Wall clock time and date at job start Tue Mar 31 2020 22:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30642 * 1 3 3 Si 1.86799 * 120.00249 * 2 1 4 4 H 1.48507 * 109.46881 * 274.00652 * 3 2 1 5 5 H 1.48498 * 109.47002 * 34.00470 * 3 2 1 6 6 H 1.48494 * 109.47233 * 154.01094 * 3 2 1 7 7 C 1.40308 * 119.99733 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00116 * 342.40141 * 7 2 1 9 9 C 1.40533 * 120.00009 * 162.39868 * 7 2 1 10 10 C 1.44187 * 123.71734 * 335.16683 * 9 7 2 11 11 C 1.32766 * 114.43091 * 180.31211 * 10 9 7 12 12 S 1.75469 * 111.36261 * 359.73337 * 11 10 9 13 13 C 1.39549 * 123.71376 * 154.97921 * 9 7 2 14 14 C 1.46237 * 125.22980 * 359.97438 * 13 9 7 15 15 O 1.21754 * 119.99808 * 359.71507 * 14 13 9 16 16 N 1.34771 * 120.00082 * 179.72285 * 14 13 9 17 17 N 1.40098 * 120.00051 * 179.97438 * 16 14 13 18 18 C 1.35855 * 119.69517 * 284.72067 * 17 16 14 19 19 N 1.29845 * 123.36291 * 179.72345 * 18 17 16 20 20 C 1.35656 * 121.61454 * 0.55978 * 19 18 17 21 21 C 1.39643 * 121.64505 * 179.73343 * 20 19 18 22 22 C 1.37661 * 119.68650 * 180.02562 * 21 20 19 23 23 C 1.38884 * 120.82275 * 359.97438 * 22 21 20 24 24 C 1.37766 * 120.56777 * 359.97438 * 23 22 21 25 25 C 1.39336 * 119.51614 * 0.02562 * 24 23 22 26 26 C 1.35351 * 119.69865 * 104.99843 * 17 16 14 27 27 O 1.21722 * 121.29578 * 359.97438 * 26 17 16 28 28 H 0.97004 * 119.99475 * 359.97438 * 1 2 3 29 29 H 1.07997 * 122.78346 * 0.02562 * 10 9 7 30 30 H 1.08008 * 124.31726 * 179.76043 * 11 10 9 31 31 H 0.97006 * 120.00183 * 359.97438 * 16 14 13 32 32 H 1.07999 * 118.32080 * 0.02562 * 18 17 16 33 33 H 1.08001 * 120.15552 * 359.97438 * 21 20 19 34 34 H 1.08005 * 119.58599 * 180.02562 * 22 21 20 35 35 H 1.07998 * 119.71756 * 180.02562 * 23 22 21 36 36 H 1.07997 * 120.24069 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4033 2.0952 -1.3967 5 1 1.4829 2.6267 0.7830 6 1 3.5778 1.4171 0.6135 7 6 2.0079 -1.2151 0.0005 8 1 1.5058 -2.1284 0.2837 9 6 3.3639 -1.2439 -0.3675 10 6 3.9822 -0.2610 -1.2222 11 6 5.2725 -0.4699 -1.4553 12 16 5.8471 -1.9066 -0.6279 13 6 4.2611 -2.2247 0.0571 14 6 3.9304 -3.3483 0.9328 15 8 2.7957 -3.4778 1.3547 16 7 4.8818 -4.2402 1.2730 17 7 4.5651 -5.3163 2.1124 18 6 4.3965 -5.1044 3.4437 19 7 4.0973 -6.0475 4.2845 20 6 3.9409 -7.3341 3.8840 21 6 3.6246 -8.3498 4.7886 22 6 3.4757 -9.6420 4.3381 23 6 3.6356 -9.9497 2.9932 24 6 3.9467 -8.9649 2.0814 25 6 4.1018 -7.6504 2.5168 26 6 4.4356 -6.5583 1.5904 27 8 4.5884 -6.7632 0.4003 28 1 -0.4849 0.8401 0.0004 29 1 3.4397 0.5733 -1.6418 30 1 5.8897 0.1639 -2.0749 31 1 5.7858 -4.1371 0.9367 32 1 4.5125 -4.0993 3.8213 33 1 3.4982 -8.1227 5.8369 34 1 3.2306 -10.4263 5.0391 35 1 3.5143 -10.9695 2.6592 36 1 4.0703 -9.2101 1.0369 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001521097150.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:41 Heat of formation + Delta-G solvation = 27.534035 kcal Electronic energy + Delta-G solvation = -25851.480537 eV Core-core repulsion = 22006.848840 eV Total energy + Delta-G solvation = -3844.631697 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.062 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.86407 -40.53088 -39.45433 -38.70583 -37.94316 -36.08509 -35.32329 -33.16714 -32.11056 -31.17127 -30.95261 -28.53535 -25.99290 -25.62369 -23.96747 -23.10515 -22.73375 -21.05995 -20.46251 -20.04883 -19.86563 -19.19960 -17.89159 -17.33055 -17.08108 -16.90582 -16.22269 -16.18899 -16.17712 -15.65170 -15.43449 -15.14943 -15.06881 -14.94097 -14.55566 -14.47337 -13.92596 -13.55403 -13.38857 -13.14709 -13.02578 -12.86686 -12.80480 -12.32204 -11.88792 -11.80729 -11.71322 -11.41876 -11.33596 -11.22671 -10.80621 -10.68091 -10.25136 -9.60406 -9.24025 -9.17511 -9.14604 -6.64896 -0.62052 -0.33311 0.00070 0.25770 0.94860 1.12897 1.17933 1.34498 1.43770 1.53680 1.62458 1.66362 2.02267 2.20272 2.49471 2.83021 2.87702 3.05199 3.10656 3.59407 3.91762 4.04599 4.18679 4.19971 4.26742 4.36685 4.60163 4.63919 4.82824 4.87205 4.97992 5.08264 5.11961 5.23156 5.32939 5.36006 5.37842 5.63943 5.75603 6.05774 6.18541 6.35885 6.39040 6.58798 6.60371 7.34965 7.89713 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.018101 B = 0.003188 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.500754 B = 8779.531465 C = 9557.961931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.039 3.961 3 Si 0.975 3.025 4 H -0.231 1.231 5 H -0.269 1.269 6 H -0.241 1.241 7 C -0.397 4.397 8 H 0.065 0.935 9 C 0.105 3.895 10 C -0.197 4.197 11 C -0.141 4.141 12 S 0.044 5.956 13 C -0.458 4.458 14 C 0.594 3.406 15 O -0.582 6.582 16 N -0.534 5.534 17 N -0.339 5.339 18 C 0.387 3.613 19 N -0.516 5.516 20 C 0.127 3.873 21 C -0.112 4.112 22 C -0.056 4.056 23 C -0.124 4.124 24 C -0.058 4.058 25 C -0.213 4.213 26 C 0.531 3.469 27 O -0.541 6.541 28 H 0.308 0.692 29 H 0.144 0.856 30 H 0.200 0.800 31 H 0.427 0.573 32 H 0.218 0.782 33 H 0.161 0.839 34 H 0.182 0.818 35 H 0.172 0.828 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.578 -8.546 6.687 15.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.183 4.183 3 Si 0.794 3.206 4 H -0.156 1.156 5 H -0.194 1.194 6 H -0.164 1.164 7 C -0.427 4.427 8 H 0.083 0.917 9 C 0.094 3.906 10 C -0.230 4.230 11 C -0.275 4.275 12 S 0.301 5.699 13 C -0.578 4.578 14 C 0.393 3.607 15 O -0.464 6.464 16 N -0.286 5.286 17 N -0.149 5.149 18 C 0.101 3.899 19 N -0.236 5.236 20 C 0.018 3.982 21 C -0.131 4.131 22 C -0.074 4.074 23 C -0.141 4.141 24 C -0.078 4.078 25 C -0.220 4.220 26 C 0.326 3.674 27 O -0.416 6.416 28 H 0.120 0.880 29 H 0.161 0.839 30 H 0.216 0.784 31 H 0.270 0.730 32 H 0.234 0.766 33 H 0.179 0.821 34 H 0.199 0.801 35 H 0.189 0.811 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 10.838 -9.478 7.170 16.084 hybrid contribution -1.267 1.230 -1.349 2.222 sum 9.571 -8.248 5.821 13.910 Atomic orbital electron populations 1.69612 1.10051 1.33238 1.29615 1.27505 0.95642 1.05423 0.89710 0.85460 0.79857 0.74135 0.81132 1.15557 1.19433 1.16439 1.19714 0.93415 0.96256 1.33315 0.91718 1.18147 0.92124 0.90506 0.89868 1.21405 0.96066 1.02077 1.03460 1.25599 0.98108 1.00612 1.03213 1.82602 1.10137 1.25319 1.51816 1.22364 0.98620 1.11204 1.25593 1.17493 0.83185 0.80526 0.79457 1.90751 1.21868 1.76179 1.57636 1.45386 1.14033 1.19079 1.50151 1.45703 1.60682 1.02751 1.05794 1.25429 0.86327 1.01419 0.76691 1.68783 1.22594 1.00296 1.31975 1.19306 0.96543 0.91524 0.90865 1.21237 1.00497 0.91182 1.00180 1.21846 0.93061 0.96272 0.96271 1.21646 0.99272 1.00354 0.92877 1.21218 0.95093 0.90074 1.01411 1.20676 1.13119 0.94975 0.93208 1.19512 0.76899 0.82119 0.88854 1.90815 1.51130 1.83158 1.16493 0.88038 0.83925 0.78351 0.72955 0.76618 0.82132 0.80103 0.81057 0.84885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -41.62 13.92 21.89 0.30 -41.32 16 2 C 0.04 1.96 5.48 85.37 0.47 2.43 16 3 Si 0.98 36.88 24.53 68.60 1.68 38.56 16 4 H -0.23 -7.56 6.63 99.48 0.66 -6.90 16 5 H -0.27 -9.54 7.11 99.48 0.71 -8.83 16 6 H -0.24 -9.18 6.73 99.48 0.67 -8.51 16 7 C -0.40 -22.50 8.99 23.33 0.21 -22.29 16 8 H 0.06 4.32 6.30 -2.91 -0.02 4.30 16 9 C 0.10 5.25 5.27 -20.89 -0.11 5.14 16 10 C -0.20 -7.98 7.55 22.60 0.17 -7.81 16 11 C -0.14 -4.68 11.07 66.64 0.74 -3.94 16 12 S 0.04 1.58 22.25 -56.49 -1.26 0.32 16 13 C -0.46 -21.83 6.51 24.67 0.16 -21.66 16 14 C 0.59 29.50 7.75 86.32 0.67 30.17 16 15 O -0.58 -34.00 14.59 -4.52 -0.07 -34.06 16 16 N -0.53 -21.75 5.47 -176.68 -0.97 -22.71 16 17 N -0.34 -13.18 2.90 -316.91 -0.92 -14.10 16 18 C 0.39 12.92 11.40 180.19 2.05 14.97 16 19 N -0.52 -16.22 10.37 -191.92 -1.99 -18.22 16 20 C 0.13 3.75 6.63 39.63 0.26 4.02 16 21 C -0.11 -2.30 10.03 22.47 0.23 -2.07 16 22 C -0.06 -0.80 10.00 22.29 0.22 -0.58 16 23 C -0.12 -2.06 10.02 22.31 0.22 -1.83 16 24 C -0.06 -1.52 9.68 22.42 0.22 -1.30 16 25 C -0.21 -7.02 5.89 -19.96 -0.12 -7.14 16 26 C 0.53 21.52 7.79 86.46 0.67 22.19 16 27 O -0.54 -24.89 17.04 -4.42 -0.08 -24.97 16 28 H 0.31 13.79 8.29 -92.71 -0.77 13.03 16 29 H 0.14 5.27 4.55 -2.91 -0.01 5.26 16 30 H 0.20 4.56 8.06 -2.91 -0.02 4.54 16 31 H 0.43 15.15 7.91 -213.31 -1.69 13.47 16 32 H 0.22 6.14 8.06 -2.91 -0.02 6.12 16 33 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 34 H 0.18 0.96 8.06 -2.91 -0.02 0.93 16 35 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 36 H 0.13 3.48 7.83 -2.91 -0.02 3.46 16 Total: -1.00 -77.47 330.78 2.19 -75.28 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: -0.59 Total: 30.92 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 6.07 Total: 10.30 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -3.57 Total: -96.35 kcal Atomic # 8 Polarization: -58.89 SS G_CDS: -0.14 Total: -59.03 kcal Atomic # 14 Polarization: 36.88 SS G_CDS: 1.68 Total: 38.56 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -1.26 Total: 0.32 kcal Total: -77.47 2.19 -75.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521097150.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.815 kcal (2) G-P(sol) polarization free energy of solvation -77.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds