0.43002 * 24 23 22 26 26 N 1.30611 * 122.10530 * 0.02562 * 22 20 19 27 27 H 0.97005 * 119.99723 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47255 * 299.99975 * 10 9 7 29 29 H 1.09001 * 109.46783 * 60.00283 * 10 9 7 30 30 H 0.96995 * 120.00238 * 359.97438 * 13 11 10 31 31 H 1.08992 * 109.47434 * 300.00120 * 14 13 11 32 32 H 1.09001 * 109.47023 * 60.00311 * 14 13 11 33 33 H 1.09001 * 114.20972 * 332.74078 * 17 15 14 34 34 H 1.09000 * 114.21080 * 105.56953 * 17 15 14 35 35 H 1.09006 * 113.46603 * 271.28768 * 18 17 15 36 36 H 1.08995 * 113.52298 * 140.86253 * 18 17 15 37 37 H 1.08001 * 124.15533 * 359.97438 * 23 22 20 38 38 H 1.08001 * 127.26852 * 180.17329 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6966 -1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0021 11 6 1.9876 -5.3027 -0.0017 12 8 0.7913 -5.5023 -0.0009 13 7 2.8444 -6.3430 -0.0022 14 6 2.3307 -7.7150 -0.0024 15 6 3.5028 -8.6985 -0.0036 16 1 4.1841 -8.5410 -0.8397 17 6 3.0730 -10.1618 0.1691 18 6 4.3306 -10.2411 1.0458 19 7 4.1839 -8.7992 1.2959 20 6 4.5236 -7.9460 2.2824 21 8 4.2491 -6.7656 2.1863 22 6 5.2294 -8.4450 3.4799 23 6 5.6062 -7.6004 4.5241 24 6 6.2318 -8.2761 5.5112 25 16 6.2786 -9.9114 4.9880 26 7 5.5448 -9.7041 3.6254 27 1 -0.4850 -0.8401 0.0004 28 1 3.1239 -3.7308 -0.8925 29 1 3.1252 -3.7316 0.8875 30 1 3.8011 -6.1834 -0.0032 31 1 1.7223 -7.8753 0.8876 32 1 1.7218 -7.8748 -0.8923 33 1 2.1386 -10.2918 0.7152 34 1 3.1268 -10.7543 -0.7442 35 1 5.2325 -10.4955 0.4889 36 1 4.2005 -10.8521 1.9389 37 1 5.4176 -6.5371 4.5420 38 1 6.6241 -7.8728 6.4331 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285833586.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:51 Heat of formation + Delta-G solvation = -14.366982 kcal Electronic energy + Delta-G solvation = -24182.185760 eV Core-core repulsion = 20471.181050 eV Total energy + Delta-G solvation = -3711.004710 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.98156 -40.70453 -40.08676 -38.58139 -35.68830 -34.76917 -32.83270 -31.79744 -30.96351 -28.79834 -27.39950 -27.07429 -24.17808 -23.64706 -21.88798 -21.67815 -20.50328 -20.12871 -19.32461 -18.52690 -18.02898 -17.64979 -17.40117 -16.66867 -16.59352 -16.26052 -15.74556 -15.64559 -15.42125 -14.89353 -14.74555 -14.70113 -14.48565 -14.28889 -14.01725 -13.87565 -13.61884 -13.35045 -13.05513 -12.75344 -12.54554 -12.41112 -12.20098 -11.96562 -11.85723 -11.57434 -11.12154 -11.05625 -10.93889 -10.89349 -10.37175 -10.15629 -9.99873 -9.68726 -8.96017 -8.90380 -6.30701 -0.48033 0.48580 0.67658 0.75297 1.15862 1.48921 1.51023 1.59058 1.65868 1.79969 2.09179 2.24044 2.33713 2.99399 3.10545 3.25341 3.49189 3.65804 3.77820 3.86229 3.93951 4.09424 4.10762 4.28268 4.32636 4.35421 4.41025 4.49341 4.65647 4.70371 4.80273 4.87593 4.97265 5.24084 5.32134 5.36296 5.60558 6.11825 6.38378 6.53391 6.93882 7.03535 7.14026 8.47523 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.014403 B = 0.002555 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.559615 B =10954.376625 C =12524.054590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.019 4.019 3 Si 1.139 2.861 4 H -0.276 1.276 5 H -0.265 1.265 6 H -0.262 1.262 7 C -0.616 4.616 8 H 0.071 0.929 9 S -0.190 6.190 10 C -0.106 4.106 11 C 0.535 3.465 12 O -0.570 6.570 13 N -0.697 5.697 14 C 0.117 3.883 15 C 0.121 3.879 16 H 0.128 0.872 17 C -0.126 4.126 18 C 0.113 3.887 19 N -0.636 5.636 20 C 0.602 3.398 21 O -0.558 6.558 22 C 0.030 3.970 23 C -0.163 4.163 24 C -0.270 4.270 25 S 0.541 5.459 26 N -0.535 5.535 27 H 0.260 0.740 28 H 0.109 0.891 29 H 0.096 0.904 30 H 0.409 0.591 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.133 0.867 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.158 0.842 38 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.801 -30.100 7.736 36.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.222 4.222 3 Si 0.956 3.044 4 H -0.201 1.201 5 H -0.190 1.190 6 H -0.186 1.186 7 C -0.763 4.763 8 H 0.090 0.910 9 S 0.037 5.963 10 C -0.257 4.257 11 C 0.320 3.680 12 O -0.450 6.450 13 N -0.349 5.349 14 C -0.007 4.007 15 C 0.018 3.982 16 H 0.146 0.854 17 C -0.165 4.165 18 C -0.009 4.009 19 N -0.371 5.371 20 C 0.387 3.613 21 O -0.436 6.436 22 C -0.143 4.143 23 C -0.195 4.195 24 C -0.419 4.419 25 S 0.696 5.304 26 N -0.372 5.372 27 H 0.071 0.929 28 H 0.127 0.873 29 H 0.115 0.885 30 H 0.246 0.754 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.152 0.848 35 H 0.126 0.874 36 H 0.105 0.895 37 H 0.175 0.825 38 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 17.899 -30.189 7.756 35.943 hybrid contribution 1.167 1.027 0.069 1.556 sum 19.066 -29.163 7.825 35.710 Atomic orbital electron populations 1.70915 1.07921 1.29949 1.45831 1.27922 0.96352 1.06375 0.91544 0.82709 0.73943 0.69353 0.78442 1.20117 1.18966 1.18647 1.24038 0.96423 0.92865 1.63018 0.91037 1.84920 1.12961 1.00968 1.97442 1.23163 1.02121 0.94240 1.06194 1.19896 0.86207 0.86610 0.75277 1.90656 1.17078 1.86127 1.51126 1.45627 1.09976 1.05089 1.74244 1.21691 0.96821 0.80089 1.02100 1.23370 0.92456 0.96268 0.86089 0.85446 1.23490 0.98325 0.92114 1.02532 1.23161 0.98944 0.79078 0.99711 1.49761 1.57277 1.12005 1.18082 1.17191 0.78001 0.84263 0.81804 1.90847 1.55929 1.16964 1.79844 1.20885 1.06092 0.88686 0.98604 1.21462 1.01844 1.03132 0.93098 1.27584 1.05529 1.03028 1.05727 1.80236 1.41531 1.05504 1.03130 1.72087 1.20408 1.21595 1.23135 0.92911 0.87324 0.88532 0.75406 0.93739 0.89313 0.88759 0.84846 0.87441 0.89455 0.82452 0.76583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -60.19 13.67 21.65 0.30 -59.89 16 2 C -0.02 -1.15 5.49 84.86 0.47 -0.69 16 3 Si 1.14 51.60 29.92 68.60 2.05 53.65 16 4 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 5 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 7 C -0.62 -37.96 9.50 67.95 0.65 -37.31 16 8 H 0.07 4.18 7.80 -2.91 -0.02 4.16 16 9 S -0.19 -11.34 19.60 -56.49 -1.11 -12.44 16 10 C -0.11 -4.93 6.16 71.24 0.44 -4.49 16 11 C 0.53 23.22 7.85 87.66 0.69 23.90 16 12 O -0.57 -29.23 15.86 -3.04 -0.05 -29.28 16 13 N -0.70 -22.58 4.17 -463.05 -1.93 -24.51 16 14 C 0.12 2.99 5.35 86.38 0.46 3.45 16 15 C 0.12 1.90 4.08 41.79 0.17 2.07 16 16 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 17 C -0.13 -1.06 8.03 30.93 0.25 -0.82 16 18 C 0.11 1.20 7.59 83.18 0.63 1.83 16 19 N -0.64 -12.40 3.57 -837.30 -2.99 -15.38 16 20 C 0.60 15.91 7.97 86.74 0.69 16.60 16 21 O -0.56 -19.05 14.55 -3.96 -0.06 -19.11 16 22 C 0.03 0.65 6.66 42.12 0.28 0.93 16 23 C -0.16 -3.18 9.98 21.83 0.22 -2.96 16 24 C -0.27 -3.00 11.41 67.07 0.76 -2.23 16 25 S 0.54 4.91 23.20 -56.49 -1.31 3.60 16 26 N -0.54 -8.85 9.32 -75.31 -0.70 -9.56 16 27 H 0.26 17.89 7.12 -92.70 -0.66 17.23 16 28 H 0.11 4.58 8.14 -2.40 -0.02 4.56 16 29 H 0.10 4.42 8.14 -2.39 -0.02 4.41 16 30 H 0.41 12.06 7.36 -92.71 -0.68 11.37 16 31 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.09 0.97 8.12 -2.39 -0.02 0.95 16 34 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.09 1.00 7.28 -2.39 -0.02 0.98 16 37 H 0.16 3.47 7.99 -2.91 -0.02 3.44 16 38 H 0.22 0.94 8.06 -2.91 -0.02 0.92 16 Total: -1.00 -91.34 355.94 0.45 -90.89 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.54 Total: 21.76 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 5.70 Total: 0.28 kcal Atomic # 7 Polarization: -104.01 SS G_CDS: -5.32 Total: -109.33 kcal Atomic # 8 Polarization: -48.29 SS G_CDS: -0.11 Total: -48.39 kcal Atomic # 14 Polarization: 51.60 SS G_CDS: 2.05 Total: 53.65 kcal Atomic # 16 Polarization: -6.43 SS G_CDS: -2.42 Total: -8.85 kcal Total: -91.34 0.45 -90.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285833586.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.523 kcal (2) G-P(sol) polarization free energy of solvation -91.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds