Wall clock time and date at job start Wed Apr 1 2020 00:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46677 * 162.75475 * 3 2 1 5 5 C 1.36932 * 120.00168 * 274.82849 * 4 3 2 6 6 H 1.08001 * 120.00208 * 146.38675 * 5 4 3 7 7 C 1.38810 * 120.00233 * 326.39559 * 5 4 3 8 8 N 1.31615 * 120.00373 * 156.59502 * 7 5 4 9 9 Si 1.86800 * 119.99662 * 336.59087 * 7 5 4 10 10 H 1.48507 * 109.46829 * 95.44919 * 9 7 5 11 11 H 1.48504 * 109.47226 * 215.44727 * 9 7 5 12 12 H 1.48497 * 109.47298 * 335.45122 * 9 7 5 13 13 S 1.65608 * 120.00064 * 94.83612 * 4 3 2 14 14 O 1.42101 * 104.27567 * 206.06904 * 13 4 3 15 15 O 1.42094 * 104.27403 * 333.92432 * 13 4 3 16 16 C 1.81398 * 104.44947 * 89.99397 * 13 4 3 17 17 C 1.52999 * 109.46782 * 179.97438 * 16 13 4 18 18 H 1.09000 * 110.27640 * 59.30549 * 17 16 13 19 19 C 1.54948 * 110.30679 * 181.39149 * 17 16 13 20 20 C 1.55420 * 100.89248 * 155.29073 * 19 17 16 21 21 C 1.54384 * 102.30669 * 325.99077 * 20 19 17 22 22 H 1.09001 * 109.90358 * 261.72677 * 21 20 19 23 23 C 1.53005 * 109.82652 * 140.79922 * 21 20 19 24 24 F 1.39898 * 109.47147 * 300.40901 * 23 21 20 25 25 F 1.39895 * 109.47450 * 60.41313 * 23 21 20 26 26 F 1.39900 * 109.46786 * 180.41110 * 23 21 20 27 27 O 1.43233 * 107.58948 * 21.28689 * 21 20 19 28 28 H 4.40634 * 5.51395 * 179.97438 * 4 1 2 29 29 H 1.08993 * 109.47231 * 42.75374 * 3 2 1 30 30 H 1.09004 * 109.46902 * 282.75281 * 3 2 1 31 31 H 0.97000 * 120.00051 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.47299 * 300.00265 * 16 13 4 33 33 H 1.09007 * 109.46945 * 60.00374 * 16 13 4 34 34 H 1.09000 * 111.12633 * 273.27823 * 19 17 16 35 35 H 1.09001 * 111.12679 * 37.44231 * 19 17 16 36 36 H 1.09000 * 110.88415 * 207.75569 * 20 19 17 37 37 H 1.09000 * 110.93310 * 84.24818 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3200 -0.4095 5 6 3.2676 1.6181 -1.7393 6 1 3.0893 2.6247 -2.0877 7 6 3.6323 0.6265 -2.6395 8 7 3.3282 0.7504 -3.9140 9 14 4.5550 -0.8839 -2.0420 10 1 3.5902 -1.9825 -1.7820 11 1 5.5262 -1.3135 -3.0801 12 1 5.2818 -0.5565 -0.7892 13 16 3.5231 2.4510 0.7359 14 8 3.3443 3.6958 0.0741 15 8 2.7292 2.0985 1.8604 16 6 5.2800 2.1597 1.0805 17 6 5.7644 3.1553 2.1365 18 1 5.1875 3.0427 3.0545 19 6 7.2732 2.9464 2.4205 20 6 7.6720 4.3557 2.9407 21 6 6.7598 5.2834 2.1096 22 1 7.3138 5.6858 1.2615 23 6 6.2482 6.4287 2.9857 24 9 5.5278 5.9047 4.0644 25 9 7.3335 7.1695 3.4657 26 9 5.4153 7.2591 2.2281 27 8 5.6563 4.4994 1.6415 28 1 -1.0502 -0.0005 -0.0001 29 1 3.0097 -0.7537 -0.6976 30 1 3.0094 -0.2260 1.0024 31 1 3.5828 0.0573 -4.5430 32 1 5.4141 1.1432 1.4503 33 1 5.8567 2.2924 0.1651 34 1 7.4273 2.1855 3.1857 35 1 7.8141 2.6979 1.5074 36 1 8.7229 4.5617 2.7377 37 1 7.4578 4.4529 4.0050 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001561501332.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:01 Heat of formation + Delta-G solvation = -215.830391 kcal Electronic energy + Delta-G solvation = -28984.722901 eV Core-core repulsion = 24248.079719 eV Total energy + Delta-G solvation = -4736.643182 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.074 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -51.18839 -48.70329 -48.68891 -40.86870 -38.19850 -37.83315 -36.63632 -34.39465 -33.76817 -33.37754 -33.18173 -29.20231 -28.45597 -26.01917 -25.31815 -22.91566 -22.54688 -20.27755 -20.05825 -19.79548 -19.38960 -19.05722 -18.70641 -18.17036 -17.94578 -17.57342 -17.15143 -16.71638 -16.22730 -15.57968 -15.48829 -15.31910 -15.12252 -14.99627 -14.97152 -14.84788 -14.81536 -14.70709 -14.43547 -14.30921 -14.01517 -13.57436 -13.09552 -13.02069 -12.95573 -12.91294 -12.82036 -12.58778 -12.45772 -12.43806 -11.94880 -11.92442 -11.53198 -11.24847 -11.20174 -11.03440 -10.71310 -10.17254 -8.51366 -6.09986 -0.47288 1.28331 1.37292 1.48695 1.53661 1.67034 1.98058 2.15917 2.23373 2.33943 2.64406 2.79654 2.85199 3.12719 3.27693 3.31821 3.46908 3.60723 3.64271 3.70671 3.92643 4.01855 4.12919 4.18626 4.29886 4.39565 4.50432 4.73203 4.80461 4.91030 4.98250 5.09834 5.19426 5.50407 5.59988 6.22224 6.76462 6.94974 7.02438 8.61977 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.017863 B = 0.003899 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.098091 B = 7179.448841 C = 7598.356411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.226 4.226 3 C 0.207 3.793 4 N -0.853 5.853 5 C -0.303 4.303 6 H 0.068 0.932 7 C 0.022 3.978 8 N -0.890 5.890 9 Si 0.924 3.076 10 H -0.256 1.256 11 H -0.282 1.282 12 H -0.215 1.215 13 S 2.536 3.464 14 O -0.994 6.994 15 O -1.005 7.005 16 C -0.633 4.633 17 C 0.068 3.932 18 H 0.090 0.910 19 C -0.126 4.126 20 C -0.143 4.143 21 C 0.030 3.970 22 H 0.148 0.852 23 C 0.435 3.565 24 F -0.188 7.188 25 F -0.171 7.171 26 F -0.193 7.193 27 O -0.382 6.382 28 H 0.252 0.748 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.283 0.717 32 H 0.174 0.826 33 H 0.146 0.854 34 H 0.126 0.874 35 H 0.104 0.896 36 H 0.137 0.863 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.399 -0.382 14.356 19.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.228 4.228 3 C 0.083 3.917 4 N -0.679 5.679 5 C -0.442 4.442 6 H 0.085 0.915 7 C -0.186 4.186 8 N -0.527 5.527 9 Si 0.746 3.254 10 H -0.182 1.182 11 H -0.208 1.208 12 H -0.137 1.137 13 S 2.640 3.360 14 O -0.984 6.984 15 O -0.995 6.995 16 C -0.762 4.762 17 C 0.010 3.990 18 H 0.108 0.892 19 C -0.164 4.164 20 C -0.180 4.180 21 C -0.029 4.029 22 H 0.165 0.835 23 C 0.380 3.620 24 F -0.170 7.170 25 F -0.152 7.152 26 F -0.174 7.174 27 O -0.302 6.302 28 H 0.269 0.731 29 H 0.103 0.897 30 H 0.143 0.857 31 H 0.093 0.907 32 H 0.191 0.809 33 H 0.164 0.836 34 H 0.144 0.856 35 H 0.123 0.877 36 H 0.155 0.845 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.669 0.381 14.578 19.317 hybrid contribution 0.058 -0.221 -0.433 0.490 sum 12.726 0.160 14.145 19.028 Atomic orbital electron populations 1.25738 0.96845 0.98395 1.00650 1.24099 0.96035 1.01944 1.00702 1.18688 0.84863 0.86542 1.01632 1.53356 1.71135 1.27118 1.16301 1.18652 1.46124 0.98532 0.80878 0.91472 1.26329 0.95616 1.02106 0.94550 1.69970 1.41353 1.36737 1.04638 0.86193 0.79580 0.78656 0.80960 1.18206 1.20838 1.13657 1.08851 0.79578 0.74748 0.72802 1.93432 1.86470 1.44492 1.74053 1.93415 1.68388 1.84068 1.53643 1.30827 1.27752 1.08682 1.08896 1.23068 1.01201 0.80060 0.94662 0.89191 1.23379 0.90501 0.97801 1.04729 1.23350 1.01688 0.92589 1.00404 1.24334 0.88883 0.91111 0.98593 0.83466 1.21389 0.75807 0.84875 0.79885 1.93156 1.79335 1.86406 1.58080 1.93187 1.54191 1.78801 1.89027 1.93192 1.73585 1.74642 1.76009 1.88726 1.46198 1.22538 1.72689 0.73146 0.89723 0.85750 0.90688 0.80865 0.83596 0.85602 0.87726 0.84525 0.88466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -7.43 19.25 74.32 1.43 -6.00 16 2 C -0.23 -9.70 13.63 31.13 0.42 -9.27 16 3 C 0.21 8.44 4.70 84.58 0.40 8.84 16 4 N -0.85 -39.72 2.44 -352.52 -0.86 -40.58 16 5 C -0.30 -16.41 9.55 84.03 0.80 -15.61 16 6 H 0.07 4.24 7.44 -2.91 -0.02 4.22 16 7 C 0.02 1.14 5.32 84.86 0.45 1.59 16 8 N -0.89 -49.56 13.97 21.65 0.30 -49.25 16 9 Si 0.92 35.82 24.94 68.60 1.71 37.53 16 10 H -0.26 -9.40 6.68 99.48 0.66 -8.73 16 11 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 12 H -0.21 -6.74 7.11 99.48 0.71 -6.04 16 13 S 2.54 111.67 5.17 -56.49 -0.29 111.38 16 14 O -0.99 -53.61 16.34 -125.03 -2.04 -55.66 16 15 O -1.00 -46.15 16.98 -127.65 -2.17 -48.31 16 16 C -0.63 -18.66 5.93 71.98 0.43 -18.24 16 17 C 0.07 1.77 3.46 31.26 0.11 1.88 16 18 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 19 C -0.13 -1.81 6.58 32.09 0.21 -1.60 16 20 C -0.14 -1.86 6.24 31.90 0.20 -1.67 16 21 C 0.03 0.66 3.51 31.07 0.11 0.77 16 22 H 0.15 2.58 8.14 -2.39 -0.02 2.56 16 23 C 0.43 10.87 2.80 71.98 0.20 11.08 16 24 F -0.19 -5.11 16.55 44.97 0.74 -4.36 16 25 F -0.17 -3.54 17.06 44.97 0.77 -2.77 16 26 F -0.19 -6.01 17.28 44.97 0.78 -5.24 16 27 O -0.38 -12.23 9.87 -147.33 -1.45 -13.68 16 28 H 0.25 6.72 7.80 -4.41 -0.03 6.69 16 29 H 0.09 3.33 2.63 -2.39 -0.01 3.32 16 30 H 0.12 4.02 7.61 -2.38 -0.02 4.00 16 31 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 32 H 0.17 3.64 8.14 -2.39 -0.02 3.62 16 33 H 0.15 4.18 8.14 -2.39 -0.02 4.16 16 34 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.10 1.30 8.06 -2.39 -0.02 1.28 16 36 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.10 1.17 7.35 -2.39 -0.02 1.15 16 Total: -1.00 -78.55 340.53 3.32 -75.23 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 1.07 Total: 23.94 kcal Atomic # 6 Polarization: -32.99 SS G_CDS: 4.76 Total: -28.23 kcal Atomic # 7 Polarization: -89.28 SS G_CDS: -0.56 Total: -89.83 kcal Atomic # 8 Polarization: -111.99 SS G_CDS: -5.67 Total: -117.65 kcal Atomic # 9 Polarization: -14.66 SS G_CDS: 2.29 Total: -12.37 kcal Atomic # 14 Polarization: 35.82 SS G_CDS: 1.71 Total: 37.53 kcal Atomic # 16 Polarization: 111.67 SS G_CDS: -0.29 Total: 111.38 kcal Total: -78.55 3.32 -75.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001561501332.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.596 kcal (2) G-P(sol) polarization free energy of solvation -78.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds