Wall clock time and date at job start Tue Mar 31 2020 23:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42093 * 110.54141 * 2 1 4 4 O 1.42095 * 110.54207 * 223.24330 * 2 1 3 5 5 N 1.65603 * 104.44761 * 111.62302 * 2 1 3 6 6 C 1.39870 * 120.00332 * 59.90586 * 5 2 1 7 7 C 1.38472 * 120.00421 * 33.59303 * 6 5 2 8 8 C 1.39653 * 119.79419 * 179.72221 * 7 6 5 9 9 C 1.47620 * 120.09777 * 180.29504 * 8 7 6 10 10 O 1.21608 * 120.00244 * 314.70199 * 9 8 7 11 11 N 1.34782 * 119.99903 * 134.69417 * 9 8 7 12 12 C 1.36891 * 120.00194 * 177.05822 * 11 9 8 13 13 H 1.08001 * 119.99976 * 6.86179 * 12 11 9 14 14 C 1.39030 * 120.00062 * 186.85841 * 12 11 9 15 15 N 1.31374 * 119.99948 * 7.57313 * 14 12 11 16 16 Si 1.86800 * 120.00150 * 187.56755 * 14 12 11 17 17 H 1.48504 * 109.46674 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.46890 * 119.99993 * 16 14 12 19 19 H 1.48497 * 109.47007 * 240.00198 * 16 14 12 20 20 C 1.46504 * 119.99641 * 357.05899 * 11 9 8 21 21 C 1.47206 * 109.46806 * 96.95364 * 20 11 9 22 22 N 8.60067 * 82.91892 * 155.19624 * 2 1 3 23 23 C 1.39720 * 119.80723 * 0.55162 * 8 7 6 24 24 C 1.37901 * 120.00829 * 359.72413 * 23 8 7 25 25 C 1.38485 * 120.21072 * 0.02562 * 24 23 8 26 26 F 1.35105 * 119.90706 * 179.97438 * 25 24 23 27 27 H 1.09005 * 109.46912 * 68.37994 * 1 2 3 28 28 H 1.09005 * 109.46730 * 188.37840 * 1 2 3 29 29 H 1.08998 * 109.47362 * 308.37719 * 1 2 3 30 30 H 0.97005 * 120.00043 * 239.91085 * 5 2 1 31 31 H 1.08001 * 120.10216 * 0.02562 * 7 6 5 32 32 H 0.97001 * 120.00018 * 180.02562 * 15 14 12 33 33 H 1.09001 * 109.46786 * 216.94848 * 20 11 9 34 34 H 1.08992 * 109.47443 * 336.95293 * 20 11 9 35 35 H 1.07993 * 119.99404 * 179.69889 * 23 8 7 36 36 H 1.07999 * 119.89342 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3127 -0.9693 -0.9116 5 7 2.2272 -0.5909 1.4908 6 6 1.8136 -1.8706 1.8751 7 6 1.7063 -2.8767 0.9298 8 6 1.2985 -4.1543 1.3193 9 6 1.1882 -5.2335 0.3182 10 8 0.6474 -5.0193 -0.7498 11 7 1.6869 -6.4563 0.5877 12 6 1.5315 -7.4732 -0.3154 13 1 1.1091 -7.2713 -1.2886 14 6 1.9177 -8.7660 0.0201 15 7 2.2915 -9.0418 1.2490 16 14 1.9049 -10.1108 -1.2763 17 1 1.4475 -9.5456 -2.5712 18 1 3.2755 -10.6602 -1.4331 19 1 0.9820 -11.1954 -0.8554 20 6 2.3952 -6.6971 1.8474 21 6 1.4687 -7.2901 2.8256 22 7 0.7538 -7.7477 3.5806 23 6 0.9900 -4.4067 2.6585 24 6 1.0941 -3.3974 3.5923 25 6 1.5035 -2.1316 3.2075 26 9 1.6028 -1.1471 4.1274 27 1 -0.3633 0.3787 -0.9554 28 1 -0.3633 -1.0168 0.1498 29 1 -0.3634 0.6380 0.8056 30 1 2.7561 -0.0496 2.0976 31 1 1.9421 -2.6753 -0.1048 32 1 2.5613 -9.9437 1.4830 33 1 3.2254 -7.3813 1.6722 34 1 2.7778 -5.7532 2.2352 35 1 0.6697 -5.3923 2.9622 36 1 0.8548 -3.5944 4.6268 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318279352.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:39 Heat of formation + Delta-G solvation = -82.133803 kcal Electronic energy + Delta-G solvation = -27611.688263 eV Core-core repulsion = 23331.531787 eV Total energy + Delta-G solvation = -4280.156476 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.068 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.97309 -41.42407 -39.68296 -38.29685 -37.74707 -37.20756 -36.34800 -36.10116 -33.76905 -31.87247 -30.46624 -30.33003 -29.16654 -27.03714 -24.57366 -24.04016 -21.58082 -20.67124 -19.92638 -19.29959 -18.99907 -18.44651 -18.00209 -17.89222 -17.42955 -16.80453 -16.77759 -16.65721 -16.32177 -15.96777 -15.38970 -15.13122 -15.03448 -14.88115 -14.38407 -14.11885 -14.09358 -13.95041 -13.88315 -13.77355 -13.35356 -13.34140 -13.17843 -13.14473 -13.06496 -12.96722 -12.53509 -12.34512 -12.14569 -12.08807 -11.98340 -11.75257 -11.19966 -10.67088 -10.12058 -10.00724 -9.42921 -8.38669 -6.01019 -0.92989 -0.29187 0.03605 1.36082 1.39751 1.47108 1.58844 1.76171 1.94131 2.23627 2.31964 2.41516 2.63024 2.91909 2.99323 3.05107 3.13675 3.55045 3.60887 3.71826 3.82536 4.00409 4.03080 4.09360 4.26943 4.44918 4.62335 4.86967 4.88287 4.91172 4.96625 5.09626 5.28772 5.43356 5.54652 5.87914 5.91552 6.33632 6.99207 7.03299 7.24650 7.78796 8.55538 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.016325 B = 0.003762 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.752797 B = 7441.372964 C = 8733.432386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.653 4.653 2 S 2.614 3.386 3 O -0.975 6.975 4 O -0.982 6.982 5 N -1.043 6.043 6 C 0.132 3.868 7 C -0.118 4.118 8 C -0.090 4.090 9 C 0.478 3.522 10 O -0.609 6.609 11 N -0.441 5.441 12 C -0.329 4.329 13 H 0.091 0.909 14 C 0.004 3.996 15 N -0.894 5.894 16 Si 0.994 3.006 17 H -0.273 1.273 18 H -0.264 1.264 19 H -0.283 1.283 20 C 0.213 3.787 21 C 0.271 3.729 22 N -0.506 5.506 23 C -0.091 4.091 24 C -0.111 4.111 25 C 0.099 3.901 26 F -0.124 7.124 27 H 0.156 0.844 28 H 0.133 0.867 29 H 0.160 0.840 30 H 0.439 0.561 31 H 0.163 0.837 32 H 0.278 0.722 33 H 0.143 0.857 34 H 0.118 0.882 35 H 0.127 0.873 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.591 15.829 5.459 16.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.711 3.289 3 O -0.965 6.965 4 O -0.972 6.972 5 N -0.793 5.793 6 C 0.034 3.966 7 C -0.140 4.140 8 C -0.094 4.094 9 C 0.268 3.732 10 O -0.495 6.495 11 N -0.159 5.159 12 C -0.456 4.456 13 H 0.109 0.891 14 C -0.197 4.197 15 N -0.535 5.535 16 Si 0.819 3.181 17 H -0.197 1.197 18 H -0.189 1.189 19 H -0.209 1.209 20 C 0.087 3.913 21 C -0.046 4.046 22 N -0.188 5.188 23 C -0.112 4.112 24 C -0.130 4.130 25 C 0.075 3.925 26 F -0.102 7.102 27 H 0.174 0.826 28 H 0.152 0.848 29 H 0.178 0.822 30 H 0.278 0.722 31 H 0.180 0.820 32 H 0.089 0.911 33 H 0.161 0.839 34 H 0.135 0.865 35 H 0.144 0.856 36 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -0.062 15.347 5.334 16.247 hybrid contribution -0.109 -0.735 -0.277 0.793 sum -0.171 14.612 5.057 15.463 Atomic orbital electron populations 1.30327 1.22554 1.13388 1.14432 1.04816 0.79460 0.72585 0.72037 1.93595 1.79819 1.37801 1.85307 1.93575 1.79098 1.61532 1.62982 1.53212 1.66188 1.21225 1.38670 1.17031 1.01827 0.85485 0.92274 1.21753 1.00028 0.90332 1.01856 1.19747 1.02093 0.93858 0.93708 1.18434 0.83320 0.83414 0.87996 1.90630 1.48912 1.82697 1.27270 1.43727 1.47633 1.08495 1.16025 1.19880 1.41362 0.87192 0.97161 0.89133 1.25923 0.95357 0.99505 0.98869 1.69771 1.43930 1.22333 1.17432 0.84827 0.78435 0.77065 0.77814 1.19716 1.18880 1.20937 1.19498 0.92277 1.00685 0.78848 1.29296 0.93127 0.90262 0.91882 1.80938 1.10853 1.12730 1.14285 1.21404 0.98600 1.00157 0.91011 1.21128 1.00070 0.89778 1.02012 1.17473 1.03522 0.86534 0.84938 1.91518 1.93759 1.60246 1.64713 0.82588 0.84792 0.82192 0.72225 0.81976 0.91107 0.83942 0.86465 0.85568 0.80932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -8.17 10.71 113.37 1.21 -6.95 16 2 S 2.61 51.14 5.84 -56.49 -0.33 50.81 16 3 O -0.97 -22.96 18.08 -127.65 -2.31 -25.26 16 4 O -0.98 -28.55 15.05 -127.65 -1.92 -30.48 16 5 N -1.04 -18.85 5.60 -51.30 -0.29 -19.13 16 6 C 0.13 2.99 6.15 38.16 0.23 3.23 16 7 C -0.12 -3.55 8.83 22.67 0.20 -3.35 16 8 C -0.09 -3.10 4.85 -20.10 -0.10 -3.20 16 9 C 0.48 21.71 7.20 86.72 0.62 22.33 16 10 O -0.61 -32.22 16.57 -4.06 -0.07 -32.29 16 11 N -0.44 -20.36 2.60 -648.92 -1.69 -22.05 16 12 C -0.33 -16.76 9.50 84.09 0.80 -15.96 16 13 H 0.09 4.98 7.18 -2.91 -0.02 4.96 16 14 C 0.00 0.20 5.32 84.95 0.45 0.65 16 15 N -0.89 -41.71 8.11 21.68 0.18 -41.53 16 16 Si 0.99 39.52 29.56 68.60 2.03 41.55 16 17 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 18 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 19 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 20 C 0.21 8.24 4.76 84.57 0.40 8.65 16 21 C 0.27 11.20 10.48 89.44 0.94 12.13 16 22 N -0.51 -22.28 18.46 20.01 0.37 -21.91 16 23 C -0.09 -2.65 7.63 22.55 0.17 -2.48 16 24 C -0.11 -2.38 10.00 22.25 0.22 -2.16 16 25 C 0.10 2.03 7.31 22.58 0.17 2.20 16 26 F -0.12 -2.24 16.93 44.97 0.76 -1.48 16 27 H 0.16 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.13 1.94 8.10 -2.39 -0.02 1.92 16 29 H 0.16 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.44 5.94 8.73 -96.74 -0.84 5.09 16 31 H 0.16 5.52 5.13 -2.91 -0.01 5.50 16 32 H 0.28 12.48 8.31 -92.71 -0.77 11.71 16 33 H 0.14 5.74 6.07 -2.39 -0.01 5.73 16 34 H 0.12 3.62 5.78 -2.39 -0.01 3.60 16 35 H 0.13 4.12 4.55 -2.91 -0.01 4.11 16 36 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -71.45 329.06 2.41 -69.04 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.35 Total: 17.64 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 5.33 Total: 15.10 kcal Atomic # 7 Polarization: -103.19 SS G_CDS: -1.43 Total: -104.62 kcal Atomic # 8 Polarization: -83.74 SS G_CDS: -4.30 Total: -88.03 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.76 Total: -1.48 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Atomic # 16 Polarization: 51.14 SS G_CDS: -0.33 Total: 50.81 kcal Total: -71.45 2.41 -69.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318279352.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.094 kcal (2) G-P(sol) polarization free energy of solvation -71.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds