Wall clock time and date at job start Tue Mar 31 2020 23:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99788 * 2 1 4 4 H 1.48500 * 109.46917 * 269.99447 * 3 2 1 5 5 H 1.48495 * 109.47201 * 29.99549 * 3 2 1 6 6 H 1.48501 * 109.46972 * 149.99647 * 3 2 1 7 7 C 1.37874 * 120.00342 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99868 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00320 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47165 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99967 * 180.02562 * 10 9 7 12 12 O 1.21276 * 119.99800 * 359.97438 * 11 10 9 13 13 C 1.50695 * 119.99947 * 180.02562 * 11 10 9 14 14 O 1.45200 * 109.47074 * 179.97438 * 13 11 10 15 15 C 1.34678 * 116.99809 * 179.97438 * 14 13 11 16 16 O 1.21408 * 120.00047 * 0.02562 * 15 14 13 17 17 C 1.48161 * 119.99548 * 179.97438 * 15 14 13 18 18 N 1.32804 * 119.59128 * 0.02562 * 17 15 14 19 19 C 1.31341 * 121.81422 * 179.97438 * 18 17 15 20 20 C 1.39814 * 120.76483 * 0.02562 * 19 18 17 21 21 C 1.48021 * 120.45170 * 179.97438 * 20 19 18 22 22 N 1.34777 * 119.99535 * 359.97438 * 21 20 19 23 23 O 1.21523 * 120.00156 * 180.02562 * 21 20 19 24 24 C 1.39764 * 119.10244 * 0.23686 * 20 19 18 25 25 C 1.38687 * 118.34291 * 359.47668 * 24 20 19 26 26 Cl 1.73595 * 120.42439 * 180.26159 * 25 24 20 27 27 H 0.97003 * 120.00027 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46489 * 60.00774 * 9 7 2 29 29 H 1.09000 * 109.46878 * 300.00455 * 9 7 2 30 30 H 0.97000 * 119.99912 * 0.02562 * 10 9 7 31 31 H 1.08999 * 109.47405 * 59.99379 * 13 11 10 32 32 H 1.09005 * 109.47158 * 299.99652 * 13 11 10 33 33 H 1.07997 * 119.61855 * 179.97438 * 19 18 17 34 34 H 0.97001 * 120.00485 * 0.02562 * 22 21 20 35 35 H 0.97005 * 119.99790 * 179.72347 * 22 21 20 36 36 H 1.07994 * 120.83020 * 179.74541 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0010 11 6 5.3250 -2.8214 0.0020 12 8 6.1130 -1.8996 0.0025 13 6 5.8273 -4.2422 0.0013 14 8 7.2793 -4.2422 0.0020 15 6 7.8907 -5.4422 0.0020 16 8 7.2295 -6.4604 0.0010 17 6 9.3703 -5.5196 0.0021 18 7 10.0856 -4.4007 0.0027 19 6 11.3989 -4.4184 0.0033 20 6 12.0977 -5.6293 0.0028 21 6 13.5779 -5.6412 0.0029 22 7 14.2611 -4.4794 0.0030 23 8 14.1771 -6.6985 0.0020 24 6 11.3799 -6.8285 -0.0034 25 6 9.9944 -6.7665 0.0023 26 17 9.0493 -8.2226 0.0019 27 1 -0.4850 0.8401 -0.0004 28 1 3.8744 -0.6800 0.8912 29 1 3.8752 -0.6803 -0.8888 30 1 3.3696 -3.3125 0.0002 31 1 5.4647 -4.7554 -0.8894 32 1 5.4632 -4.7568 0.8906 33 1 11.9452 -3.4868 0.0033 34 1 13.7828 -3.6355 0.0033 35 1 15.2311 -4.4872 0.0071 36 1 11.8913 -7.7797 -0.0080 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319870462.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:22 Heat of formation + Delta-G solvation = -108.689455 kcal Electronic energy + Delta-G solvation = -25379.221548 eV Core-core repulsion = 21083.497037 eV Total energy + Delta-G solvation = -4295.724512 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.066 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.60982 -40.53415 -39.45544 -38.79589 -37.23474 -36.50690 -34.61521 -34.38583 -33.40211 -32.44601 -32.00627 -29.61473 -27.48802 -26.22562 -24.48388 -22.80533 -22.00169 -21.34973 -20.14480 -19.15072 -18.74463 -18.07622 -17.43617 -17.08437 -16.91248 -16.62077 -16.18200 -15.93346 -15.72873 -15.16432 -15.03537 -14.93007 -14.32836 -14.30992 -14.04863 -13.81396 -13.17349 -13.14734 -12.61547 -12.60522 -12.39148 -12.10227 -12.08687 -11.21141 -11.07766 -10.88728 -10.77900 -10.77289 -10.62829 -10.43660 -10.11647 -10.01099 -9.78411 -9.55339 -9.35904 -8.82835 -8.28001 -6.25065 -4.28201 -0.64699 0.23896 1.35329 1.60102 1.95539 2.33097 2.64961 3.00547 3.04453 3.24485 3.29196 3.32698 3.39323 3.69926 3.86148 3.97835 4.06505 4.19524 4.30042 4.40334 4.86640 4.99606 5.08854 5.09306 5.12684 5.19550 5.38895 6.00060 6.03699 6.52392 6.71582 6.79695 6.99997 7.07959 7.30623 7.37793 7.45786 8.03531 8.40025 8.66945 8.78803 9.33953 10.86645 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.019294 B = 0.002104 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.893169 B =13305.901785 C =14736.346824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.223 3.777 10 N -0.700 5.700 11 C 0.502 3.498 12 O -0.532 6.532 13 C 0.047 3.953 14 O -0.302 6.302 15 C 0.513 3.487 16 O -0.472 6.472 17 C 0.134 3.866 18 N -0.412 5.412 19 C 0.136 3.864 20 C -0.154 4.154 21 C 0.572 3.428 22 N -0.843 5.843 23 O -0.527 6.527 24 C -0.015 4.015 25 C -0.043 4.043 26 Cl 0.002 6.998 27 H 0.268 0.732 28 H 0.028 0.972 29 H 0.023 0.977 30 H 0.399 0.601 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.177 0.823 34 H 0.405 0.595 35 H 0.412 0.588 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.130 -13.466 0.033 30.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.584 4.584 8 H 0.099 0.901 9 C 0.101 3.899 10 N -0.350 5.350 11 C 0.285 3.715 12 O -0.409 6.409 13 C -0.031 4.031 14 O -0.215 6.215 15 C 0.353 3.647 16 O -0.357 6.357 17 C -0.004 4.004 18 N -0.122 5.122 19 C -0.026 4.026 20 C -0.160 4.160 21 C 0.355 3.645 22 N -0.408 5.408 23 O -0.403 6.403 24 C -0.041 4.041 25 C -0.073 4.073 26 Cl 0.031 6.969 27 H 0.078 0.922 28 H 0.046 0.954 29 H 0.041 0.959 30 H 0.233 0.767 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.194 0.806 34 H 0.235 0.765 35 H 0.244 0.756 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 26.909 -13.056 0.032 29.909 hybrid contribution 0.363 0.060 -0.019 0.369 sum 27.273 -12.996 0.013 30.211 Atomic orbital electron populations 1.69874 1.06216 1.27508 1.49152 1.24791 0.94807 0.99199 0.93803 0.86815 0.80585 0.83193 0.79102 1.19794 1.20857 1.18435 1.21067 0.88341 0.95339 1.53651 0.90113 1.19555 0.95340 0.77928 0.97083 1.46058 1.04794 1.11550 1.72614 1.19851 0.83735 0.89306 0.78594 1.90717 1.55255 1.45541 1.49396 1.22954 0.77164 0.97776 1.05170 1.86704 1.21919 1.30401 1.82521 1.20541 0.87302 0.82389 0.74429 1.90968 1.65324 1.35555 1.43881 1.20122 0.92219 0.88135 0.99908 1.67927 1.07745 1.28067 1.08416 1.23210 0.89460 0.97366 0.92596 1.21227 0.95071 0.94800 1.04908 1.17843 0.86262 0.84320 0.76031 1.43705 1.11607 1.08242 1.77237 1.90870 1.69940 1.30564 1.48949 1.21696 0.90601 1.00151 0.91695 1.21907 0.92989 0.89881 1.02564 1.98470 1.70850 1.31783 1.95765 0.92186 0.95403 0.95864 0.76700 0.87931 0.87927 0.80590 0.76529 0.75601 0.81212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.05 13.96 55.43 0.77 -25.28 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 3 Si 0.88 21.02 27.47 -169.99 -4.67 16.35 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 7 C -0.55 -14.64 9.83 -34.44 -0.34 -14.98 16 8 H 0.08 2.24 7.84 -52.48 -0.41 1.83 16 9 C 0.22 5.32 4.50 -5.19 -0.02 5.30 16 10 N -0.70 -13.59 5.55 -61.47 -0.34 -13.93 16 11 C 0.50 9.37 7.91 -10.99 -0.09 9.28 16 12 O -0.53 -12.12 16.50 -14.10 -0.23 -12.35 16 13 C 0.05 0.66 5.95 36.00 0.21 0.87 16 14 O -0.30 -4.62 9.57 -47.11 -0.45 -5.07 16 15 C 0.51 6.85 7.95 34.81 0.28 7.13 16 16 O -0.47 -6.47 13.70 -19.19 -0.26 -6.73 16 17 C 0.13 1.52 6.75 -82.92 -0.56 0.96 16 18 N -0.41 -4.38 10.10 -9.47 -0.10 -4.48 16 19 C 0.14 0.89 10.71 -17.17 -0.18 0.71 16 20 C -0.15 -1.02 5.90 -104.73 -0.62 -1.64 16 21 C 0.57 3.67 8.06 -12.25 -0.10 3.57 16 22 N -0.84 -2.04 8.83 30.57 0.27 -1.77 16 23 O -0.53 -5.37 17.25 5.35 0.09 -5.28 16 24 C -0.01 -0.11 9.51 -38.85 -0.37 -0.48 16 25 C -0.04 -0.41 6.37 -38.97 -0.25 -0.66 16 26 Cl 0.00 0.02 26.00 -51.86 -1.35 -1.33 16 27 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 29 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 30 H 0.40 6.64 8.32 -40.82 -0.34 6.30 16 31 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.18 0.43 6.41 -52.49 -0.34 0.10 16 34 H 0.40 -0.08 6.89 -40.82 -0.28 -0.36 16 35 H 0.41 0.54 8.93 -40.82 -0.36 0.17 16 36 H 0.17 1.09 7.72 -52.49 -0.41 0.69 16 LS Contribution 344.04 15.07 5.18 5.18 Total: -1.00 -36.68 344.04 -6.13 -42.81 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -2.92 Total: -0.27 kcal Atomic # 6 Polarization: 14.27 SS G_CDS: -2.13 Total: 12.14 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.61 Total: -45.46 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.85 Total: -29.42 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -1.35 Total: -1.33 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.68 -6.13 -42.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319870462.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.883 kcal (2) G-P(sol) polarization free energy of solvation -36.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds